.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (negative_somatic_control_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/8480f539168d043ad18ed80640f40d/.command.log
Size: 1.0 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (negative_somatic_control_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/ca6e4e5fd70cd5c64e848009989d5c/negative_somatic_control_1.snv_indel.tnseq.snv.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/8480f539168d043ad18ed80640f40d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/8480f539168d043ad18ed80640f40d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/bcea7a7bd798bd4d6c2883b020fd45/negative_somatic_control_1.snv_indel.strelka.indel.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/ca6e4e5fd70cd5c64e848009989d5c/negative_somatic_control_1.snv_indel.tnseq.snv.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/bcea7a7bd798bd4d6c2883b020fd45/negative_somatic_control_1.snv_indel.strelka.indel.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
ls: negative_somatic_control_1.snv_indel.merged.vcf.gz.csi: No such file or directory