cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.8s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 3125
progress 10% @chr2:19966724, elapsed 0.1s, est remaining 0.7s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 2516
progress 15% @chr2:189003982, elapsed 0.1s, est remaining 0.6s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 12908
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.6s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 23393
progress 25% @chr4:88437711, elapsed 0.2s, est remaining 0.6s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 33646
progress 30% @chr5:146589947, elapsed 0.2s, est remaining 0.5s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 43686
progress 35% @chr6:127119291, elapsed 0.3s, est remaining 0.5s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 9394
progress 40% @chr7:128806237, elapsed 0.3s, est remaining 0.4s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 18866
progress 45% @chr9:990041, elapsed 0.3s, est remaining 0.4s, peak mem 261MB, user 0.0s, sys 0.0s, output queue size 28237
progress 50% @chr10:32009016, elapsed 0.4s, est remaining 0.4s, peak mem 291MB, user 0.0s, sys 0.0s, output queue size 38190
progress 55% @chr11:48216810, elapsed 0.4s, est remaining 0.3s, peak mem 300MB, user 0.0s, sys 0.0s, output queue size 48640
progress 60% @chr12:21910826, elapsed 0.4s, est remaining 0.3s, peak mem 300MB, user 0.0s, sys 0.0s, output queue size 58187
progress 65% @chr13:49191209, elapsed 0.5s, est remaining 0.3s, peak mem 300MB, user 0.0s, sys 0.0s, output queue size 69240
progress 70% @chr15:42684116, elapsed 0.5s, est remaining 0.2s, peak mem 300MB, user 0.0s, sys 0.0s, output queue size 79318
progress 75% @chr16:30888860, elapsed 0.5s, est remaining 0.2s, peak mem 300MB, user 0.0s, sys 0.0s, output queue size 88838
progress 80% @chr17:42543028, elapsed 0.6s, est remaining 0.1s, peak mem 300MB, user 0.0s, sys 0.0s, output queue size 99531
progress 85% @chr19:5648989, elapsed 0.6s, est remaining 0.1s, peak mem 327MB, user 0.0s, sys 0.0s, output queue size 109940
progress 90% @chr19:55663606, elapsed 0.7s, est remaining 0.1s, peak mem 327MB, user 0.0s, sys 0.0s, output queue size 119437
progress 95% @chr22:37086283, elapsed 1.0s, est remaining 0.1s, peak mem 2505MB, user 5.6s, sys 1.9s, output queue size 3254
progress 100% @chrY:57075987, elapsed 1.0s, est remaining 0.0s, peak mem 2505MB, user 5.8s, sys 1.9s, output queue size 6116
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290606
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.668 user 0.086 sys 2.072 real
done: 1 calls 0.404 user 0.206 sys 0.617 real
execute: 1 calls 0.005 user 0.011 sys 1.050 real
fetch_reads: 208647 calls 0.037 user 0.000 sys 0.152 real
fetch_ref: 2072 calls 0.034 user 0.007 sys 0.027 real
fetch_vcf: 2072 calls 0.650 user 0.040 sys 0.927 real
idle: 90 calls 0.002 user 0.003 sys 31.803 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.153 user 1.731 sys 6.430 real
overall: 2626752512 mem 9.382 user 19.681 sys 2.460 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory