Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/1f8d437761990ed890e1456d2296f8/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/dfc2e20c82c1819c37440b27c8430d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/dfc2e20c82c1819c37440b27c8430d/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-lumwxqyz because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:40:35,470 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:40:36,804 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:40:37,087 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:40:38,826 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:40:39,091 - cnv_pipe.batch.run_model - INFO - Processing cluster 840 with 199 probes
2026-06-08 17:40:39,715 - cnv_pipe.batch.run_model.cluster840 - INFO - Child process started for cluster 840 with 199 probes
2026-06-08 17:42:20,026 - cnv_pipe.batch.run_model.cluster840 - INFO - Child process finished cluster 840. Wrote cluster_840_samples.csv and cluster_840_params.csv
2026-06-08 17:42:20,028 - cnv_pipe.batch.run_model - INFO - Cluster 840 finished in 100.94 seconds. Status: SUCCESS