Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/67eec4051e396a9e56b0be0fa0405f/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/a95586b1b08a697566ea24e2f6d852/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/a95586b1b08a697566ea24e2f6d852/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/67eec4051e396a9e56b0be0fa0405f/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T17:36:24.416611Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:24.417482Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:24.417496Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:24.417502Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:24.417510Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXI21Bmz'
[2026-06-08T17:36:24.417515Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:24.417521Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:24.417527Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:24.417531Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-08T17:36:24.417536Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:24.417542Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:24.417547Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:24.417554Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:24.417559Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:24.417941Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:24.418055Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:24.425005Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:24.425471Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:24.425737Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:24.425941Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:24.426198Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.427176Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.427292Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.427459Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.427844Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.427968Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.428497Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.428726Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.428874Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.430288Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.430818Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.431104Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.431207Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:24.431337Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.431488Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.431611Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.432014Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.432194Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.432340Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.432416Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.432645Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.432741Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.432882Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.432969Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.433111Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.433194Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.433518Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.433852Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.434129Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.434453Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.434595Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.434689Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.434828Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.434903Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.435039Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.435117Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.435251Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.435331Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.435467Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.435729Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.436156Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.436264Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.436406Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.436488Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.436622Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.436714Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.436856Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.436998Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.437146Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.437272Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.437878Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.437958Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.438111Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.438190Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.438326Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.438403Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.455271Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.455547Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.455638Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.455831Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.455923Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.456027Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.456115Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.456245Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.456327Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:24.456385Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:24.457357Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.458119Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.458561Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.458882Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.459446Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.460011Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.460472Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.462484Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.463239Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.466679Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:24.469622Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-08T17:36:24.472331Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-08T17:36:24.475588Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-08T17:36:24.477953Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-08T17:36:24.479455Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-08T17:36:24.481172Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-08T17:36:24.578876Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.579547Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.583002Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-08T17:36:25.544995Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.546110Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.549202Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-08T17:36:25.610210Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.610290Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.611007Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.611295Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.614343Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-08T17:36:25.615433Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:25.619252Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.619843Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.622733Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T17:36:25.683495Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.683540Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.684132Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.684459Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.688341Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-08T17:36:25.898766Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.899496Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.902839Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-08T17:36:26.214146Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.214868Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.217821Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:26.278896Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.279648Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.282381Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-08T17:36:26.839859Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-08T17:36:26.844215Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.844960Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.847493Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-08T17:36:26.876631Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.877262Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.879764Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-08T17:36:27.039135Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-08T17:36:27.041127Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.041188Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.041234Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.041947Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.042307Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.042603Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.046078Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-08T17:36:27.047668Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-08T17:36:27.048625Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-08T17:36:27.076169Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.076257Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.076889Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.077211Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.080130Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-08T17:36:27.080964Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-08T17:36:27.109031Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.109097Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.109677Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.109971Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.113280Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T17:36:27.114233Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-08T17:36:27.174231Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.174850Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.177783Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-08T17:36:27.190767Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.191352Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.193924Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-08T17:36:27.223210Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.223830Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.226361Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T17:36:27.287694Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.288306Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.291143Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:27.352374Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.353095Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.355666Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:27.417018Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.417681Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.420142Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-08T17:36:27.449342Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.449848Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.452618Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-08T17:36:27.481654Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.482233Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.485142Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-08T17:36:27.546106Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.546741Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.549209Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:27.911009Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.911637Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.914181Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-08T17:36:27.943255Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.943744Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.946543Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-08T17:36:28.007685Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.008197Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.010731Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:28.023886Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.024388Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.026752Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-08T17:36:28.056060Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.056560Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.059032Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-08T17:36:28.064101Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.064536Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.066996Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-08T17:36:28.478796Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.478883Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.479395Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.479696Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.482722Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-08T17:36:28.514739Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:28.544314Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.544378Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.544832Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.545084Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.547955Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:28.549186Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-08T17:36:28.576986Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.577036Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.577066Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.577486Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.577699Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.578100Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.581747Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-08T17:36:28.583253Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-08T17:36:28.584310Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-08T17:36:28.611358Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.611809Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.614235Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:28.615399Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.615909Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.647510Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.811350Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.811404Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.811849Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.812140Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.814950Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-08T17:36:28.815674Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-08T17:36:28.876026Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.876088Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.989885Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.990270Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.992574Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-08T17:36:29.022015Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.036948Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.037365Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.039615Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-08T17:36:30.069082Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.284278Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.284676Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.286919Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-08T17:36:31.316259Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.316475Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.316580Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.316780Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.317141Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.320979Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:31.322343Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:31.323463Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:31.349237Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.349288Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.349313Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.349520Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.349729Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.352520Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:31.353254Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:31.381674Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.381736Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.381935Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.384090Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:31.413509Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.031411Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:43.305076Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:43.305076Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] 
[2026-06-08T17:36:43.305076Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:43.305118Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] 
[2026-06-08T17:36:43.305127Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:43.305135Z] [nf-3967eec4051e396a9e56b0be0fa0405f-5816e-mnblr] [761_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec