File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/2d4329d2c5b6e99152d222ec93c048/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-7x19lpmo because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:38:31,577 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:38:32,419 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:38:32,587 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:38:33,544 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:38:33,725 - cnv_pipe.batch.run_model - INFO - Processing cluster 108 with 192 probes
2026-06-08 17:38:34,112 - cnv_pipe.batch.run_model.cluster108 - INFO - Child process started for cluster 108 with 192 probes
2026-06-08 17:39:31,438 - cnv_pipe.batch.run_model.cluster108 - INFO - Child process finished cluster 108. Wrote cluster_108_samples.csv and cluster_108_params.csv
2026-06-08 17:39:31,440 - cnv_pipe.batch.run_model - INFO - Cluster 108 finished in 57.71 seconds. Status: SUCCESS