File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/8875781b95a0cfd0a4fd2dc9b8085d/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXZAziF9/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXZAziF9/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXZAziF9/chr19_15162349-15162662.bed.gz.tbi
[2026-06-08T17:36:23.288462Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:23.295430Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:23.295469Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:23.295476Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:23.295481Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXZAziF9'
[2026-06-08T17:36:23.295486Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:23.295492Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:23.295496Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:23.295500Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:23.295504Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:23.295508Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:23.295511Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:23.295515Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:23.295520Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:23.296499Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:23.296595Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:23.302679Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:23.303449Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:23.303707Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:23.303958Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:23.304243Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.304636Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.304729Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.304805Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.304926Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.304995Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.305117Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.305181Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.305299Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.305374Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.305969Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.306098Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.306503Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.307483Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.309770Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.310747Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.311057Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:23.311187Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.311687Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.311972Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.312218Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.312299Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.312426Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.312551Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.312673Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.312739Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.312865Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.312934Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.313345Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.313754Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.313936Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.314017Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.314148Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.314214Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.314362Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.314435Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.314555Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.314693Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.315090Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.315489Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.315637Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.315702Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.315839Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.315920Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.316767Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.317278Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.317430Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.317566Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.317692Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.317762Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.317874Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.317939Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.318055Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.318120Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.318233Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.318472Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.319046Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.319117Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.319229Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.319295Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.319409Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.319472Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.319588Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.319656Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.319779Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.319865Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.336109Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.336759Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.336838Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.337025Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.337096Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.337185Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.337251Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.337365Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.338676Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:23.338861Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:23.370962Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.371724Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.372355Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.372800Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.373396Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.374327Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.375007Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.376367Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.377191Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.386089Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T17:36:23.392415Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T17:36:23.396776Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T17:36:23.401089Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T17:36:23.496032Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.497004Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.500992Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T17:36:24.230525Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:24.797388Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T17:36:24.815153Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.815254Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.816281Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.816809Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.820851Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:24.821812Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T17:36:25.533331Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.534436Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.538935Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T17:36:25.878467Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:25.900127Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.900966Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.904607Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T17:36:25.965762Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.965856Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.966603Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.967022Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.971163Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T17:36:26.003445Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T17:36:26.033164Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.034039Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.037311Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T17:36:26.091651Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T17:36:26.098609Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.098681Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.098705Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.099392Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.099854Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.100205Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.106082Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T17:36:26.107864Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T17:36:26.108828Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T17:36:26.166498Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.166601Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.167351Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.167674Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.171435Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T17:36:26.172664Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:26.201842Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.202697Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.205613Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T17:36:26.266869Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.266943Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.266965Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.267645Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.268007Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.268565Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.271767Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:26.276735Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T17:36:26.278604Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T17:36:26.335478Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.336293Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.339672Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:26.551190Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.552156Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.556054Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T17:36:27.219403Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.220200Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.224051Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T17:36:27.335519Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.336290Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.339966Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T17:36:27.501565Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.502526Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.505754Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T17:36:27.567017Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.567726Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.570074Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.570820Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.571228Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T17:36:27.573949Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T17:36:27.586874Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.587465Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.591190Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T17:36:27.603908Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.604587Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.608287Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T17:36:27.637068Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.637739Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.640642Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T17:36:27.702175Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.702856Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.705685Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T17:36:27.767041Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.767709Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.770790Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:27.932467Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.933145Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.936467Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T17:36:28.098177Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.098862Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.101894Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T17:36:28.163243Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.163936Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.166843Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T17:36:28.228767Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.229438Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.232840Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T17:36:28.293562Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.294188Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.297851Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T17:36:28.509096Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.509775Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.513833Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T17:36:28.574505Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.574624Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.575240Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.575819Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.579693Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T17:36:28.580957Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T17:36:28.640678Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.641339Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.644839Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T17:36:28.705985Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.706584Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.710100Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T17:36:28.710569Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.711019Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.713758Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T17:36:28.775039Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.775127Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.775676Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.776038Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.779427Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T17:36:28.780723Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T17:36:28.840861Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.841468Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.844826Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T17:36:28.905981Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.906094Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.906629Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.907065Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.911213Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T17:36:28.912277Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T17:36:28.972159Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.972754Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.976605Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T17:36:29.037446Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.037558Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.038092Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.038459Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.041648Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T17:36:29.042825Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T17:36:29.102730Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.102811Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.103301Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.103648Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.106777Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T17:36:29.107627Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T17:36:29.169104Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.169213Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.169689Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.172971Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T17:36:29.234030Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.749984Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.750559Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.753568Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T17:36:29.814964Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.929371Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.929836Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.933113Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T17:36:29.962370Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.076906Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.077393Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.080385Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T17:36:30.142950Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.175065Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.175532Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.178259Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T17:36:30.239710Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.239817Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.240262Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.243105Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T17:36:30.304516Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.418874Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.419327Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.422537Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T17:36:30.483608Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.483889Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.484036Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.485040Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.486798Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.487647Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:30.490076Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:30.491096Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:30.519223Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.519292Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.519316Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.519524Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.519925Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.523334Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:30.524282Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:30.552893Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.554393Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.554569Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.557340Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:30.586821Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.909194Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:42.184407Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:42.184407Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] 
[2026-06-08T17:36:42.184407Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:42.184479Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] 
[2026-06-08T17:36:42.184487Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:42.184494Z] [nf-748875781b95a0cfd0a4fd2dc9b8085d-67d54-dkjnr] [586_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec