cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --read_filter QualCalFilter,table=HCC1395_BL.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table.post --algo ReadWriter HCC1395_BL.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:165000001, elapsed 0.1s, est remaining 2.3s, peak mem 350MB, user 0.2s, sys 3.0s, output queue size 11
progress 10% @chr2:76000001, elapsed 0.2s, est remaining 2.0s, peak mem 533MB, user 0.5s, sys 5.7s, output queue size 41
progress 15% @chr2:235000001, elapsed 0.3s, est remaining 1.8s, peak mem 614MB, user 0.8s, sys 8.3s, output queue size 11
progress 20% @chr3:156000001, elapsed 0.4s, est remaining 1.6s, peak mem 701MB, user 1.0s, sys 11.0s, output queue size 16
progress 25% @chr4:117000001, elapsed 0.5s, est remaining 1.5s, peak mem 779MB, user 1.2s, sys 13.7s, output queue size 12
progress 30% @chr5:88000001, elapsed 0.6s, est remaining 1.4s, peak mem 836MB, user 1.5s, sys 16.3s, output queue size 29
progress 35% @chr6:65000001, elapsed 0.7s, est remaining 1.3s, peak mem 935MB, user 1.6s, sys 19.0s, output queue size 17
progress 40% @chr7:56000001, elapsed 0.8s, est remaining 1.2s, peak mem 1001MB, user 1.8s, sys 21.7s, output queue size 13
progress 45% @chr8:57000001, elapsed 0.9s, est remaining 1.1s, peak mem 1124MB, user 2.1s, sys 24.3s, output queue size 3
progress 50% @chr9:74000001, elapsed 1.0s, est remaining 1.0s, peak mem 1208MB, user 2.3s, sys 27.1s, output queue size 17
progress 55% @chr10:122000001, elapsed 1.1s, est remaining 0.9s, peak mem 1262MB, user 2.5s, sys 30.0s, output queue size 22
progress 60% @chr11:113000001, elapsed 1.3s, est remaining 0.9s, peak mem 1337MB, user 2.8s, sys 35.7s, output queue size 27
progress 65% @chr13:33000001, elapsed 1.5s, est remaining 0.8s, peak mem 1397MB, user 3.2s, sys 42.8s, output queue size 35
progress 70% @chr14:55000001, elapsed 1.8s, est remaining 0.8s, peak mem 1451MB, user 3.5s, sys 49.6s, output queue size 12
progress 75% @chr15:96000001, elapsed 2.0s, est remaining 0.7s, peak mem 1499MB, user 3.8s, sys 56.5s, output queue size 19
progress 80% @chr17:75000001, elapsed 2.2s, est remaining 0.6s, peak mem 1523MB, user 4.2s, sys 63.3s, output queue size 9
progress 85% @chr20:39000001, elapsed 2.5s, est remaining 0.4s, peak mem 1604MB, user 4.5s, sys 70.2s, output queue size 15
progress 90% @chrX:43000001, elapsed 2.8s, est remaining 0.3s, peak mem 2759MB, user 7.0s, sys 73.5s, output queue size 114
progress 95% @chrY:38000001, elapsed 3.0s, est remaining 0.2s, peak mem 2783MB, user 10.9s, sys 76.0s, output queue size 276
progress 100% @chr21:41000001, elapsed 5.0s, est remaining 0.0s, peak mem 2798MB, user 21.9s, sys 79.7s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 51395364
output file size: 71692772
reads: 1001089
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.024 real
ReadQualCal::delayed_init: 1 calls 0.005 user 0.001 sys 0.023 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.564 user 9.803 sys 11.573 real
done: 1 calls 0.326 user 0.352 sys 0.679 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.006 user 0.000 sys 5.077 real
fetch: 3219322 calls 0.241 user 9.582 sys 9.646 real
fetch_reads: 3219322 calls 0.368 user 9.866 sys 9.719 real
fetch_ref: 13103 calls 0.034 user 0.011 sys 0.062 real
fetch_vcf: 13103 calls 1.329 user 0.059 sys 1.403 real
idle: 1589 calls 0.865 user 0.219 sys 81.172 real
init: 1 calls 0.007 user 0.001 sys 0.029 real
update: 13298 calls 6.266 user 1.716 sys 8.194 real
write: 3219322 calls 7.758 user 9.687 sys 17.801 real
overall: 2933952512 mem 25.559 user 81.230 sys 6.413 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_BL.table --after HCC1395_BL.table.post HCC1395_BL.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.018 user 0.002 sys 0.025 real
done: 1 calls 0.037 user 0.013 sys 0.055 real
idle: 61 calls 0.002 user 0.000 sys 31.334 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81944576 mem 0.051 user 0.056 sys 1.050 real