cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18630847, elapsed 0.1s, est remaining 1.5s, peak mem 75MB, user 0.0s, sys 0.2s, output queue size 1307
progress 10% @chr1:37794183, elapsed 0.2s, est remaining 1.6s, peak mem 75MB, user 0.1s, sys 0.4s, output queue size 3958
progress 15% @chr1:65405870, elapsed 0.3s, est remaining 1.8s, peak mem 78MB, user 0.1s, sys 0.5s, output queue size 6682
progress 20% @chr1:113838544, elapsed 0.4s, est remaining 1.7s, peak mem 78MB, user 0.2s, sys 0.7s, output queue size 9446
progress 25% @chr1:155250276, elapsed 0.5s, est remaining 1.5s, peak mem 78MB, user 0.2s, sys 0.9s, output queue size 920
progress 30% @chr1:179102287, elapsed 0.6s, est remaining 1.5s, peak mem 90MB, user 0.3s, sys 1.0s, output queue size 3394
progress 35% @chr1:206584387, elapsed 0.7s, est remaining 1.3s, peak mem 96MB, user 0.3s, sys 1.2s, output queue size 5824
progress 40% @chr1:246986967, elapsed 0.8s, est remaining 1.1s, peak mem 102MB, user 0.4s, sys 1.3s, output queue size 8231
progress 45% @chr2:32549313, elapsed 0.8s, est remaining 1.0s, peak mem 111MB, user 0.4s, sys 1.4s, output queue size 10518
progress 50% @chr2:72492318, elapsed 0.9s, est remaining 0.9s, peak mem 117MB, user 0.5s, sys 1.6s, output queue size 13005
progress 55% @chr2:113499257, elapsed 0.9s, est remaining 0.7s, peak mem 129MB, user 0.5s, sys 1.8s, output queue size 15537
progress 60% @chr2:171006147, elapsed 1.0s, est remaining 0.6s, peak mem 141MB, user 0.6s, sys 2.0s, output queue size 18233
progress 65% @chr2:202779533, elapsed 1.0s, est remaining 0.5s, peak mem 144MB, user 0.6s, sys 2.1s, output queue size 20507
progress 70% @chr2:233772261, elapsed 1.1s, est remaining 0.5s, peak mem 159MB, user 0.6s, sys 2.3s, output queue size 22984
progress 75% @chr3:25619862, elapsed 1.1s, est remaining 0.4s, peak mem 168MB, user 0.7s, sys 2.4s, output queue size 25205
progress 80% @chr3:49807736, elapsed 1.2s, est remaining 0.3s, peak mem 177MB, user 0.7s, sys 2.6s, output queue size 27682
progress 85% @chr3:101859272, elapsed 1.2s, est remaining 0.2s, peak mem 192MB, user 0.7s, sys 2.8s, output queue size 30318
progress 90% @chr3:140532324, elapsed 1.3s, est remaining 0.1s, peak mem 207MB, user 0.8s, sys 3.0s, output queue size 32924
progress 95% @chr3:187741772, elapsed 1.3s, est remaining 0.1s, peak mem 210MB, user 0.8s, sys 3.1s, output queue size 35322
progress 100% @chr4:27002217, elapsed 1.4s, est remaining 0.0s, peak mem 219MB, user 0.8s, sys 3.3s, output queue size 37558
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692772
output file size: 22305
reads: 1001089
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.003 user 0.000 sys 0.018 real
advance: 51084 calls 0.005 user 0.000 sys 0.026 real
calc: 100735 calls 0.001 user 0.001 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.007 user 0.001 sys 3.412 real
fetch: 100735 calls 0.001 user 0.000 sys 0.018 real
fetch_ref: 100735 calls 0.061 user 0.019 sys 0.367 real
idle: 63 calls 0.003 user 0.004 sys 36.814 real
init: 1 calls 0.040 user 0.010 sys 0.043 real
region: 100735 calls 0.002 user 0.000 sys 0.021 real
tracker: 100735 calls 0.013 user 0.005 sys 0.093 real
overall: 229773312 mem 1.259 user 4.958 sys 4.531 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory