[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXpSxELC/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXpSxELC/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXpSxELC/chr19_15162349-15162662.bed.gz.tbi
[2026-06-08T17:36:26.030524Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:26.031365Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:26.031388Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:26.031398Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:26.031405Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXpSxELC'
[2026-06-08T17:36:26.031410Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:26.031415Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:26.031423Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:26.031429Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:26.031438Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:26.031448Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:26.031454Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:26.031458Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:26.031462Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:26.032374Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:26.032511Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:26.038363Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:26.039247Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:26.039474Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:26.039975Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:26.040356Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.040756Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.040851Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.040923Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.041044Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.041111Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.041233Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.041295Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.041441Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.041622Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.042147Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.042524Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.043029Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.045993Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:26.046201Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.046484Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.046852Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.046929Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.047048Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.047115Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.047328Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.047397Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.047507Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.047578Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.047685Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.047761Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.048130Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.048423Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.048546Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.048619Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.048729Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.048795Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.048921Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.048981Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.049976Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.050235Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.050617Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.050692Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.050811Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.050882Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.050994Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.051054Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.051210Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.051275Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.052289Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.052657Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.052780Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.052919Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.053036Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.053102Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.053213Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.053277Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.053388Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.053449Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.053563Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.053626Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.053863Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.054092Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.054778Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.054849Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.054970Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.055033Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.055143Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.055206Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.055313Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.055411Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.070433Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.070569Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.070654Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.070822Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.070898Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.070984Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.071051Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.071160Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.072501Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:26.073045Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:26.073173Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.074122Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.074643Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.075460Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.077112Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.079436Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T17:36:26.080184Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.082591Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T17:36:26.083099Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.083902Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.084968Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.095528Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T17:36:26.098729Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T17:36:26.099270Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T17:36:26.104577Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T17:36:26.105984Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:26.106439Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T17:36:26.203470Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.203560Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.204314Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.204702Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.211033Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:26.211283Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T17:36:26.321535Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.322381Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.325511Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T17:36:27.038096Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.038940Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.042290Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T17:36:27.103574Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.104454Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.107957Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T17:36:27.219033Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.219856Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.223566Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T17:36:27.334736Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.335661Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.338811Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:27.500405Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.501215Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.504969Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T17:36:27.565788Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.566559Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.570103Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T17:36:27.631278Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.632111Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.635322Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T17:36:27.696442Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.697275Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.700639Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T17:36:28.112639Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.113461Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.117093Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T17:36:28.278156Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.278262Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.279036Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.279630Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.283134Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T17:36:28.284278Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T17:36:28.344116Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.344865Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.348230Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T17:36:28.459563Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.460404Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.463559Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T17:36:28.524646Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.524741Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.525523Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.525900Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.529527Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T17:36:28.530604Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T17:36:28.590555Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.591223Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.594647Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T17:36:28.806021Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.806123Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.806860Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.807199Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.811133Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T17:36:28.812799Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:28.872347Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.873056Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.876788Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T17:36:28.937571Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.938348Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.941819Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T17:36:28.946566Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.947265Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.950578Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T17:36:29.011380Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.012078Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.015330Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:29.076737Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.077493Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.081127Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T17:36:29.142022Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.142750Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.146118Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:29.207003Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.207679Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.211321Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T17:36:29.523265Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.523360Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.524006Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.524433Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.528076Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T17:36:29.557093Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.557774Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.560631Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T17:36:29.561011Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T17:36:29.561402Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.561884Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.564646Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.565447Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.566504Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T17:36:29.570128Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T17:36:29.598857Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.599498Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.603568Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:30.015288Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.015977Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.019285Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:30.080401Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.080992Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.085986Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T17:36:30.145152Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.145836Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.149404Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T17:36:30.210162Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.210758Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.214507Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T17:36:30.275306Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.276072Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.280129Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T17:36:30.441392Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.442068Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.446032Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T17:36:30.506816Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.507478Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.511124Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:30.515722Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.516148Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.519230Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T17:36:30.580409Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.581023Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.584572Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T17:36:30.645690Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.646268Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.648987Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T17:36:30.678340Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.678905Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.682172Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T17:36:30.682488Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.682900Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.686527Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T17:36:30.747226Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.747819Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.751311Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T17:36:30.780100Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.780652Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.783567Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T17:36:30.784317Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.784687Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.787957Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T17:36:30.816698Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.817231Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.820270Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T17:36:30.820824Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.853034Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.853105Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.853518Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.856577Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:30.917685Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.918168Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.921495Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:30.982600Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.648148Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.648668Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.651827Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T17:36:31.713188Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.877596Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.878061Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.880934Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T17:36:31.942335Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.106712Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.106783Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.107183Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.107513Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.110729Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T17:36:32.111895Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:32.171762Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.171833Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.438477Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.438929Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.441848Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:33.471003Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.471244Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.471373Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.471677Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.472015Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.476562Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:33.477914Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:33.479126Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:33.504539Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.504611Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.504812Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.505229Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.507867Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.509458Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:33.510197Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:33.541201Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.541268Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.541472Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.544024Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:33.573370Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.645231Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:44.920011Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:44.920011Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] 
[2026-06-08T17:36:44.920011Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:44.920062Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] 
[2026-06-08T17:36:44.920069Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:44.920076Z] [nf-e0fa56c66d88ae8756a97260d17ad8c1-b42df-5sdwm] [666_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec