File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/1550a5f59c535fd1cdd947021f0bb9/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXBm8GxG/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXBm8GxG/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXBm8GxG/chr19_15162349-15162662.bed.gz.tbi
[2026-06-08T17:36:27.947802Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:27.960546Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:27.960581Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:27.960588Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:27.960593Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXBm8GxG'
[2026-06-08T17:36:27.960602Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:27.960613Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:27.960623Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:27.960633Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:27.960639Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:27.960643Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:27.960651Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:27.960660Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:27.960667Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:27.961530Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:27.961736Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:27.968264Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:27.969579Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:27.969726Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:27.970066Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:27.970558Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.971083Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.971204Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.971291Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.971424Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.971515Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.971732Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.972070Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.972557Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.972735Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.972906Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.973511Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.974199Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.974571Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.977283Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.978219Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:27.978435Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.978536Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.978665Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.978734Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.978938Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.979033Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.979323Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.979734Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.979854Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.979918Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.980047Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.980116Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.980229Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.980295Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.980412Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.980481Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.980622Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.980686Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.980942Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.981365Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.981500Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.981569Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.981695Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.981768Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.981884Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.981949Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.982060Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.982127Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.983246Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.983579Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.983705Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.983770Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.983955Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.984022Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.984133Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.984197Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.984311Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.984373Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.984522Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.984643Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.984977Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.985485Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.986267Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.986368Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.986492Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.986558Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.986680Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.986746Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.986860Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.986953Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:28.001267Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:28.001416Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:28.001510Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:28.001695Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:28.001773Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:28.001863Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:28.001938Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:28.002359Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:28.004875Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:28.004956Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:28.071159Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.072069Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.072452Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.072810Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.073933Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.075308Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.077623Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.078678Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T17:36:28.079702Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.081250Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.088397Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T17:36:28.089160Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T17:36:28.093424Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T17:36:28.097052Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:28.098489Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:28.100215Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T17:36:28.101676Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T17:36:28.200071Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.200386Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.201460Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.201872Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.202449Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.209691Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T17:36:28.210508Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.210678Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T17:36:28.216443Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T17:36:29.378650Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.379599Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.383243Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T17:36:29.695009Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.696578Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.697130Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.699858Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.700332Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T17:36:29.703785Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T17:36:29.764941Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.765712Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.769645Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T17:36:30.031163Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.031254Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.032079Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.032435Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.036281Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:30.038325Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T17:36:30.097240Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.097353Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.098077Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.098610Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.103094Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T17:36:30.104215Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T17:36:30.214010Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.214095Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.214798Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.215287Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.219231Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T17:36:30.220588Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T17:36:30.279997Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.280121Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.280802Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.281381Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.286050Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T17:36:30.287764Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T17:36:30.315460Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.316261Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.319970Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T17:36:30.348732Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.349556Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.353097Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T17:36:30.366119Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.366826Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.370567Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T17:36:30.399220Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.399975Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.403414Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T17:36:30.464550Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.465312Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.469031Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:30.630197Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.631031Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.635776Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T17:36:30.746907Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.747822Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.760807Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:30.912640Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.913535Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.917092Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T17:36:30.978206Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.979057Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.982776Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T17:36:30.987089Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.987677Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.991241Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T17:36:31.052386Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.052488Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.053110Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.053480Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.057953Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:31.058943Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T17:36:31.086957Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.087719Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.091283Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T17:36:31.653703Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.654457Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.658172Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T17:36:31.719063Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.719180Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.719807Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.720211Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.723805Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:31.724781Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T17:36:31.784843Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.785529Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.791146Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T17:36:31.950753Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.951548Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.955994Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T17:36:32.016697Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.016809Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.017420Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.017841Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.022059Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T17:36:32.023516Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T17:36:32.082345Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.083010Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.086317Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T17:36:32.147401Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.148048Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.151216Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T17:36:32.412896Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.413559Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.417165Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T17:36:32.478233Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.478909Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.482078Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T17:36:32.495054Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.495656Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.498898Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T17:36:32.527838Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.528430Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.531151Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.531926Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.532505Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T17:36:32.535423Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T17:36:32.596649Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.597233Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.600361Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:32.661371Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.661942Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.665084Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:32.726372Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.726977Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.729950Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:32.791310Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.791929Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.795171Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T17:36:33.307561Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.308142Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.312324Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T17:36:33.373074Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.373698Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.377633Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:33.438419Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.438910Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.442953Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T17:36:33.455393Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.455503Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.455978Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.456319Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.459535Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T17:36:33.461237Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T17:36:33.488389Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.488866Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.492314Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T17:36:33.492578Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.496069Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.527920Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.143487Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.144012Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.147907Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T17:36:34.160692Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.161297Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.164646Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:34.194049Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.195008Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.259178Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.259655Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.263492Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:34.292458Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.292962Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.296189Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T17:36:34.297053Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.328996Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.443265Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.443774Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.447255Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T17:36:34.475987Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.476242Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.476383Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.476739Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.477286Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.481217Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:34.482786Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:34.483915Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:34.510199Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.510276Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.510301Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.510513Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.510861Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.514045Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:34.539752Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:34.542998Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.543075Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.543270Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.546705Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:34.575762Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.549628Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:46.849302Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:46.849302Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] 
[2026-06-08T17:36:46.849302Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:46.849380Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] 
[2026-06-08T17:36:46.849387Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:46.849395Z] [nf-3f1550a5f59c535fd1cdd947021f0bb9-4b506-dgksh] [597_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec