[2026-06-08T17:36:24.484543Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:24.484971Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:24.484986Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:24.484992Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:24.484998Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX7BW4eF'
[2026-06-08T17:36:24.485003Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:24.485010Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:24.485015Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:24.485020Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-08T17:36:24.485025Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:24.485030Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:24.485035Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:24.485040Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:24.485045Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:24.485430Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:24.485522Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:24.492416Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:24.492948Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:24.493143Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:24.493363Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:24.493536Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.494289Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.494402Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.494688Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.494923Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.495033Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.495180Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.495557Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.495888Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.496163Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.497546Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.498085Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:24.498465Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.498643Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.498806Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.498895Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.499036Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.499119Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.499261Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.499341Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.499559Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.499735Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.500076Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.500162Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.500303Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.500380Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.500907Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.501028Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.501302Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.501659Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.501816Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.501903Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.502072Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.502152Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.502294Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.502376Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.502511Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.502662Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.503185Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.503264Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.503405Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.503485Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.503625Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.503703Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.503837Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.503914Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.504052Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.504142Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.504465Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.504980Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.505133Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.505236Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.505373Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.505450Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.505588Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.505664Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.505799Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.505882Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.506030Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.506154Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.506798Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.506876Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.507022Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.507105Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.524541Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.524922Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.525101Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.525366Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.525615Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.526250Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.526373Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.526698Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.526800Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.527027Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.528747Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.528890Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.529488Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.529833Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.530353Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.530807Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.531034Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.531652Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.531995Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:24.538477Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T17:36:24.539793Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T17:36:24.541480Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T17:36:24.544490Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T17:36:24.550099Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T17:36:24.551913Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T17:36:24.552949Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T17:36:24.660730Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.660780Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.660805Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.661515Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.661711Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.661985Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.667987Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T17:36:24.669542Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T17:36:24.670413Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T17:36:24.976915Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.977755Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.980560Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T17:36:25.041731Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.042558Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.044905Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T17:36:25.106369Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.106455Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.107240Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.107620Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.111173Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T17:36:25.139041Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T17:36:25.139793Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.140564Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.143419Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T17:36:25.144358Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.145047Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.147705Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T17:36:25.208871Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.209600Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.212381Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T17:36:25.574058Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.575229Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.579439Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T17:36:25.990534Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.990601Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.991383Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.991756Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.994975Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T17:36:25.995917Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T17:36:26.023825Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.023895Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.024570Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.024821Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.028675Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.029147Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T17:36:26.029833Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T17:36:26.030188Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.032625Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T17:36:26.061956Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.062659Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.065103Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:26.126459Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.127139Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.130083Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T17:36:26.159010Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.159769Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.162613Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T17:36:26.223770Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.224523Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.227200Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T17:36:26.256238Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.256969Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.259579Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T17:36:26.282816Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T17:36:26.288717Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.288782Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.289444Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.289668Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.292305Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T17:36:26.293304Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T17:36:26.321510Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.321591Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.322226Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.322463Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.324869Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T17:36:26.325946Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T17:36:26.354308Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.354362Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.354927Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.355287Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.358197Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T17:36:26.359047Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T17:36:26.387479Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.388130Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.390675Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T17:36:26.502015Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.502082Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.502120Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.502718Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.502984Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.503507Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.506247Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T17:36:26.508973Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T17:36:26.509809Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T17:36:26.568015Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.568643Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.571214Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T17:36:26.600370Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.600934Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.603924Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T17:36:26.765222Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.765878Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.768884Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T17:36:26.829911Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.830533Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.833153Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T17:36:26.862232Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.862760Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.865177Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T17:36:26.894408Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.894916Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.897227Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T17:36:26.926525Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.927038Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.930200Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T17:36:27.341559Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.342212Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.344745Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T17:36:27.374012Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.374605Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.376324Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.376994Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.377164Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T17:36:27.380135Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T17:36:27.409096Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.409695Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.412317Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T17:36:27.441508Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.441624Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.442202Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.442439Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.445184Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T17:36:27.446013Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T17:36:27.474396Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.475130Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.475470Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.476086Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.479066Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:27.480148Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T17:36:27.508164Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.508736Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.511708Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T17:36:27.512341Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.512827Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.515095Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T17:36:27.528469Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.528954Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.531559Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:27.544606Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.544673Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.545151Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.547510Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T17:36:27.560880Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.561450Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.563864Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T17:36:27.568990Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.576560Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.592134Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.655844Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.656238Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.658819Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T17:36:27.687987Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.751759Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.752146Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.754505Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T17:36:27.783852Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.997842Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.998250Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.000680Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T17:36:28.029929Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.143764Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.144135Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.146539Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T17:36:28.175709Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.175924Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.176023Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.176254Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.176478Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.179726Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.181023Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.182042Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:28.209064Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.209168Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.209362Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.209537Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.210506Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.212944Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.213873Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.243083Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.243143Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.243382Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.245470Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:28.274989Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.191142Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:35.020446Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:35.020446Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] 
[2026-06-08T17:36:35.020446Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:35.020491Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] 
[2026-06-08T17:36:35.020499Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:35.020506Z] [nf-3cda209da691fb2b98044cbe4a4e93ba-9eea6-pz5fd] [761_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec