Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/a37300239bdfe3c4264405d51f55f2/negative_somatic_control_2.snv_indel.phased.vep.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/42957f447fa2034f6f805010e3079d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/42957f447fa2034f6f805010e3079d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/hotspots/hotspot_definitions.tsv
==> STAGING COMPLETE (4 inputs)

Loaded 73 hotspot definitions
Processed 171 variants, labeled 0 as HOTSPOT