Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/1f8d437761990ed890e1456d2296f8/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/9384d426f020d7726a5a9dacc4301f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/9384d426f020d7726a5a9dacc4301f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-zlbc2kpm because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:40:54,889 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:40:55,762 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:40:55,937 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:40:56,962 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:40:57,163 - cnv_pipe.batch.run_model - INFO - Processing cluster 839 with 200 probes
2026-06-08 17:40:57,540 - cnv_pipe.batch.run_model.cluster839 - INFO - Child process started for cluster 839 with 200 probes
2026-06-08 17:41:59,641 - cnv_pipe.batch.run_model.cluster839 - INFO - Child process finished cluster 839. Wrote cluster_839_samples.csv and cluster_839_params.csv
2026-06-08 17:41:59,642 - cnv_pipe.batch.run_model - INFO - Cluster 839 finished in 62.48 seconds. Status: SUCCESS