Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/1f8d437761990ed890e1456d2296f8/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/28962503e4f4d404060d30056a1ea8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/28962503e4f4d404060d30056a1ea8/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-aidtijwb because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:41:14,042 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:41:15,438 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:41:15,723 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:41:17,473 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:41:17,592 - cnv_pipe.batch.run_model - INFO - Processing cluster 1068 with 199 probes
2026-06-08 17:41:18,385 - cnv_pipe.batch.run_model.cluster1068 - INFO - Child process started for cluster 1068 with 199 probes
2026-06-08 17:42:57,665 - cnv_pipe.batch.run_model.cluster1068 - INFO - Child process finished cluster 1068. Wrote cluster_1068_samples.csv and cluster_1068_params.csv
2026-06-08 17:42:57,667 - cnv_pipe.batch.run_model - INFO - Cluster 1068 finished in 100.07 seconds. Status: SUCCESS