cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.1s, est remaining 1.5s, peak mem 75MB, user 0.0s, sys 0.1s, output queue size 374
progress 10% @chr15:40899144, elapsed 0.1s, est remaining 1.3s, peak mem 78MB, user 0.1s, sys 0.3s, output queue size 2617
progress 15% @chr15:63588702, elapsed 0.2s, est remaining 1.3s, peak mem 78MB, user 0.1s, sys 0.4s, output queue size 5244
progress 20% @chr15:87989891, elapsed 0.3s, est remaining 1.2s, peak mem 93MB, user 0.2s, sys 0.6s, output queue size 7524
progress 25% @chr16:1953956, elapsed 0.3s, est remaining 1.0s, peak mem 96MB, user 0.2s, sys 0.6s, output queue size 9213
progress 30% @chr16:23529744, elapsed 0.4s, est remaining 1.0s, peak mem 102MB, user 0.3s, sys 0.8s, output queue size 11694
progress 35% @chr16:66569936, elapsed 0.5s, est remaining 0.9s, peak mem 111MB, user 0.3s, sys 0.9s, output queue size 14296
progress 40% @chr16:89286670, elapsed 0.6s, est remaining 0.8s, peak mem 120MB, user 0.4s, sys 1.1s, output queue size 1820
progress 45% @chr17:10309522, elapsed 0.7s, est remaining 0.8s, peak mem 126MB, user 0.4s, sys 1.3s, output queue size 4434
progress 50% @chr17:35577038, elapsed 0.8s, est remaining 0.8s, peak mem 138MB, user 0.4s, sys 1.5s, output queue size 7034
progress 55% @chr17:45115344, elapsed 0.9s, est remaining 0.7s, peak mem 141MB, user 0.5s, sys 1.6s, output queue size 9274
progress 60% @chr17:68434556, elapsed 1.0s, est remaining 0.6s, peak mem 150MB, user 0.5s, sys 1.8s, output queue size 11811
progress 65% @chr18:5969393, elapsed 1.1s, est remaining 0.6s, peak mem 153MB, user 0.6s, sys 2.0s, output queue size 14526
progress 70% @chr18:62574057, elapsed 1.1s, est remaining 0.5s, peak mem 156MB, user 0.6s, sys 2.1s, output queue size 16900
progress 75% @chr19:6420073, elapsed 1.3s, est remaining 0.4s, peak mem 165MB, user 0.7s, sys 2.3s, output queue size 19290
progress 80% @chr19:15265354, elapsed 1.4s, est remaining 0.3s, peak mem 171MB, user 0.7s, sys 2.5s, output queue size 21549
progress 85% @chr19:36936746, elapsed 1.5s, est remaining 0.3s, peak mem 180MB, user 0.8s, sys 2.7s, output queue size 23863
progress 90% @chr19:46493558, elapsed 1.6s, est remaining 0.2s, peak mem 192MB, user 0.8s, sys 2.8s, output queue size 26034
progress 95% @chr20:36934998, elapsed 1.7s, est remaining 0.1s, peak mem 198MB, user 0.8s, sys 3.0s, output queue size 28675
progress 100% @chr20:63875816, elapsed 1.7s, est remaining 0.0s, peak mem 207MB, user 0.9s, sys 3.2s, output queue size 31111
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586810
output file size: 22310
reads: 1001133
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.002 user 0.001 sys 0.017 real
advance: 49760 calls 0.005 user 0.002 sys 0.026 real
calc: 97912 calls 0.000 user 0.004 sys 0.017 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.001 sys 3.822 real
fetch: 97912 calls 0.001 user 0.001 sys 0.018 real
fetch_ref: 97912 calls 0.032 user 0.009 sys 0.349 real
idle: 63 calls 0.005 user 0.006 sys 37.692 real
init: 1 calls 0.044 user 0.000 sys 0.042 real
region: 97912 calls 0.000 user 0.002 sys 0.020 real
tracker: 97912 calls 0.003 user 0.002 sys 0.091 real
overall: 217190400 mem 1.313 user 4.879 sys 4.955 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory