.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/4aa1654a9622d147daa1eedeffa17c/.command.err
Size: 85.8 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)
Attempt
Content

[2026-06-08T17:36:21.826276Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:21.827072Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:21.827086Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:21.827094Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:21.827101Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXC6YbNM'
[2026-06-08T17:36:21.827107Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:21.827114Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:21.827120Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:21.827126Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:21.827146Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:21.827153Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:21.827163Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:21.827169Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:21.827179Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:21.827984Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:21.828099Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:21.834783Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:21.835515Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:21.835702Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:21.835922Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:21.836176Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.836626Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.836716Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.836795Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.836916Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.836984Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.837103Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.837187Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.837334Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.837723Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.838162Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.838286Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.838657Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.839357Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.839799Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.840098Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.841835Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.842502Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:21.842696Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.842801Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.843013Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.843085Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.843262Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.843461Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.843885Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.844234Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.845012Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.845161Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.845315Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.845389Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.845506Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.845575Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.845762Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.845946Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.846450Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.846520Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.846635Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.846706Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.846821Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.846893Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.847010Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.847073Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.847192Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.847258Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.847365Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.847430Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.847554Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.848017Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.848496Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.848567Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.848673Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.848743Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.848854Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.848916Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.849024Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.849086Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.849216Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.849286Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.849396Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.849661Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.850216Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.850284Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.850403Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.850469Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.850586Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.850658Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.850774Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.850891Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.851005Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.851073Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.851220Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.851485Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.852050Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.852117Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.853773Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.854362Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.854496Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.854567Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.854680Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.854749Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.854862Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.854925Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.855041Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.855107Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.855214Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.855287Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.855558Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.856169Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.856290Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.856356Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.856472Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.856537Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.856646Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.856711Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.856830Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.856892Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.874244Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.874615Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.874833Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.875015Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.876010Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.876243Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.876523Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.876640Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.876725Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.877253Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.877541Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.877995Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.878471Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.879337Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:21.879537Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.880787Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.884097Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T17:36:21.884452Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.885587Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.887017Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.889705Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T17:36:21.893955Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T17:36:21.896874Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T17:36:21.901366Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T17:36:21.902705Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T17:36:21.907094Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T17:36:21.907586Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T17:36:22.773667Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.774740Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.778406Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T17:36:22.939658Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.940664Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.943989Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T17:36:23.205882Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.205966Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.206928Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.207270Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.211792Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T17:36:23.213493Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T17:36:23.240688Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.241742Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.244851Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T17:36:23.607135Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.607232Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.608239Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.608770Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.613610Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T17:36:23.823587Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.824646Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.828308Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T17:36:24.089869Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.090925Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.094488Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T17:36:24.255714Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.256738Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.259838Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T17:36:24.320952Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.321047Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.322008Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.322325Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.325801Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T17:36:24.327303Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T17:36:24.387163Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.388105Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.391511Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T17:36:24.552859Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.553884Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.557098Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T17:36:24.618151Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.619005Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.622022Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T17:36:24.865557Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T17:36:24.883485Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.883578Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.884493Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.884892Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.888400Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T17:36:24.889290Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T17:36:24.949463Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.950373Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.953444Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T17:36:24.966487Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.967371Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.970483Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T17:36:24.999370Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.000246Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.004029Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T17:36:25.064711Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.065699Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.068786Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T17:36:25.097947Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.098842Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.102550Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T17:36:25.106791Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.107544Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.110572Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T17:36:25.139784Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.140661Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.143825Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T17:36:25.148674Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.149518Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.153010Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T17:36:25.815643Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.815733Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.815772Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.816653Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.817095Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.817509Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.822132Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T17:36:25.824067Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T17:36:25.825361Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T17:36:25.883045Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.883130Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.883172Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.884058Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.884546Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.884788Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.889442Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T17:36:25.891309Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T17:36:25.892913Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T17:36:25.950212Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.950316Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.951166Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.951596Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.955258Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T17:36:25.956266Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T17:36:26.016266Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.017206Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.021226Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T17:36:26.282561Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.283461Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.286918Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T17:36:26.348116Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.348208Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.349017Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.349533Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.353454Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T17:36:26.355000Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T17:36:26.414747Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.415605Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.419739Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T17:36:26.480076Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.480942Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.484279Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T17:36:26.545168Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.546001Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.549040Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T17:36:26.610251Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.611108Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.615008Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T17:36:26.627507Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.628231Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.631989Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T17:36:26.636047Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.636770Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.639824Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T17:36:26.652772Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.653511Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.656646Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T17:36:26.685722Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.686462Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.688610Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.689460Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.690203Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T17:36:26.692676Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T17:36:26.721683Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.722526Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.725857Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T17:36:26.786797Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.787583Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.791232Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T17:36:26.851976Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.852061Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.852759Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.853220Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.856436Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T17:36:26.857689Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T17:36:26.917591Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.918366Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.921854Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T17:36:27.033032Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.033862Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.037159Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T17:36:27.098117Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.098202Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.098231Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.098984Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.099347Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.099669Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.103801Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T17:36:27.105680Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T17:36:27.106815Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T17:36:27.164707Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.164806Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.165495Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.165885Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.169206Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T17:36:27.170135Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T17:36:27.198666Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.199351Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.202213Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T17:36:27.203136Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.203680Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.206629Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T17:36:27.235815Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.236477Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.239665Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T17:36:27.240138Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.240665Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.243824Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T17:36:27.355030Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.355701Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.359496Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T17:36:27.419909Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.420620Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424141Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T17:36:27.485204Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.485907Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.489346Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T17:36:27.502149Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.502845Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.506783Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T17:36:28.218809Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.219454Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.222392Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T17:36:28.283741Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.283813Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.284399Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.285201Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.288413Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T17:36:28.289356Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T17:36:28.349640Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.349696Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.350233Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.350568Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.353685Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T17:36:28.354922Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T17:36:28.384430Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.385011Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.385588Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.386735Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.389627Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T17:36:28.390678Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T17:36:28.451967Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.452603Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.455710Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T17:36:28.517113Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.517211Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.517705Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.518166Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.521154Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T17:36:28.522400Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T17:36:28.582421Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.582558Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.583044Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.583564Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.586425Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T17:36:28.587416Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T17:36:28.616645Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.616700Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.617162Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.617785Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.620772Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T17:36:28.621776Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T17:36:28.625603Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.626088Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.629098Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T17:36:28.658045Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.658109Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.658551Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.661376Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T17:36:28.722628Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.836774Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.837251Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.840151Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T17:36:28.901250Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.901318Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.901749Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.904637Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T17:36:28.934042Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.148547Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.148945Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.151592Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T17:36:29.180892Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.244942Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.245360Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.247965Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T17:36:29.277413Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.642185Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.642677Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.645861Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T17:36:29.674586Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.738504Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.738872Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.741618Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T17:36:29.770854Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.771127Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.771248Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.771861Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.772496Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.774663Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:29.777026Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:29.777596Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:29.806878Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.806938Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.806961Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.807143Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.807632Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.810429Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:29.811355Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:29.839823Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.839930Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.840097Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.842562Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:29.872011Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.441883Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:40.715948Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:40.715948Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] 
[2026-06-08T17:36:40.715948Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:40.715995Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] 
[2026-06-08T17:36:40.716002Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:40.716009Z] [nf-774aa1654a9622d147daa1eedeffa17c-aab24-rtkt5] [591_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec