[2026-06-08T17:36:23.120722Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:23.146805Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:23.146870Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:23.146889Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:23.146902Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXBQKqip'
[2026-06-08T17:36:23.146912Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:23.146926Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:23.146937Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:23.146947Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:23.146957Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:23.146968Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:23.146974Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:23.146979Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:23.146983Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:23.148013Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:23.148150Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:23.154324Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:23.155330Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:23.155616Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:23.155778Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:23.156074Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.156935Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.157374Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.157492Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.157802Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.158228Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.158562Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.159064Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.160165Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.161549Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.161896Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:23.161959Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.162119Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.162187Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.162304Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.162373Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.162519Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.162597Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.162720Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.162885Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.163330Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.163627Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.164108Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.164413Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.164758Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.165036Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.165451Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.165522Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.165632Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.165698Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.165810Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.165887Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.165998Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.166058Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.166173Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.166238Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.166352Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.166421Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.166628Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.166816Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.167253Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.167610Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.168044Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.168111Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.168219Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.168284Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.168398Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.168521Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.168666Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.168730Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.168840Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.168902Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.169047Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.169326Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.169793Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.169860Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.185375Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.185495Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.185571Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.185735Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.185804Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.185890Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.185959Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.186065Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.186133Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.186185Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:23.203465Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.204124Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.204577Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.205355Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.206029Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.208575Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.208925Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-08T17:36:23.209626Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.212208Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.213470Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.219645Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:23.224256Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-08T17:36:23.229237Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-08T17:36:23.230551Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-08T17:36:23.232808Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-08T17:36:23.234455Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-08T17:36:23.235324Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-08T17:36:23.332654Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.332730Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.333462Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.334106Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.339530Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-08T17:36:23.340586Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-08T17:36:24.253076Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.253915Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.257360Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-08T17:36:24.286439Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.287207Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.290550Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-08T17:36:24.352074Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.352976Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.356444Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-08T17:36:24.468322Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.469191Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.472725Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:24.534055Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.534842Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.538248Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-08T17:36:24.950941Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.951779Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.954989Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:24.968026Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.968646Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.972266Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-08T17:36:25.001161Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.001884Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.005115Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-08T17:36:25.005945Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.006505Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.009971Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:25.039060Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.039796Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.044065Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:25.104454Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.105152Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.108617Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-08T17:36:25.521002Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.521836Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.525863Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-08T17:36:25.687378Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.688137Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.692026Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-08T17:36:25.753153Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.753310Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.753992Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.754422Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.758178Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-08T17:36:25.759458Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T17:36:25.819545Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.819665Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.819696Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.820339Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.820963Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.823305Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.825483Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T17:36:25.827347Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-08T17:36:25.828860Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-08T17:36:25.888389Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.888506Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.888533Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.889176Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.889521Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.889851Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.894436Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T17:36:25.894865Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-08T17:36:25.897685Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-08T17:36:25.957006Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.957151Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.957747Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.958104Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.961612Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-08T17:36:25.993105Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:26.022852Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.022961Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.023553Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.023993Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.028907Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-08T17:36:26.030333Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-08T17:36:26.090473Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.091147Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.095521Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-08T17:36:26.156095Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.156805Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.160489Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:26.173308Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.173883Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.177760Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-08T17:36:26.206070Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.206702Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.210224Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-08T17:36:26.223072Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.223616Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.226678Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-08T17:36:26.256107Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.256687Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.260265Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:26.260530Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.260958Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.264662Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-08T17:36:26.293671Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.294284Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.297805Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-08T17:36:26.358956Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.359564Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.362964Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-08T17:36:26.825523Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.825636Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.826155Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.826499Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.830224Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-08T17:36:26.862815Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-08T17:36:26.892255Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.892353Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.892938Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.893402Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.896831Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-08T17:36:26.897762Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:26.958425Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.323655Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.324228Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.327776Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-08T17:36:27.388815Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.904596Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.905161Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.908902Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-08T17:36:27.970281Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.084695Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.085218Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.088439Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-08T17:36:28.149629Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.263954Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.264447Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.267446Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-08T17:36:28.328715Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.693803Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.694324Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.697437Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-08T17:36:28.758611Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.758705Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.759118Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.762529Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-08T17:36:28.791668Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.658043Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.658490Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.661349Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:29.690485Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.690731Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.690871Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.691280Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.691944Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.695651Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:29.696886Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:29.723464Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:29.725004Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.725070Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.725093Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.725302Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.725827Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.728487Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:29.729511Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:29.758045Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.758126Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.758314Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.760794Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:29.790215Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.714832Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:42.036070Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:42.036070Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] 
[2026-06-08T17:36:42.036070Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:42.036149Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] 
[2026-06-08T17:36:42.036158Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:42.036167Z] [nf-438c0d4b6a6f12f9d4c9a7385c15bc0a-a0fd7-c65bm] [600_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec