cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18630847, elapsed 0.1s, est remaining 1.1s, peak mem 75MB, user 0.1s, sys 0.1s, output queue size 2200
progress 10% @chr1:37761367, elapsed 0.1s, est remaining 1.0s, peak mem 75MB, user 0.1s, sys 0.2s, output queue size 1773
progress 15% @chr1:65405870, elapsed 0.2s, est remaining 1.0s, peak mem 93MB, user 0.2s, sys 0.4s, output queue size 4500
progress 20% @chr1:113854907, elapsed 0.2s, est remaining 0.9s, peak mem 102MB, user 0.2s, sys 0.6s, output queue size 7272
progress 25% @chr1:155247782, elapsed 0.3s, est remaining 0.8s, peak mem 105MB, user 0.2s, sys 0.8s, output queue size 9606
progress 30% @chr1:179102287, elapsed 0.3s, est remaining 0.8s, peak mem 120MB, user 0.3s, sys 1.0s, output queue size 12086
progress 35% @chr1:209792269, elapsed 0.4s, est remaining 0.7s, peak mem 129MB, user 0.4s, sys 1.2s, output queue size 14509
progress 40% @chr1:246986967, elapsed 0.4s, est remaining 0.6s, peak mem 138MB, user 0.4s, sys 1.4s, output queue size 16913
progress 45% @chr2:32595034, elapsed 0.5s, est remaining 0.6s, peak mem 150MB, user 0.4s, sys 1.6s, output queue size 19202
progress 50% @chr2:74461275, elapsed 0.5s, est remaining 0.5s, peak mem 153MB, user 0.5s, sys 1.8s, output queue size 21689
progress 55% @chr2:113499257, elapsed 0.6s, est remaining 0.5s, peak mem 162MB, user 0.5s, sys 2.0s, output queue size 24219
progress 60% @chr2:170996653, elapsed 0.6s, est remaining 0.4s, peak mem 177MB, user 0.6s, sys 2.1s, output queue size 26916
progress 65% @chr2:202785918, elapsed 0.7s, est remaining 0.4s, peak mem 180MB, user 0.6s, sys 2.2s, output queue size 29191
progress 70% @chr2:233772261, elapsed 0.7s, est remaining 0.3s, peak mem 189MB, user 0.7s, sys 2.4s, output queue size 31670
progress 75% @chr3:25733872, elapsed 0.8s, est remaining 0.3s, peak mem 198MB, user 0.7s, sys 2.6s, output queue size 33915
progress 80% @chr3:49805897, elapsed 0.8s, est remaining 0.2s, peak mem 201MB, user 0.7s, sys 2.8s, output queue size 36362
progress 85% @chr3:101859272, elapsed 0.9s, est remaining 0.2s, peak mem 213MB, user 0.8s, sys 3.1s, output queue size 38999
progress 90% @chr3:139578872, elapsed 0.9s, est remaining 0.1s, peak mem 222MB, user 0.8s, sys 3.3s, output queue size 41596
progress 95% @chr3:188609161, elapsed 1.0s, est remaining 0.1s, peak mem 237MB, user 0.8s, sys 3.4s, output queue size 44009
progress 100% @chr4:20519382, elapsed 1.1s, est remaining 0.0s, peak mem 243MB, user 0.8s, sys 3.6s, output queue size 46241
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586810
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.000 user 0.001 sys 0.019 real
advance: 51084 calls 0.016 user 0.006 sys 0.023 real
calc: 100735 calls 0.000 user 0.010 sys 0.019 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.011 user 0.000 sys 3.003 real
fetch: 100735 calls 0.008 user 0.029 sys 0.019 real
fetch_ref: 100735 calls 0.092 user 0.043 sys 0.379 real
idle: 51 calls 0.003 user 0.007 sys 35.934 real
init: 1 calls 0.028 user 0.012 sys 0.043 real
region: 100735 calls 0.007 user 0.001 sys 0.024 real
tracker: 100735 calls 0.030 user 0.009 sys 0.092 real
overall: 258084864 mem 1.522 user 5.549 sys 4.121 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory