Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/958bc0f74183ead64c8d91ee5c9081/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/981bbb6fecd40b817ddc7930c036d0/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/981bbb6fecd40b817ddc7930c036d0/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/958bc0f74183ead64c8d91ee5c9081/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T17:36:20.703164Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:20.705094Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:20.705104Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:20.705109Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:20.705113Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX9GVAeH'
[2026-06-08T17:36:20.705117Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:20.705138Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:20.705143Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:20.705147Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:20.705151Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:20.705154Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:20.705158Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:20.705162Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:20.705166Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:20.705640Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:20.705755Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:20.711579Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:20.712329Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:20.712611Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:20.712940Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:20.713277Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.713977Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.714070Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.714145Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.714311Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.714574Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.714965Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.715209Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.715688Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.716614Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.718628Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.718897Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:20.719137Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.719224Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.719351Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.719448Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.719923Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.720064Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.720367Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.720614Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.720812Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.720878Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.720993Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.721060Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.721191Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.721276Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.721445Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.721514Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.721754Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.722154Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.722273Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.722353Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.722497Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.722571Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.722687Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.722751Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.722873Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.722946Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.723054Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.723121Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.723903Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.724201Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.724334Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.724405Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.724519Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.724586Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.724702Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.724849Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.724971Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.725045Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.725178Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.725303Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.725556Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.725996Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726116Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726180Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726294Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726360Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726469Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726532Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726644Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726705Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726817Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726880Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.726987Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.727240Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.727799Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.727865Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.727984Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.728053Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.728167Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.728229Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.728335Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.728400Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.745130Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.745609Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.745695Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.745867Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.745939Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.746041Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.746111Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.746225Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.746295Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.746341Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:20.749518Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.750199Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.750607Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.751203Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.751879Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.752964Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.754153Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.754962Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.755958Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.760544Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T17:36:20.763221Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T17:36:20.766256Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T17:36:20.770959Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T17:36:20.773746Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:20.774433Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:20.778063Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T17:36:21.423914Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.424838Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.427802Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T17:36:21.790373Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.791184Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.794692Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T17:36:21.855820Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.856694Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.860118Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:21.971701Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.972736Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.976062Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T17:36:22.037504Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.038398Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.041754Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:22.403780Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.404689Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.407658Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T17:36:22.619737Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.620626Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.623616Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T17:36:22.625419Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T17:36:22.628630Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.628690Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.629414Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.629879Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.633009Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T17:36:22.634194Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T17:36:22.662114Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.662969Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.666186Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T17:36:22.667206Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.667258Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.667902Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.668618Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.672065Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T17:36:22.672937Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T17:36:22.783421Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.784275Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.787769Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T17:36:23.299888Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.300677Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.303782Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T17:36:23.364926Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.365812Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.369199Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T17:36:23.430427Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.431170Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.434923Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:23.495663Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.496823Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.497396Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.500247Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.502161Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T17:36:23.503581Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:23.564619Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.565442Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.568570Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:23.630002Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.630695Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.634480Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T17:36:23.946239Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.947052Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.950450Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T17:36:24.011635Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.011736Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.012536Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.013015Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.016535Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:24.017896Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:24.045262Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.046317Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.046628Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.048732Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.050311Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T17:36:24.051322Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T17:36:24.064894Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.065584Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.068420Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T17:36:24.073599Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.074165Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.076915Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:24.081882Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.082532Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.085785Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T17:36:24.114715Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.115377Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.118512Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T17:36:24.280172Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.280902Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.284026Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T17:36:24.395656Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.396396Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.399786Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T17:36:24.460771Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.461544Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.464826Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:24.526049Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.526716Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.530153Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:24.942202Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.943028Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.946517Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T17:36:25.007721Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.008406Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.011832Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T17:36:25.072844Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.073503Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.077466Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T17:36:25.238603Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.239320Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.242945Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:25.354453Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.354536Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.354573Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.354596Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.355229Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.355673Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.355924Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.356274Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.360474Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T17:36:25.361204Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:25.364068Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T17:36:25.364407Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:25.423892Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.423960Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.423994Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.424018Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.424567Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.425298Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.427016Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.427470Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.427955Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:25.430586Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:25.434266Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:25.460767Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.461494Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.463321Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.463990Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.464546Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T17:36:25.466766Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T17:36:25.492789Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T17:36:25.497520Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.497581Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.497612Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.498106Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.498447Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.498674Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.502831Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:25.504093Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T17:36:25.505355Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:25.564963Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.565051Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.565084Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.565632Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.566126Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.566697Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.569235Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:25.572510Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T17:36:25.630329Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T17:36:25.632247Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.632315Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.632352Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.632935Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.633248Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.633649Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.637290Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T17:36:25.638981Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:25.640395Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T17:36:25.698598Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.698685Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.699182Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.699575Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.702683Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:25.735270Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:25.763909Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.764009Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.764463Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.767459Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T17:36:25.828607Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.193431Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.193925Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.197324Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T17:36:26.258541Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.322755Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.323245Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.326740Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T17:36:26.387931Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.388018Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.388431Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.391509Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:26.452844Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.970815Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.971292Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.974684Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T17:36:28.035772Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.043459Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.043862Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.046890Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T17:36:28.108084Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.823933Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.824388Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.827586Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T17:36:28.888892Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.889173Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.889302Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.889831Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.890255Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.895525Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.895929Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.896645Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:28.923038Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.923265Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.923558Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.923878Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.924235Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.927237Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.927455Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.956819Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.958112Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.958272Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.960589Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:28.990023Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.309416Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:39.593350Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:39.593350Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] 
[2026-06-08T17:36:39.593350Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:39.593407Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] 
[2026-06-08T17:36:39.593420Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:39.593426Z] [nf-53958bc0f74183ead64c8d91ee5c9081-245e5-pjgws] [617_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec