File Info

Filename
negative_somatic_control_2.tnseq.orientation_data.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/57f43d136b053a2b0370a1dd083024/negative_somatic_control_2.tnseq.orientation_data.tsv
Size
8.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (negative_somatic_control_2)
Attempt

Content

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#<METADATA>SAMPLE=Sig_18_Blood
context rev_comp f1r2_a f1r2_c f1r2_g f1r2_t f2r1_a f2r1_c f2r1_g f2r1_t hom_ref germline_het somatic_het hom_var num_examples num_alt_examples
AAA TTT 0 5.97307e-06 6.06923e-06 3.0967e-06 0 2.61942e-06 5.74348e-05 3.48887e-06 0.999001 9.90934e-05 0.000543036 0.000278113 39910 764
AAC GTT 0 6.45893e-06 1.32126e-05 5.34025e-06 0 5.56064e-05 8.13684e-05 5.35171e-06 0.998745 0.00045073 0.000364873 0.000272177 18730 458
AAG CTT 0 4.24042e-06 5.86472e-05 3.84757e-06 0 6.19339e-06 2.02389e-05 4.70147e-06 0.998788 6.76833e-05 0.000646071 0.000400802 27469 748
AAT ATT 0 4.88818e-06 5.33302e-05 4.81815e-06 0 4.48577e-06 4.81912e-06 4.17209e-05 0.999102 0.00015112 0.000459616 0.000172843 23720 498
ACA TGT 0.00125356 0 3.86647e-06 6.70861e-05 0.00138636 0 3.7985e-06 8.72522e-05 0.996153 0.000201889 0.000540383 0.000303186 26715 1227
ACC GGT 0.000722141 0 5.15387e-06 1.36907e-05 0.000480716 0 4.9879e-06 0.000188378 0.997194 0.0008055 0.000332912 0.000253002 20156 792
ACG CGT 0.00102333 0 1.17577e-05 5.7979e-05 0.00217653 0 1.18376e-05 0.00011977 0.989908 0.00337064 0.00134986 0.00197072 8673 539
ACT AGT 0.00107743 0 6.18238e-05 5.99536e-06 0.000958081 0 5.37654e-05 1.88614e-05 0.996654 0.000487647 0.000229609 0.00045291 20076 773
AGA TCT 3.92803e-06 3.43566e-06 0 0.000272391 7.75547e-05 2.9076e-05 0 0.000331663 0.99811 0.00017179 0.000628771 0.000371491 29459 893
AGC GCT 1.21973e-05 4.22688e-06 0 0.00150956 1.88516e-05 4.10323e-06 0 0.00119415 0.996036 3.51215e-05 0.000875607 0.000309811 26478 1276
AGG CCT 6.96897e-05 3.34354e-06 0 0.000336181 2.12328e-05 3.32666e-06 0 0.000607928 0.99773 0.000189017 0.000675281 0.00036386 30483 1105
AGT ACT 1.88614e-05 5.37654e-05 0 0.000958081 5.99536e-06 6.18238e-05 0 0.00107743 0.996654 0.000487647 0.000229609 0.00045291 20076 773
ATA TAT 5.70852e-06 6.28638e-06 6.31271e-06 0 5.45651e-05 9.65639e-06 8.02149e-05 0 0.998467 0.000867745 0.000327541 0.000175007 17697 436
ATC GAT 5.93254e-06 0.000244595 6.31903e-06 0 5.94702e-06 0.000204821 8.64117e-06 0 0.998116 2.55607e-05 0.000724344 0.000658242 16861 428
ATG CAT 4.76765e-06 5.56065e-06 2.83312e-05 0 4.37812e-06 8.24793e-05 7.25517e-06 0 0.997253 0.00029569 0.00126451 0.00105387 22848 598
ATT AAT 4.17209e-05 4.81912e-06 4.48577e-06 0 4.81815e-06 5.33302e-05 4.88818e-06 0 0.999102 0.00015112 0.000459616 0.000172843 23720 498
CAA TTG 0 3.59061e-05 6.4463e-06 4.43466e-06 0 5.12247e-06 4.9591e-05 4.49445e-06 0.998825 0.000416349 0.000248832 0.000403422 22555 542
CAC GTG 0 4.20975e-06 1.10748e-05 3.88679e-06 0 4.26107e-05 4.89347e-06 3.89872e-06 0.997188 0.00102696 0.000742333 0.000972324 25732 718
CAG CTG 0 2.74198e-06 3.57909e-05 2.67375e-06 0 3.05006e-06 0.000128831 2.64313e-06 0.997648 0.000654109 0.000639885 0.000882472 38550 1252
CAT ATG 0 7.25517e-06 8.24793e-05 4.37812e-06 0 2.83312e-05 5.56065e-06 4.76765e-06 0.997253 0.00029569 0.00126451 0.00105387 22848 598
CCA TGG 0.000644967 0 3.27872e-06 8.56486e-06 0.000637372 0 3.28592e-06 4.92341e-06 0.998009 3.39584e-05 0.000488654 0.000165586 30795 1191
CCC GGG 0.000216598 0 1.36293e-05 0.00014407 0.000290138 0 3.38118e-06 6.10107e-06 0.997955 0.000167211 0.000741029 0.000463165 29950 891
CCG CGG 0.000861571 0 7.6428e-06 0.000376076 0.000786729 0 1.01024e-05 0.000104178 0.991104 0.00337788 0.00135152 0.00202015 13412 732
CCT AGG 0.000607928 0 3.32666e-06 2.12328e-05 0.000336181 0 3.34354e-06 6.96897e-05 0.99773 0.000189017 0.000675281 0.00036386 30483 1105
CGA TCG 2.4035e-05 1.58376e-05 0 0.000737011 0.000404951 1.43113e-05 0 0.000700353 0.993073 0.00266205 0.00125403 0.00111455 7204 343
CGC GCG 0.00124719 8.95613e-06 0 0.00227938 0.000633612 9.59791e-06 0 0.00180854 0.987817 0.0019844 0.00214268 0.00206819 11612 737
CGG CCG 0.000104178 1.01024e-05 0 0.000786729 0.000376076 7.6428e-06 0 0.000861571 0.991104 0.00337788 0.00135152 0.00202015 13412 732
CGT ACG 0.00011977 1.18376e-05 0 0.00217653 5.7979e-05 1.17577e-05 0 0.00102333 0.989908 0.00337064 0.00134986 0.00197072 8673 539
CTA TAG 8.05645e-06 3.86574e-05 8.58094e-06 0 7.93589e-06 6.85984e-05 8.35683e-06 0 0.99797 0.000356891 0.00128709 0.00024595 12603 353
CTC GAG 5.35508e-06 0.000229994 4.2906e-06 0 3.7126e-06 0.000302655 3.82586e-06 0 0.998514 0.000124954 0.000455588 0.000356059 27876 939
CTG CAG 2.64313e-06 0.000128831 3.05006e-06 0 2.67375e-06 3.57909e-05 2.74198e-06 0 0.997648 0.000654109 0.000639885 0.000882472 38550 1252
CTT AAG 4.70147e-06 2.02389e-05 6.19339e-06 0 3.84757e-06 5.86472e-05 4.24042e-06 0 0.998788 6.76833e-05 0.000646071 0.000400802 27469 748
GAA TTC 0 3.86645e-06 4.62045e-05 3.7325e-06 0 1.59628e-05 2.27207e-05 3.70446e-06 0.999436 2.07705e-05 0.000295879 0.000151274 27018 569
GAC GTC 0 6.63864e-06 2.94054e-05 5.68882e-06 0 5.31044e-05 4.84297e-05 1.1284e-05 0.99866 0.000100309 0.000738915 0.000346579 17599 461
GAG CTC 0 3.82586e-06 0.000302655 3.7126e-06 0 4.2906e-06 0.000229994 5.35508e-06 0.998514 0.000124954 0.000455588 0.000356059 27876 939
GAT ATC 0 8.64117e-06 0.000204821 5.94702e-06 0 6.31903e-06 0.000244595 5.93254e-06 0.998116 2.55607e-05 0.000724344 0.000658242 16861 428
GCA TGC 0.00128396 0 3.86614e-06 5.27231e-05 0.00187617 0 3.98391e-06 0.000240578 0.995651 6.64271e-05 0.000514476 0.000306826 26397 1312
GCC GGC 0.00102395 0 4.03009e-06 4.54162e-05 0.0014367 0 4.198e-06 4.17922e-05 0.996369 0.000289268 0.000383557 0.000402078 27605 1173
GCG CGC 0.00180854 0 9.59791e-06 0.000633612 0.00227938 0 8.95613e-06 0.00124719 0.987817 0.0019844 0.00214268 0.00206819 11612 737
GCT AGC 0.00119415 0 4.10323e-06 1.88516e-05 0.00150956 0 4.22688e-06 1.21973e-05 0.996036 3.51215e-05 0.000875607 0.000309811 26478 1276
GGA TCC 4.06778e-06 3.93826e-06 0 0.000270125 3.56978e-05 4.14971e-06 0 0.000101338 0.998589 0.000177681 0.000513123 0.000300941 26909 713
GGC GCC 4.17922e-05 4.198e-06 0 0.0014367 4.54162e-05 4.03009e-06 0 0.00102395 0.996369 0.000289268 0.000383557 0.000402078 27605 1173
GGG CCC 6.10107e-06 3.38118e-06 0 0.000290138 0.00014407 1.36293e-05 0 0.000216598 0.997955 0.000167211 0.000741029 0.000463165 29950 891
GGT ACC 0.000188378 4.9879e-06 0 0.000480716 1.36907e-05 5.15387e-06 0 0.000722141 0.997194 0.0008055 0.000332912 0.000253002 20156 792
GTA TAC 7.77709e-06 0.00012115 1.19707e-05 0 7.38205e-06 1.91643e-05 9.47919e-06 0 0.998661 5.92206e-05 0.000357314 0.000745519 13546 331
GTC GAC 1.1284e-05 4.84297e-05 5.31044e-05 0 5.68882e-06 2.94054e-05 6.63864e-06 0 0.99866 0.000100309 0.000738915 0.000346579 17599 461
GTG CAC 3.89872e-06 4.89347e-06 4.26107e-05 0 3.88679e-06 1.10748e-05 4.20975e-06 0 0.997188 0.00102696 0.000742333 0.000972324 25732 718
GTT AAC 5.35171e-06 8.13684e-05 5.56064e-05 0 5.34025e-06 1.32126e-05 6.45893e-06 0 0.998745 0.00045073 0.000364873 0.000272177 18730 458
TAA TTA 0 5.21791e-06 8.95291e-06 8.73591e-05 0 5.4889e-06 1.73988e-05 4.97373e-06 0.998576 9.70971e-05 0.000701572 0.000495444 20382 475
TAC GTA 0 9.47919e-06 1.91643e-05 7.38205e-06 0 1.19707e-05 0.00012115 7.77709e-06 0.998661 5.92206e-05 0.000357314 0.000745519 13546 331
TAG CTA 0 8.35683e-06 6.85984e-05 7.93589e-06 0 8.58094e-06 3.86574e-05 8.05645e-06 0.99797 0.000356891 0.00128709 0.00024595 12603 353
TAT ATA 0 8.02149e-05 9.65639e-06 5.45651e-05 0 6.31271e-06 6.28638e-06 5.70852e-06 0.998467 0.000867745 0.000327541 0.000175007 17697 436
TCA TGA 0.000881396 0 3.90445e-06 5.58947e-06 0.000496576 0 4.00002e-06 9.74286e-06 0.997689 6.79799e-05 0.000535001 0.0003068 25770 834
TCC GGA 0.000101338 0 4.14971e-06 3.56978e-05 0.000270125 0 3.93826e-06 4.06778e-06 0.998589 0.000177681 0.000513123 0.000300941 26909 713
TCG CGA 0.000700353 0 1.43113e-05 0.000404951 0.000737011 0 1.58376e-05 2.4035e-05 0.993073 0.00266205 0.00125403 0.00111455 7204 343
TCT AGA 0.000331663 0 2.9076e-05 7.75547e-05 0.000272391 0 3.43566e-06 3.92803e-06 0.99811 0.00017179 0.000628771 0.000371491 29459 893
TGA TCA 9.74286e-06 4.00002e-06 0 0.000496576 5.58947e-06 3.90445e-06 0 0.000881396 0.997689 6.79799e-05 0.000535001 0.0003068 25770 834
TGC GCA 0.000240578 3.98391e-06 0 0.00187617 5.27231e-05 3.86614e-06 0 0.00128396 0.995651 6.64271e-05 0.000514476 0.000306826 26397 1312
TGG CCA 4.92341e-06 3.28592e-06 0 0.000637372 8.56486e-06 3.27872e-06 0 0.000644967 0.998009 3.39584e-05 0.000488654 0.000165586 30795 1191
TGT ACA 8.72522e-05 3.7985e-06 0 0.00138636 6.70861e-05 3.86647e-06 0 0.00125356 0.996153 0.000201889 0.000540383 0.000303186 26715 1227
TTA TAA 4.97373e-06 1.73988e-05 5.4889e-06 0 8.73591e-05 8.95291e-06 5.21791e-06 0 0.998576 9.70971e-05 0.000701572 0.000495444 20382 475
TTC GAA 3.70446e-06 2.27207e-05 1.59628e-05 0 3.7325e-06 4.62045e-05 3.86645e-06 0 0.999436 2.07705e-05 0.000295879 0.000151274 27018 569
TTG CAA 4.49445e-06 4.9591e-05 5.12247e-06 0 4.43466e-06 6.4463e-06 3.59061e-05 0 0.998825 0.000416349 0.000248832 0.000403422 22555 542
TTT AAA 3.48887e-06 5.74348e-05 2.61942e-06 0 3.0967e-06 6.06923e-06 5.97307e-06 0 0.999001 9.90934e-05 0.000543036 0.000278113 39910 764
66 rows