File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/bb74a5db313845573a92363a7784b6/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-polbrb3c because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:41:20,033 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:41:20,917 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:41:21,112 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:41:22,056 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:41:22,221 - cnv_pipe.batch.run_model - INFO - Processing cluster 1129 with 135 probes
2026-06-08 17:41:22,585 - cnv_pipe.batch.run_model.cluster1129 - INFO - Child process started for cluster 1129 with 135 probes
2026-06-08 17:42:04,637 - cnv_pipe.batch.run_model.cluster1129 - INFO - Child process finished cluster 1129. Wrote cluster_1129_samples.csv and cluster_1129_params.csv
2026-06-08 17:42:04,638 - cnv_pipe.batch.run_model - INFO - Cluster 1129 finished in 42.42 seconds. Status: SUCCESS