cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.1s, est remaining 1.2s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 629
progress 10% @chr2:19997134, elapsed 0.1s, est remaining 1.1s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 309
progress 15% @chr2:189064557, elapsed 0.2s, est remaining 1.0s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 1473
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 1.0s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 306
progress 25% @chr4:88442234, elapsed 0.3s, est remaining 0.9s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 1270
progress 30% @chr5:147343006, elapsed 0.4s, est remaining 0.9s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 50
progress 35% @chr6:127144950, elapsed 0.4s, est remaining 0.8s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 80
progress 40% @chr7:128806688, elapsed 0.5s, est remaining 0.7s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 525
progress 45% @chr9:1051614, elapsed 0.5s, est remaining 0.7s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 1838
progress 50% @chr10:32919885, elapsed 0.6s, est remaining 0.6s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 127
progress 55% @chr11:48263861, elapsed 0.7s, est remaining 0.5s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 239
progress 60% @chr12:21908077, elapsed 0.7s, est remaining 0.5s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 1799
progress 65% @chr13:49187122, elapsed 0.8s, est remaining 0.4s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 6950
progress 70% @chr15:42684116, elapsed 0.8s, est remaining 0.3s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 9836
progress 75% @chr16:30925731, elapsed 0.8s, est remaining 0.3s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 6728
progress 80% @chr17:42540950, elapsed 0.9s, est remaining 0.2s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 17426
progress 85% @chr19:5686416, elapsed 0.9s, est remaining 0.2s, peak mem 334MB, user 0.0s, sys 0.1s, output queue size 27831
progress 90% @chr19:55669083, elapsed 1.0s, est remaining 0.1s, peak mem 334MB, user 0.0s, sys 0.1s, output queue size 8428
progress 95% @chr22:37024192, elapsed 1.3s, est remaining 0.1s, peak mem 2491MB, user 5.3s, sys 2.3s, output queue size 3228
progress 100% @chrY:12918043, elapsed 1.3s, est remaining 0.0s, peak mem 2491MB, user 5.4s, sys 2.3s, output queue size 304
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395364
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.350 user 0.172 sys 2.075 real
done: 1 calls 0.268 user 0.128 sys 0.402 real
execute: 1 calls 0.002 user 0.010 sys 1.347 real
fetch_reads: 208647 calls 0.065 user 0.001 sys 0.148 real
fetch_ref: 2042 calls 0.012 user 0.012 sys 0.023 real
fetch_vcf: 2042 calls 0.728 user 0.047 sys 0.906 real
idle: 92 calls 0.002 user 0.002 sys 31.764 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 3.843 user 2.077 sys 6.522 real
overall: 2612531200 mem 8.359 user 8.806 sys 2.718 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory