Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/control_truth/na12878/na12878_germline_cnv_dels.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/de4eeabbb0923c762f9a1d4de68df1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/de4eeabbb0923c762f9a1d4de68df1/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/3e31e2aa52c067e8d9db4d32e65b81/germline_control_2.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/3e31e2aa52c067e8d9db4d32e65b81/germline_control_2.vcf.gz
==> STAGING COMPLETE (5 inputs)

[E::bcf_hdr_parse_line] Could not parse the header line: "##ABNORMAL_PLOIDY_CHR=<chr1:0,chr12:0,chr14:0,chr5:0,chr6:0,chr7:4>"
[E::bcf_hdr_parse_line] Could not parse the header line: "##ABNORMAL_PLOIDY_CHR=<chr1:0,chr12:0,chr14:0,chr5:0,chr6:0,chr7:4>"
[E::bcf_hdr_parse_line] Could not parse the header line: "##ABNORMAL_PLOIDY_CHR=<chr1:0,chr12:0,chr14:0,chr5:0,chr6:0,chr7:4>"