File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/22e15f8c9d2cc3657f86d11a9fd1ca/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-q7sdkrez because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:41:05,925 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:41:06,832 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:41:07,005 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:41:08,004 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:41:08,168 - cnv_pipe.batch.run_model - INFO - Processing cluster 1046 with 194 probes
2026-06-08 17:41:08,545 - cnv_pipe.batch.run_model.cluster1046 - INFO - Child process started for cluster 1046 with 194 probes
2026-06-08 17:42:08,618 - cnv_pipe.batch.run_model.cluster1046 - INFO - Child process finished cluster 1046. Wrote cluster_1046_samples.csv and cluster_1046_params.csv
2026-06-08 17:42:08,619 - cnv_pipe.batch.run_model - INFO - Cluster 1046 finished in 60.45 seconds. Status: SUCCESS