cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:72000001, elapsed 0.1s, est remaining 1.9s, peak mem 813MB, user 0.2s, sys 3.9s, output queue size 116
progress 10% @chr2:180000001, elapsed 0.2s, est remaining 1.6s, peak mem 813MB, user 0.3s, sys 10.8s, output queue size 262
progress 15% @chr4:107000001, elapsed 0.3s, est remaining 1.5s, peak mem 813MB, user 0.5s, sys 23.3s, output queue size 423
progress 20% @chr5:52000001, elapsed 0.3s, est remaining 1.3s, peak mem 813MB, user 0.7s, sys 38.4s, output queue size 585
progress 25% @chr6:33000001, elapsed 0.4s, est remaining 1.2s, peak mem 813MB, user 1.0s, sys 54.3s, output queue size 746
progress 30% @chr1:189000001, elapsed 0.4s, est remaining 1.0s, peak mem 813MB, user 1.3s, sys 67.9s, output queue size 908
progress 35% @chr8:15000001, elapsed 0.5s, est remaining 0.9s, peak mem 813MB, user 1.7s, sys 80.7s, output queue size 1068
progress 40% @chr9:2000001, elapsed 0.5s, est remaining 0.8s, peak mem 813MB, user 2.1s, sys 97.4s, output queue size 1231
progress 45% @chr9:90000001, elapsed 0.6s, est remaining 0.7s, peak mem 813MB, user 2.5s, sys 118.5s, output queue size 1392
progress 50% @chr10:97000001, elapsed 0.7s, est remaining 0.7s, peak mem 813MB, user 2.7s, sys 133.2s, output queue size 1554
progress 55% @chr12:70000001, elapsed 0.7s, est remaining 0.6s, peak mem 813MB, user 3.1s, sys 145.6s, output queue size 1442
progress 60% @chr13:60000001, elapsed 0.8s, est remaining 0.5s, peak mem 813MB, user 3.7s, sys 160.5s, output queue size 1604
progress 65% @chr14:86000001, elapsed 0.8s, est remaining 0.4s, peak mem 813MB, user 4.2s, sys 176.0s, output queue size 1765
progress 70% @chr10:57000001, elapsed 0.9s, est remaining 0.4s, peak mem 813MB, user 4.8s, sys 193.8s, output queue size 1927
progress 75% @chr2:86000001, elapsed 0.9s, est remaining 0.3s, peak mem 813MB, user 5.4s, sys 213.3s, output queue size 2088
progress 80% @chr22:15000001, elapsed 1.0s, est remaining 0.2s, peak mem 813MB, user 5.9s, sys 238.9s, output queue size 2250
progress 85% @chrX:61000001, elapsed 1.0s, est remaining 0.2s, peak mem 813MB, user 6.4s, sys 255.3s, output queue size 2415
progress 90% @chr21:9000001, elapsed 1.1s, est remaining 0.1s, peak mem 813MB, user 7.0s, sys 274.4s, output queue size 2725
progress 95% @chrX:40000001, elapsed 1.1s, est remaining 0.1s, peak mem 813MB, user 7.5s, sys 302.4s, output queue size 3051
progress 100% @HLA-C*15:05:02:1, elapsed 1.3s, est remaining 0.0s, peak mem 813MB, user 7.9s, sys 356.8s, output queue size 6159
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 51111
output file size: 43431
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.002 user 0.000 sys 0.011 real
"predict_filter": 171 calls 0.048 user 0.018 sys 0.099 real
advance: 3219322 calls 0.422 user 110.935 sys 114.455 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.005 sys 1.351 real
fetch_ref: 460 calls 0.015 user 0.095 sys 0.376 real
idle: 20633 calls 0.589 user 1.045 sys 698.559 real
init: 1 calls 0.355 user 0.138 sys 0.655 real
overall: 852692992 mem 9.797 user 374.098 sys 3.269 real