File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0a119fc5e78356285a198e5b5ee33a/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-c4ocg968 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:40:10,105 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:40:10,996 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:40:11,174 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:40:12,279 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:40:12,348 - cnv_pipe.batch.run_model - INFO - Processing cluster 563 with 170 probes
2026-06-08 17:40:12,730 - cnv_pipe.batch.run_model.cluster563 - INFO - Child process started for cluster 563 with 170 probes
2026-06-08 17:41:06,552 - cnv_pipe.batch.run_model.cluster563 - INFO - Child process finished cluster 563. Wrote cluster_563_samples.csv and cluster_563_params.csv
2026-06-08 17:41:06,554 - cnv_pipe.batch.run_model - INFO - Cluster 563 finished in 54.21 seconds. Status: SUCCESS