.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV (positive_somatic_control_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/0ee2408b7363c8cc093a137363d857/.command.log
Size: 663 bytes
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV (positive_somatic_control_2)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/0ee2408b7363c8cc093a137363d857/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/0ee2408b7363c8cc093a137363d857/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/b8bce9b156df479e79d6843df2cfee/positive_somatic_control_2.tnseq.filtered.vcf.gz
==> STAGING COMPLETE (4 inputs)

Lines   total/split/joined/realigned/mismatch_removed/dup_removed/skipped:	187/16/0/34/0/0/0