File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/8fe9686f20193492d917f827b0b26e/.command.log
Size
8.4 KB
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/1dcd3764ae606bbe65ffb6b69b1c5f/HCC1395_BL_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/ecdf965eec78afb19c3be338f2434d/Sig_18_Blood_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/ac49834ce3228005de882431f9fbfe/Sig_18_Blood.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/bc8e2b08929638db69633255533613/HCC1395_tumor.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/f51604b2a1ba9aad606c7fb8bee82e/HCC1395_BL.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/bd5c4b5b4e5b90df021885244da94a/HCC1395_BL_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/370e95ddbe60d040628d084289e7e9/HCC1395_BL_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/c406c5dd0dabd7db5927c677fba7a9/Sig_18_Blood.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/860f8d990b8b37145f3b60cf0394ff/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/d2a7dc0f636ed86c58d9ce275c9f00/HCC1395_BL_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/68c2f49e93d4c4a0f733e6b1a89100/Sig_18_tissue_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/5b713cbdab993746dbe5e30a8246b1/HCC1395_tumor_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/d6a095aaef6184eeb2343287a40993/HCC1395_tumor.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/25c006f3c444f988c743e719b75c3a/Sig_18_tissue_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/7235c63ef81c8c0e1776d364429c36/Sig_18_tissue.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/39a2feec7013e5ab998a4b8da2732a/Sig_18_tissue.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/f50ac77f7396a98135d6839a1cbd73/Sig_18_tissue_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/6e84513b844e8e673e1762adde5e57/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/13c149a51cf070e17b1a9ac824e806/Sig_18_tissue_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/18186d7be59214c1e5ba8095ae022c/HCC1395_tumor.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/c38617481766805f454f6e006cdfee/Sig_18_Blood_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/8d00efd617d343ee68ea777da82180/Sig_18_Blood.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/165a3d92e00b863385e9295501a651/HCC1395_tumor_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/8fe9686f20193492d917f827b0b26e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/555abdca842f4fcae4d3f19af972b4/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/fa4437f9d2d9f623134c0a9026f01f/HCC1395_BL_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/695bb9b9a2d8a633fd45cc49d56e94/Sig_18_tissue_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/634ab459a7ba98efe39e551cf210d0/Sig_18_Blood_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/5131c4daa0604fd02c7df77e0ff3ad/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/6f9d7fce7c60125387e4b079bc91b4/Sig_18_Blood_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/8fe9686f20193492d917f827b0b26e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/e91f9854f39d2ba06a732938105d20/HCC1395_tumor_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/d7626411e214e3d80a25c3650bfe34/HCC1395_BL.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/d711a1dc1c3cfd5775e4870740f5a3/HCC1395_BL.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/1de3ec8be407c4d2066ce3a99655b2/Sig_18_tissue.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/e81927b54dd93a337304cc118fd89f/HCC1395_tumor_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/78bbf66b5bcbc2cbc8ace4cb9bf5df/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/ee89a224e07b487f81ed41fe63a62f/Sig_18_Blood_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/090bb0a074bc3854fafbd52c6a7ef6/HCC1395_tumor_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/f903662be38dcb53fdb910481d917b/Sig_18_Blood_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/a139f551ed4015a9d46cd58ea2a09a/Sig_18_tissue/Sig_18_tissue_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/61cbd8524a5a7e950a0420cdb608e5/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/59f8cb861d24253906b61924dab175/HCC1395_tumor_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/e43b634065c8a362cc98adf6096e08/HCC1395_BL/HCC1395_BL_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/e49efd7f89344bddd00452ee0fd2e1/HCC1395_BL_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/a853539e68166d16e103b588705599/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/33f80dd6cf6fc6721b53fb738ed210/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/fcb91def944ae04bc0757f3de740af/HCC1395_tumor/HCC1395_tumor_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/cd7c963b0b2180f97b9008a292a332/Sig_18_tissue_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/6abfaee30c2fba35dc3c21c1733893/Sig_18_Blood/Sig_18_Blood_full_basic_stats.tsv
==> STAGING COMPLETE (50 inputs)

Post-dedup QC aggregation complete: 4 samples
Tools: samtools, mosdepth, sentieon, seqtool
Output: postdedup_qc.json