Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/1f8d437761990ed890e1456d2296f8/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/454ca9e68293b1d705869616549442/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/454ca9e68293b1d705869616549442/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-bfufc6lf because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:39:23,953 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:39:24,889 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:39:25,070 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:39:26,224 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:39:26,298 - cnv_pipe.batch.run_model - INFO - Processing cluster 437 with 195 probes
2026-06-08 17:39:26,701 - cnv_pipe.batch.run_model.cluster437 - INFO - Child process started for cluster 437 with 195 probes
2026-06-08 17:40:26,919 - cnv_pipe.batch.run_model.cluster437 - INFO - Child process finished cluster 437. Wrote cluster_437_samples.csv and cluster_437_params.csv
2026-06-08 17:40:26,921 - cnv_pipe.batch.run_model - INFO - Cluster 437 finished in 60.62 seconds. Status: SUCCESS