.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:CONCAT_WHATSHAP_VCFS (positive_somatic_control_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/4e649f8b3a03cf2bf0be7ca3ba92e8/.command.log
Size: 726 bytes
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:CONCAT_WHATSHAP_VCFS (positive_somatic_control_2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/4e649f8b3a03cf2bf0be7ca3ba92e8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/87c3fcf27ba11c4d2eda1391b071eb/positive_somatic_control_2.snv_indel.whatshap.chr5.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/4e649f8b3a03cf2bf0be7ca3ba92e8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/eb9abf67159d18ba29b37e036b103d/positive_somatic_control_2.snv_indel.whatshap.chr21.phased.vcf.gz
==> STAGING COMPLETE (4 inputs)

Checking the headers and starting positions of 2 files
ls: positive_somatic_control_2.snv_indel.phased.vcf.gz.csi: No such file or directory