File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/507c0407c4fe7bc74b998221be1097/.command.log
Size
102.5 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr6_138229684-138229952.bed)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/af0c565907198621c40991bd318828/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/507c0407c4fe7bc74b998221be1097/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/af0c565907198621c40991bd318828/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/507c0407c4fe7bc74b998221be1097/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXX93wZj/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXX93wZj/chr6_138229684-138229952.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXX93wZj/chr6_138229684-138229952.bed.gz.tbi
[2026-06-08T17:36:19.473622Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:19.475152Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:19.475177Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:19.475182Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:19.475186Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXX93wZj'
[2026-06-08T17:36:19.475190Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:19.475199Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:19.475202Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:19.475206Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T17:36:19.475209Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:19.475213Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:19.475216Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:19.475220Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:19.475223Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:19.475699Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:19.475804Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:19.481541Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:19.482268Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:19.482643Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:19.483144Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:19.483465Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.484130Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.484239Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.484529Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.484679Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.485240Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.485618Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.485905Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.486026Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.486839Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.487153Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.487406Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.487481Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.487870Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.491673Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.491928Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.492000Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.492245Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.492357Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.492533Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:19.492840Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.493043Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.493272Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.493532Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.493655Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.494126Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.494742Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.494814Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.494928Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.494995Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.495110Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.495234Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.495390Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.495454Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.495566Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.495739Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.496174Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.496670Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.496803Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.496866Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.496981Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.497042Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.497155Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.497225Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.497333Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.497396Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.497513Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.497576Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.497773Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.497856Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.498069Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.498400Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499084Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499151Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499264Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499327Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499433Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499500Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499604Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499669Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499781Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499842Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.499952Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.500013Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.500325Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.501013Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.501135Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.501194Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.501309Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.501374Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.501481Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.501544Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.501648Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.501711Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.503770Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.504367Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.504510Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.504586Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.504705Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.504772Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.504879Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.504938Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.505049Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.505110Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.505217Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.505282Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.505505Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.505783Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.506538Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.506617Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.506734Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.506798Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.506909Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.506975Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.507147Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.507216Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.507341Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.507404Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.507784Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.507914Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.508457Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.509328Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.509677Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.510681Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.511494Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.511573Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.511679Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.511745Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.511856Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.511922Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.515935Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.516057Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.516375Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.516452Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.529221Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.530965Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.531590Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.532053Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.532392Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.532796Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.533900Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.534304Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.534622Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.535018Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.535787Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.536791Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.537882Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.538872Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.539441Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.541051Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.546749Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T17:36:19.552823Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T17:36:19.557139Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-06-08T17:36:19.557758Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T17:36:19.562741Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:19.564077Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T17:36:19.567796Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.568738Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T17:36:19.569941Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:19.570377Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:19.685696Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.687006Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.691254Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-06-08T17:36:20.103272Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.104631Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.108457Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T17:36:20.373281Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-06-08T17:36:20.420299Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.421765Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.425799Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-06-08T17:36:20.586998Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.588370Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.592015Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-08T17:36:20.703810Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.705220Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.709214Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T17:36:20.721488Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.722819Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726279Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T17:36:20.755446Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.756834Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.761206Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T17:36:20.789885Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.791176Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.795665Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-06-08T17:36:20.823954Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.825281Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.828631Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-08T17:36:20.890026Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.890149Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.891408Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.891933Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.895888Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T17:36:20.897378Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T17:36:20.956854Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.958352Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.959071Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.962151Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.963752Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-06-08T17:36:20.964851Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T17:36:21.026761Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.028042Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.031580Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-06-08T17:36:21.243473Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.244819Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.248405Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:21.309532Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.310777Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.314579Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-06-08T17:36:21.315131Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.316216Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.319690Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-06-08T17:36:21.430978Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.432285Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.435821Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T17:36:21.497036Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.498326Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.502508Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T17:36:21.563342Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.564648Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.568688Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T17:36:21.629285Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.630540Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.634104Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-06-08T17:36:21.745252Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.746579Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.749950Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T17:36:21.811266Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.812499Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.815906Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-06-08T17:36:22.228736Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.229997Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.233513Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-06-08T17:36:22.238246Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.239303Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.242514Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-06-08T17:36:22.303528Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.304689Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.308471Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T17:36:22.369377Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.370625Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.374096Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T17:36:22.435446Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.436736Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.440438Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T17:36:22.551588Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.552834Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.556793Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T17:36:22.617757Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.619051Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.622764Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T17:36:22.685078Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.686419Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.690229Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-06-08T17:36:22.751328Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.752531Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.756129Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-06-08T17:36:22.817026Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.818232Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.821734Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T17:36:22.884274Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.886199Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.886741Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.889672Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.889937Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-06-08T17:36:22.892897Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T17:36:22.954006Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.954131Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.955567Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.956198Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.960044Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-06-08T17:36:22.961282Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-06-08T17:36:23.020768Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.020876Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.022175Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.022650Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.027409Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-06-08T17:36:23.028885Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-06-08T17:36:23.137802Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.139457Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.143626Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-06-08T17:36:23.254568Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.255687Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.259205Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-06-08T17:36:23.321834Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.322942Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.326791Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T17:36:23.437752Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.437856Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.438910Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.439736Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.442942Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-06-08T17:36:23.445411Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T17:36:23.506880Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.506982Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.508005Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.508359Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.512544Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T17:36:23.513070Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-06-08T17:36:23.573456Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.574552Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.579175Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T17:36:23.591359Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.592385Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.595806Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T17:36:23.624814Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.625877Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.629492Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-06-08T17:36:23.633861Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.634828Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.638069Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T17:36:23.667278Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.668310Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.671860Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-06-08T17:36:23.676600Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.677489Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.680784Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T17:36:23.742026Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.743073Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.746823Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-06-08T17:36:24.108712Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.109833Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.114003Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T17:36:24.174565Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.175618Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.179342Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-06-08T17:36:24.191826Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.192786Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.196125Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-06-08T17:36:24.257310Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.258363Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.262174Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T17:36:24.323428Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.324445Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.328207Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-06-08T17:36:24.389523Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.390535Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.394188Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T17:36:24.423543Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.424554Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.428100Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-06-08T17:36:24.432795Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.433643Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.437489Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-06-08T17:36:24.466126Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.467112Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.470108Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T17:36:24.472538Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.473304Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.478258Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T17:36:24.537925Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.538015Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.538786Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.539228Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.543263Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-06-08T17:36:24.544369Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-06-08T17:36:24.704758Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.705697Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.709355Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T17:36:24.770264Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.771238Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.774957Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T17:36:24.775513Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.776322Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.779802Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-06-08T17:36:24.891100Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.892043Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.895488Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T17:36:25.006806Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.007759Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.011132Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T17:36:25.072408Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.073375Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.077075Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-08T17:36:25.188425Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.189315Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.192933Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-06-08T17:36:25.254204Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.255122Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.258357Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-06-08T17:36:25.420099Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.420999Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.424260Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-06-08T17:36:25.485497Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.486435Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.490176Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T17:36:25.551050Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.551990Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.556208Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T17:36:25.585075Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.585923Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.589510Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-06-08T17:36:25.618420Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.619289Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.623029Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-08T17:36:25.683989Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.684889Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.688489Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-06-08T17:36:25.950284Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.951153Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.954541Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-06-08T17:36:26.017051Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.017923Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.021360Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T17:36:26.082830Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.083718Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.087516Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-06-08T17:36:26.249048Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.249879Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.253066Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T17:36:26.314552Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.315396Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.318693Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T17:36:26.430090Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.430875Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.434312Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-06-08T17:36:26.496700Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.497495Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.501205Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-06-08T17:36:26.561964Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.562040Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.562650Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.562936Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.566695Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T17:36:26.567645Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-06-08T17:36:26.628961Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.629070Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.629775Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.630492Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.633891Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T17:36:26.635103Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T17:36:26.695042Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.695143Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.695179Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.695861Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.697903Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.698599Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.700421Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-06-08T17:36:26.702347Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-06-08T17:36:26.703544Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-06-08T17:36:26.708923Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.709584Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.712573Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-06-08T17:36:26.741729Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.741798Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.741827Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.742363Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.743055Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.745468Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.746211Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T17:36:26.746867Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.749407Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T17:36:26.750547Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.752307Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-06-08T17:36:26.753244Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-06-08T17:36:26.815003Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.815102Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.815131Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.815738Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.816195Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.819628Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T17:36:26.820831Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T17:36:26.882601Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.882704Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.097239Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.097876Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.101290Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-06-08T17:36:27.162292Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.376952Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.377578Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.380593Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-06-08T17:36:27.442006Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.506542Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.507107Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.510408Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T17:36:27.571677Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.786287Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.786887Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.789979Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T17:36:27.852369Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.966709Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.967294Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.970086Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-06-08T17:36:28.033104Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.033496Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.033668Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.034562Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.034944Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.037880Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.040508Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.043080Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:28.102679Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.102768Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.102792Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.103022Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.103749Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.106823Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.107940Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.137002Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.137073Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.137275Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.140004Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:28.169533Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.138203Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:38.363722Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:38.363722Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] 
[2026-06-08T17:36:38.363722Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:38.363796Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] 
[2026-06-08T17:36:38.363804Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:38.363812Z] [nf-db507c0407c4fe7bc74b998221be1097-229a1-gm9td] [676_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec