Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/1f8d437761990ed890e1456d2296f8/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/70c38b8a4d1e284e85dcc2e5173ffa/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/70c38b8a4d1e284e85dcc2e5173ffa/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-xtzjc1fk because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:40:38,819 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:40:39,722 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:40:39,902 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:40:40,928 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:40:41,121 - cnv_pipe.batch.run_model - INFO - Processing cluster 882 with 195 probes
2026-06-08 17:40:41,548 - cnv_pipe.batch.run_model.cluster882 - INFO - Child process started for cluster 882 with 195 probes
2026-06-08 17:41:42,872 - cnv_pipe.batch.run_model.cluster882 - INFO - Child process finished cluster 882. Wrote cluster_882_samples.csv and cluster_882_params.csv
2026-06-08 17:41:42,873 - cnv_pipe.batch.run_model - INFO - Cluster 882 finished in 61.75 seconds. Status: SUCCESS