Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/af0c565907198621c40991bd318828/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/8e32cc60bfb0698a5b0db1e7338f6a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/af0c565907198621c40991bd318828/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/8e32cc60bfb0698a5b0db1e7338f6a/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T17:36:18.705063Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:18.706573Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:18.706606Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:18.706612Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:18.706617Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXrKixId'
[2026-06-08T17:36:18.706621Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:18.706626Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:18.706630Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:18.706633Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T17:36:18.706637Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:18.706641Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:18.706644Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:18.706648Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:18.706652Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:18.707567Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:18.707627Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:18.713318Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:18.714063Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:18.714312Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:18.714494Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.714687Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:18.714948Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.715048Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.715150Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.715268Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.715335Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.715457Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.715518Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.715699Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.716025Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.716157Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:18.716409Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.716485Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.716771Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.717134Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.717553Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.718949Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.719392Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.719821Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:18.719983Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.720340Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.720581Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.720902Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.720969Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.721077Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.721137Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.721251Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.721315Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.721424Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.721486Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.721596Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.721669Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.721786Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.721848Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.722098Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.722382Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.722492Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.722554Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.722662Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.722728Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.722837Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.722897Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.723008Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.723069Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.723649Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724028Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724138Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724202Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724372Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724439Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724545Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724607Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724717Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724779Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724892Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.724952Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.725132Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.725549Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.725661Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.725723Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.725833Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.725892Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.726001Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.726064Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.726182Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.726256Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.726370Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.726434Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.740526Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.740938Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.741007Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.741163Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.741228Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.741314Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.741380Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.742592Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.743197Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:18.743248Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:18.748545Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:18.749091Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:18.749712Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:18.751493Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:18.752425Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T17:36:18.752547Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:18.753386Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:18.754228Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:18.756498Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:18.757514Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:18.763789Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:18.771218Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T17:36:18.775786Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T17:36:18.780256Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:18.780522Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T17:36:19.579996Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.580888Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.584985Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T17:36:19.897035Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.897139Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.897910Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.898767Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.903152Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:19.904761Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:19.965560Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.966499Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:19.970114Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T17:36:20.683006Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.683844Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.687302Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:20.748281Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.749100Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.752531Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:20.796954Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T17:36:20.813784Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.814630Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.818837Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T17:36:20.862054Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:20.879198Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.879284Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.879316Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.880071Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.880921Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.883572Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.884260Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:20.888830Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T17:36:20.890234Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:20.949503Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.949586Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.950536Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.951084Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.955113Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:20.955887Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T17:36:21.065962Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.066068Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.067135Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.067764Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.071593Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:21.072622Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T17:36:21.132448Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.133402Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.136800Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T17:36:21.197529Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.198497Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.201605Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T17:36:21.463219Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.463304Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.464122Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.464707Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.468071Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T17:36:21.469537Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T17:36:21.528970Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.529950Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.533306Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T17:36:21.794817Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.794943Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.795638Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.796222Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.800200Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T17:36:21.802128Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:21.860953Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.861051Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.861082Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.861113Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.861772Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.862414Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.864596Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.865376Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.866174Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T17:36:21.868832Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:21.870195Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T17:36:21.873411Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T17:36:21.902362Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.902474Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.903121Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.903761Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.907117Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:21.908211Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T17:36:21.968181Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.968919Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.972375Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T17:36:22.284177Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.284856Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.288492Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T17:36:22.349609Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.350340Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.354146Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T17:36:22.565575Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.566367Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.570746Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:22.631646Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.632377Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.635939Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:22.696895Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.697612Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.701106Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:22.762374Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.763066Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.766612Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:22.877991Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.878663Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.882426Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T17:36:22.943210Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.943918Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.947641Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T17:36:23.008677Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.009376Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.013049Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T17:36:23.575506Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.575632Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.576274Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.577147Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.581757Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T17:36:23.583193Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:23.642526Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.643614Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.644252Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.645186Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.648977Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:23.649977Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:23.709864Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.709954Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.710458Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.711305Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.715087Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T17:36:23.717055Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T17:36:23.776001Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.776193Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.776904Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.777231Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.780784Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:23.781901Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T17:36:23.841425Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.841525Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.842138Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.842571Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.846110Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T17:36:23.847205Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T17:36:23.906887Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.907732Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.911014Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:24.022070Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.022223Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.023029Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.023764Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.028288Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T17:36:24.029896Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:24.089112Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.089202Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.089826Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.093314Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T17:36:24.504882Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.505530Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.508609Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T17:36:24.569713Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.569809Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.570376Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.573716Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T17:36:24.634572Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.949445Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.949997Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.953528Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T17:36:25.014697Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.279421Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.279945Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.283099Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:25.344737Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.344835Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.345298Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.345605Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.348660Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:25.349718Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:25.410626Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.410728Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.477207Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.477707Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.480785Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T17:36:26.542113Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.856880Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.857337Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.860485Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T17:36:26.921541Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.921831Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.921983Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.922647Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.923374Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.927049Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:26.928596Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:26.929562Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:26.957544Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.957816Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.960671Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:26.961705Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.961753Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.961929Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.964975Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:26.994105Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.995389Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.995567Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.998163Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:27.060081Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.278753Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:37.595262Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:37.595262Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] 
[2026-06-08T17:36:37.595262Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:37.595329Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] 
[2026-06-08T17:36:37.595337Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:37.595343Z] [nf-368e32cc60bfb0698a5b0db1e7338f6a-f67fa-8ktx7] [617_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec