File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/eca02bab50d4af8379d8b3f3e17745/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
[2026-06-08T17:36:23.367815Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:23.368916Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:23.368931Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:23.368936Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:23.368941Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXN0pll0'
[2026-06-08T17:36:23.368945Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:23.368949Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:23.368953Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:23.368957Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:23.368960Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:23.368964Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:23.368968Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:23.368973Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:23.368977Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:23.369709Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:23.369844Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:23.375497Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:23.376208Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:23.376479Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:23.376694Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:23.376934Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.377764Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.377855Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.377938Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.378107Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.378271Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.378780Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.379239Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.379863Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.381021Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.382401Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.382621Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:23.383410Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.383662Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.383968Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.384421Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.384553Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.384621Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.384736Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.384803Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.385007Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.385076Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.385191Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.385259Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.385372Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.385434Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.385706Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386071Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386188Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386255Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386366Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386446Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386557Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386619Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386754Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386818Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386927Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386993Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.387250Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.387652Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.387768Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.387829Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.387940Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.388004Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.388113Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.388178Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.388291Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.388400Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.388545Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.388622Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.388989Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.389476Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.389594Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.389657Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.389770Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.389836Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.389951Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.390017Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.390126Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.390190Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.390305Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.390368Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.390531Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.390686Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.391250Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.391320Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.391431Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.391497Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.391605Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.391669Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.391778Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.391841Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.391946Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.392009Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.409594Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.410330Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.410574Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.410870Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.411132Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.411933Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.412135Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.412302Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.412385Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.412868Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.413049Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.413151Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.413207Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:23.414100Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.415315Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.416239Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.417073Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.417747Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.418667Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.428019Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T17:36:23.431039Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T17:36:23.431267Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T17:36:23.434142Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T17:36:23.438147Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T17:36:23.439491Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:23.444176Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T17:36:23.555620Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.556387Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.560972Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:24.223356Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.224282Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.228333Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:24.289356Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.290268Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.294121Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T17:36:24.405280Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.405385Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.406184Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.406613Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.410212Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T17:36:24.411462Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T17:36:24.471103Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.471838Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.475218Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:24.504324Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.505072Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.507490Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.508007Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T17:36:24.509071Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.511490Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:24.525005Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.525784Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.529173Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T17:36:24.541691Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.542402Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.545082Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T17:36:24.574433Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.575167Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.578012Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T17:36:24.739857Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.740728Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.744244Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T17:36:24.780103Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T17:36:24.805387Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.805460Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.806216Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.806749Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.810260Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:24.811374Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T17:36:25.071541Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.072392Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.075975Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:25.137237Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.138076Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.140979Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T17:36:25.954554Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.955433Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.959162Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T17:36:26.019958Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.020790Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.024328Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:26.235803Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.236626Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.239881Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T17:36:26.244790Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.245592Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.248577Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T17:36:26.277616Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.278416Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.282439Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:26.282657Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.283416Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.286369Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T17:36:26.347947Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.348052Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.348892Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.349317Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.352968Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T17:36:26.354008Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:26.357770Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.358498Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.361951Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T17:36:26.391009Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.391774Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.394934Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:26.424186Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.424934Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.428613Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T17:36:26.428879Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.429492Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.432589Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T17:36:26.493871Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.493986Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.494024Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.494754Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.495328Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.495833Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.499102Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T17:36:26.502390Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:26.503730Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:26.562263Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.562485Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.562630Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.563293Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.563567Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.564127Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.568092Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:26.572052Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T17:36:26.573192Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:26.577190Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.577823Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.581291Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T17:36:26.609896Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.610614Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.613952Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T17:36:26.675116Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.675845Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.679906Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:27.041605Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.042345Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.045641Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:27.074687Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.075386Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.078325Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:27.107441Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.108099Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.111135Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:27.112011Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.112511Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.115319Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T17:36:27.144431Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.145058Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.147916Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T17:36:27.149232Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.149742Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.152593Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:27.214108Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.214773Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.217672Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:27.278960Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.279630Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.282382Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T17:36:27.644696Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.645451Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.648627Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T17:36:27.810410Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.811089Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.814333Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T17:36:27.875621Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.876289Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.879433Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:27.940551Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.941243Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.944432Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T17:36:28.005406Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.006049Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.009411Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T17:36:28.070679Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.071327Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.074775Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T17:36:28.236403Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.237080Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.240974Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T17:36:28.253299Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.253881Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.257582Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T17:36:28.286835Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.287443Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.291007Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T17:36:28.291570Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.292056Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.295858Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T17:36:28.324428Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.325039Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.328622Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:28.389474Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.390013Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.393230Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T17:36:28.454524Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.454618Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.455141Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.455509Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.459207Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T17:36:28.460345Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:28.520066Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.520172Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.935705Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.936240Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.939996Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T17:36:29.000880Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.065169Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.065717Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.069368Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T17:36:29.130222Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.445346Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.445914Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.449330Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:29.510413Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.510516Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.510983Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.514109Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T17:36:29.575359Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.240951Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.241454Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.244360Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T17:36:30.305551Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.970973Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.971447Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.974538Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T17:36:31.003688Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.003966Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.004105Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.004433Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.004664Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.009435Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:31.010999Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:31.011835Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:31.037819Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.037896Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.038124Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.038840Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.039521Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.042151Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:31.043045Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:31.072302Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.072382Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.072573Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.075084Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:31.104641Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.975371Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:42.257383Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:42.257383Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] 
[2026-06-08T17:36:42.257383Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:42.257439Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] 
[2026-06-08T17:36:42.257451Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:42.257458Z] [nf-8deca02bab50d4af8379d8b3f3e17745-9887c-ptcq2] [594_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec