cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:147000001, elapsed 0.3s, est remaining 5.0s, peak mem 290MB, user 0.5s, sys 6.7s, output queue size 14
progress 10% @chr2:59000001, elapsed 0.5s, est remaining 4.5s, peak mem 494MB, user 1.1s, sys 13.2s, output queue size 41
progress 15% @chr2:218000001, elapsed 0.7s, est remaining 4.1s, peak mem 599MB, user 1.4s, sys 19.9s, output queue size 17
progress 20% @chr3:145000001, elapsed 0.9s, est remaining 3.8s, peak mem 728MB, user 2.0s, sys 26.1s, output queue size 17
progress 25% @chr4:109000001, elapsed 1.2s, est remaining 3.5s, peak mem 818MB, user 2.4s, sys 32.3s, output queue size 17
progress 30% @chr5:73000001, elapsed 1.4s, est remaining 3.2s, peak mem 881MB, user 2.8s, sys 38.6s, output queue size 34
progress 35% @chr6:50000001, elapsed 1.6s, est remaining 3.0s, peak mem 932MB, user 3.1s, sys 45.1s, output queue size 15
progress 40% @chr7:45000001, elapsed 1.8s, est remaining 2.7s, peak mem 968MB, user 3.4s, sys 51.5s, output queue size 15
progress 45% @chr8:74000001, elapsed 2.0s, est remaining 2.5s, peak mem 1049MB, user 3.8s, sys 57.9s, output queue size 65
progress 50% @chr9:65000001, elapsed 2.3s, est remaining 2.3s, peak mem 1142MB, user 4.3s, sys 64.4s, output queue size 20
progress 55% @chr10:109000001, elapsed 2.5s, est remaining 2.0s, peak mem 1205MB, user 4.6s, sys 70.9s, output queue size 7
progress 60% @chr11:111000001, elapsed 2.7s, est remaining 1.8s, peak mem 1262MB, user 5.0s, sys 77.4s, output queue size 12
progress 65% @chr13:13000001, elapsed 2.9s, est remaining 1.6s, peak mem 1313MB, user 5.3s, sys 84.1s, output queue size 15
progress 70% @chr14:55000001, elapsed 3.1s, est remaining 1.3s, peak mem 1349MB, user 5.8s, sys 90.6s, output queue size 6
progress 75% @chr16:8000001, elapsed 3.4s, est remaining 1.1s, peak mem 1409MB, user 6.3s, sys 97.4s, output queue size 12
progress 80% @chr17:77000001, elapsed 3.6s, est remaining 0.9s, peak mem 1448MB, user 6.7s, sys 104.2s, output queue size 7
progress 85% @chr20:21000001, elapsed 3.8s, est remaining 0.7s, peak mem 1505MB, user 7.0s, sys 111.0s, output queue size 4
progress 90% @chrX:42000001, elapsed 4.3s, est remaining 0.5s, peak mem 2747MB, user 10.5s, sys 114.3s, output queue size 114
progress 95% @chrY:38000001, elapsed 4.4s, est remaining 0.2s, peak mem 2765MB, user 13.6s, sys 115.7s, output queue size 276
progress 100% @chr21:41000001, elapsed 6.7s, est remaining 0.0s, peak mem 2786MB, user 26.0s, sys 119.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52290606
output file size: 74586810
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.005 user 0.013 sys 0.024 real
ReadQualCal::delayed_init: 1 calls 0.000 user 0.000 sys 0.022 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.970 user 16.444 sys 16.944 real
done: 1 calls 0.308 user 0.528 sys 0.839 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.007 user 0.001 sys 6.785 real
fetch: 3219322 calls 0.333 user 15.103 sys 12.764 real
fetch_reads: 3219322 calls 0.400 user 14.857 sys 12.864 real
fetch_ref: 13318 calls 0.042 user 0.060 sys 0.080 real
fetch_vcf: 13318 calls 1.319 user 0.111 sys 1.621 real
idle: 1840 calls 1.038 user 0.248 sys 116.831 real
init: 1 calls 0.000 user 0.000 sys 0.028 real
update: 13537 calls 6.884 user 1.657 sys 9.674 real
write: 3219322 calls 9.275 user 15.409 sys 24.527 real
overall: 2921345024 mem 30.492 user 120.978 sys 9.016 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.027 user 0.003 sys 0.027 real
done: 1 calls 0.055 user 0.005 sys 0.057 real
idle: 61 calls 0.003 user 0.000 sys 31.372 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81944576 mem 0.074 user 0.037 sys 1.052 real