File Info

Filename
HCC1395_tumor.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/af0c565907198621c40991bd318828/HCC1395_tumor.csv
Size
1.4 MB
Task
DAQ:SENTIEON_BQSR:QUALCAL_APPLY (HCC1395_tumor)
Attempt

Content

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ReadGroup CovariateValue CovariateName EventType Observations Errors EmpiricalQuality AverageReportedQuality Accuracy Recalibration
REGRESSION.HCC1395_tumor.L001 AA Context Base Substitution 527509 1342.95 26.00 29.67 -3.67 Before
REGRESSION.HCC1395_tumor.L001 AAA Context Base Insertion 179094 30.42 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L001 AAA Context Base Deletion 179094 85.83 41.00 45.00 -4.00 Before
REGRESSION.HCC1395_tumor.L001 AAC Context Base Insertion 86062 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AAC Context Base Deletion 86062 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AAG Context Base Insertion 135271 2.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AAG Context Base Deletion 135271 5.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AAT Context Base Insertion 101892 0.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AAT Context Base Deletion 101892 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AC Context Base Substitution 358870 1129.35 25.00 28.71 -3.71 Before
REGRESSION.HCC1395_tumor.L001 ACA Context Base Insertion 132953 3.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACA Context Base Deletion 132953 5.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACC Context Base Insertion 105196 2.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACC Context Base Deletion 105196 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACG Context Base Insertion 20515 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACG Context Base Deletion 20515 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACT Context Base Insertion 105512 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACT Context Base Deletion 105512 3.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AG Context Base Substitution 564754 521.65 30.00 31.85 -1.85 Before
REGRESSION.HCC1395_tumor.L001 AGA Context Base Insertion 152328 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGA Context Base Deletion 152328 4.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGC Context Base Insertion 140939 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGC Context Base Deletion 140939 3.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGG Context Base Insertion 164284 4.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGG Context Base Deletion 164284 3.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGT Context Base Insertion 103827 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGT Context Base Deletion 103827 5.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AT Context Base Substitution 370416 470.28 29.00 32.20 -3.20 Before
REGRESSION.HCC1395_tumor.L001 ATA Context Base Insertion 74572 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATA Context Base Deletion 74572 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATC Context Base Insertion 79006 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATC Context Base Deletion 79006 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATG Context Base Insertion 115535 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATG Context Base Deletion 115535 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATT Context Base Insertion 109130 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATT Context Base Deletion 109130 2.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CA Context Base Substitution 598019 1228.15 27.00 30.04 -3.04 Before
REGRESSION.HCC1395_tumor.L001 CAA Context Base Insertion 113330 4.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAA Context Base Deletion 113330 4.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAC Context Base Insertion 125763 5.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAC Context Base Deletion 125763 5.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAG Context Base Insertion 214619 5.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAG Context Base Deletion 214619 9.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAT Context Base Insertion 111679 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAT Context Base Deletion 111679 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CC Context Base Substitution 554237 1754.96 25.00 28.98 -3.98 Before
REGRESSION.HCC1395_tumor.L001 CCA Context Base Insertion 177783 2.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCA Context Base Deletion 177783 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCC Context Base Insertion 152202 5.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCC Context Base Deletion 152202 5.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCG Context Base Insertion 36858 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCG Context Base Deletion 36858 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCT Context Base Insertion 179188 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCT Context Base Deletion 179188 5.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CG Context Base Substitution 112314 355.84 26.00 29.93 -3.93 Before
REGRESSION.HCC1395_tumor.L001 CGA Context Base Insertion 44528 3.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGA Context Base Deletion 44528 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGC Context Base Insertion 63556 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGC Context Base Deletion 63556 2.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGG Context Base Insertion 76882 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGG Context Base Deletion 76882 3.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGT Context Base Insertion 49751 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGT Context Base Deletion 49751 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CT Context Base Substitution 599626 441.12 31.00 32.53 -1.53 Before
REGRESSION.HCC1395_tumor.L001 CTA Context Base Insertion 58647 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTA Context Base Deletion 58647 3.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTC Context Base Insertion 146290 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTC Context Base Deletion 146290 9.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTG Context Base Insertion 215192 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTG Context Base Deletion 215192 5.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTT Context Base Insertion 147509 2.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTT Context Base Deletion 147509 4.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GA Context Base Substitution 498067 808.29 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L001 GAA Context Base Insertion 142549 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAA Context Base Deletion 142549 3.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAC Context Base Insertion 84270 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAC Context Base Deletion 84270 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAG Context Base Insertion 150115 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAG Context Base Deletion 150115 3.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAT Context Base Insertion 83421 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAT Context Base Deletion 83421 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GC Context Base Substitution 490049 1083.33 27.00 30.33 -3.33 Before
REGRESSION.HCC1395_tumor.L001 GCA Context Base Insertion 149566 2.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCA Context Base Deletion 149566 3.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCC Context Base Insertion 147291 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCC Context Base Deletion 147291 5.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCG Context Base Insertion 35741 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCG Context Base Deletion 35741 1.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCT Context Base Insertion 156584 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCT Context Base Deletion 156584 2.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GG Context Base Substitution 579152 760.19 29.00 31.76 -2.76 Before
REGRESSION.HCC1395_tumor.L001 GGA Context Base Insertion 157155 2.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGA Context Base Deletion 157155 5.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGC Context Base Insertion 145389 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGC Context Base Deletion 145389 5.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGG Context Base Insertion 158666 3.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGG Context Base Deletion 158666 11.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGT Context Base Insertion 115620 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGT Context Base Deletion 115620 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GT Context Base Substitution 411941 695.35 28.00 32.26 -4.26 Before
REGRESSION.HCC1395_tumor.L001 GTA Context Base Insertion 66830 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTA Context Base Deletion 66830 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTC Context Base Insertion 92043 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTC Context Base Deletion 92043 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTG Context Base Insertion 140834 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTG Context Base Deletion 140834 10.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTT Context Base Insertion 100388 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTT Context Base Deletion 100388 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TA Context Base Substitution 289590 783.50 26.00 29.83 -3.83 Before
REGRESSION.HCC1395_tumor.L001 TAA Context Base Insertion 87925 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAA Context Base Deletion 87925 4.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAC Context Base Insertion 60429 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAC Context Base Deletion 60429 3.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAG Context Base Insertion 60247 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAG Context Base Deletion 60247 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAT Context Base Insertion 70770 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAT Context Base Deletion 70770 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TC Context Base Substitution 450890 1002.62 27.00 30.54 -3.54 Before
REGRESSION.HCC1395_tumor.L001 TCA Context Base Insertion 132896 2.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCA Context Base Deletion 132896 5.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCC Context Base Insertion 145941 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCC Context Base Deletion 145941 3.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCG Context Base Insertion 18337 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCG Context Base Deletion 18337 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCT Context Base Insertion 154245 2.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCT Context Base Deletion 154245 5.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TG Context Base Substitution 590715 458.24 31.00 31.86 -0.86 Before
REGRESSION.HCC1395_tumor.L001 TGA Context Base Insertion 140128 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGA Context Base Deletion 140128 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGC Context Base Insertion 136971 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGC Context Base Deletion 136971 2.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGG Context Base Insertion 175036 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGG Context Base Deletion 175036 6.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGT Context Base Insertion 140067 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGT Context Base Deletion 140067 7.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TT Context Base Substitution 539885 698.63 29.00 32.87 -3.87 Before
REGRESSION.HCC1395_tumor.L001 TTA Context Base Insertion 87285 2.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTA Context Base Deletion 87285 4.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTC Context Base Insertion 130916 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTC Context Base Deletion 130916 5.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTG Context Base Insertion 114910 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTG Context Base Deletion 114910 2.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTT Context Base Insertion 179211 22.28 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L001 TTT Context Base Deletion 179211 54.52 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L001 -1 Cycle Base Substitution 26809 89.72 25.00 26.02 -1.02 Before
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Substitution 27018 42.45 31.00 32.19 -1.19 Before
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Insertion 27018 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Deletion 27018 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Substitution 25058 39.57 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Insertion 24821 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Deletion 24821 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Substitution 24966 54.37 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Insertion 24725 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Deletion 24725 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Substitution 24888 54.42 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Insertion 24628 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Deletion 24628 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Substitution 24721 49.33 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Insertion 24461 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Deletion 24461 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Substitution 24692 39.27 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Insertion 24405 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Deletion 24405 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Substitution 24600 47.13 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Insertion 24306 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Deletion 24306 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Substitution 24652 46.46 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Insertion 24378 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Deletion 24378 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Substitution 24471 43.68 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Insertion 24204 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Deletion 24204 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Substitution 24464 48.24 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Insertion 24191 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Deletion 24191 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Substitution 24388 41.50 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Insertion 24132 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Deletion 24132 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Substitution 27067 44.10 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Insertion 27067 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Deletion 27067 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Substitution 24389 50.41 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Insertion 24103 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Deletion 24103 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Substitution 24279 44.56 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Insertion 23974 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Deletion 23974 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Substitution 24269 36.00 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Insertion 23965 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Deletion 23965 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Substitution 24185 27.69 30.00 30.33 -0.33 Before
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Insertion 23892 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Deletion 23892 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Substitution 24120 38.92 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Insertion 23845 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Deletion 23845 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Substitution 24125 52.23 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Insertion 23850 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Deletion 23850 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Substitution 23929 47.00 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Insertion 23654 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Deletion 23654 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Substitution 23849 49.31 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Insertion 23559 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Deletion 23559 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Substitution 23867 37.99 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Insertion 23552 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Deletion 23552 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Substitution 23759 48.25 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Insertion 23446 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Deletion 23446 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Substitution 27029 31.88 30.00 31.97 -1.97 Before
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Insertion 27029 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Deletion 27029 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Substitution 23672 54.35 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Insertion 23382 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Deletion 23382 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Substitution 23715 56.61 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Insertion 23422 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Deletion 23422 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Substitution 23537 44.74 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Insertion 23263 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Deletion 23263 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Substitution 23498 59.95 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Insertion 23210 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Deletion 23210 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Substitution 23452 37.41 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Insertion 23135 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Deletion 23135 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Substitution 23367 49.66 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Insertion 23058 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Deletion 23058 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Substitution 23346 46.51 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Insertion 23030 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Deletion 23030 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Substitution 23351 54.12 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Insertion 23044 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Deletion 23044 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Substitution 23160 47.33 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Insertion 22852 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Deletion 22852 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Substitution 23103 57.60 28.00 30.04 -2.04 Before
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Insertion 22804 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Deletion 22804 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Substitution 27018 39.89 30.00 31.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Insertion 27018 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Deletion 27018 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Substitution 23065 33.44 30.00 30.07 -0.07 Before
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Insertion 22745 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Deletion 22745 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Substitution 22983 41.92 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Insertion 22647 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Deletion 22647 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Substitution 22962 43.59 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Insertion 22613 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Deletion 22613 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Substitution 22827 43.36 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Insertion 22476 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Deletion 22476 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Substitution 22704 35.10 29.00 29.88 -0.88 Before
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Insertion 22368 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Deletion 22368 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Substitution 22646 49.39 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Insertion 22306 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Deletion 22306 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Substitution 22531 47.28 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Insertion 22181 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Deletion 22181 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Substitution 22420 35.82 29.00 29.59 -0.59 Before
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Insertion 22064 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Deletion 22064 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Substitution 22391 36.64 29.00 29.85 -0.85 Before
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Insertion 22004 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Deletion 22004 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Substitution 22345 48.11 28.00 29.55 -1.55 Before
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Insertion 21966 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Deletion 21966 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Substitution 27029 45.08 30.00 31.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Insertion 27029 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Deletion 27029 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Substitution 22329 34.37 29.00 29.87 -0.87 Before
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Insertion 21918 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Deletion 21918 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Substitution 22195 28.54 29.00 29.68 -0.68 Before
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Insertion 21769 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Deletion 21769 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Substitution 22102 30.00 29.00 29.80 -0.80 Before
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Insertion 21661 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Deletion 21661 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Substitution 21923 31.13 29.00 29.91 -0.91 Before
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Insertion 21475 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Deletion 21475 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Substitution 21848 35.39 29.00 29.67 -0.67 Before
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Insertion 21384 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Deletion 21384 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Substitution 21755 39.02 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Insertion 16718 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Deletion 16718 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Substitution 21674 65.14 27.00 29.98 -2.98 Before
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Insertion 16646 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Deletion 16646 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -147 Cycle Base Substitution 21534 223.59 23.00 30.17 -7.17 Before
REGRESSION.HCC1395_tumor.L001 -148 Cycle Base Substitution 21357 857.24 15.00 30.31 -15.31 Before
REGRESSION.HCC1395_tumor.L001 -149 Cycle Base Substitution 13322 779.46 14.00 30.98 -16.98 Before
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Substitution 26931 31.78 31.00 32.06 -1.06 Before
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Insertion 26931 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Deletion 26931 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -150 Cycle Base Substitution 4686 7.51 30.00 30.52 -0.52 Before
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Substitution 26942 40.78 30.00 31.71 -1.71 Before
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Insertion 26942 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Deletion 26942 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Substitution 27013 41.70 30.00 31.79 -1.79 Before
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Insertion 27013 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Deletion 27013 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Substitution 27031 29.31 31.00 32.09 -1.09 Before
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Insertion 27031 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Deletion 27031 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Substitution 26858 38.39 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Insertion 26858 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Deletion 26858 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -2 Cycle Base Substitution 27217 72.88 27.00 28.66 -1.66 Before
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Substitution 27002 36.20 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Insertion 27002 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Deletion 27002 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Substitution 26895 35.45 31.00 32.18 -1.18 Before
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Insertion 26895 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Deletion 26895 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Substitution 26936 40.89 31.00 32.17 -1.17 Before
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Insertion 26936 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Deletion 26936 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Substitution 26881 31.70 31.00 32.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Insertion 26881 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Deletion 26881 1.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Substitution 26890 38.88 30.00 31.98 -1.98 Before
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Insertion 26890 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Deletion 26890 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Substitution 26894 35.58 30.00 31.76 -1.76 Before
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Insertion 26894 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Deletion 26894 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Substitution 26762 35.20 30.00 30.68 -0.68 Before
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Insertion 26762 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Deletion 26762 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Substitution 26878 32.44 30.00 30.17 -0.17 Before
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Insertion 26878 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Deletion 26878 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Substitution 26924 46.56 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Insertion 26924 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Deletion 26924 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Substitution 26893 27.65 30.00 30.75 -0.75 Before
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Insertion 26893 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Deletion 26893 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -3 Cycle Base Substitution 27283 69.02 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Substitution 26839 47.20 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Insertion 26838 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Deletion 26838 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Substitution 26844 37.40 30.00 30.49 -0.49 Before
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Insertion 26843 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Deletion 26843 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Substitution 26759 39.56 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Insertion 26758 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Deletion 26758 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Substitution 26813 31.97 30.00 30.65 -0.65 Before
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Insertion 26812 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Deletion 26812 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Substitution 26782 29.19 30.00 30.80 -0.80 Before
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Insertion 26781 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Deletion 26781 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Substitution 26734 35.06 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Insertion 26733 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Deletion 26733 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Substitution 26822 38.44 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Insertion 26822 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Deletion 26822 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Substitution 26795 30.93 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Insertion 26794 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Deletion 26794 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Substitution 26671 41.90 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Insertion 26669 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Deletion 26669 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Substitution 26713 36.37 30.00 30.65 -0.65 Before
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Insertion 26712 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Deletion 26712 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -4 Cycle Base Substitution 27135 63.05 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Substitution 26696 32.72 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Insertion 26695 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Deletion 26695 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Substitution 26637 29.91 30.00 30.62 -0.62 Before
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Insertion 26634 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Deletion 26634 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Substitution 26733 33.97 30.00 30.81 -0.81 Before
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Insertion 26729 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Deletion 26729 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Substitution 26762 32.28 30.00 30.66 -0.66 Before
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Insertion 26756 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Deletion 26756 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Substitution 26773 37.66 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Insertion 26765 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Deletion 26765 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Substitution 26746 38.22 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Insertion 26736 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Deletion 26736 2.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Substitution 26691 34.15 30.00 30.95 -0.95 Before
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Insertion 26683 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Deletion 26683 2.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Substitution 26625 39.19 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Insertion 26619 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Deletion 26619 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Substitution 26558 34.73 30.00 30.89 -0.89 Before
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Insertion 26549 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Deletion 26549 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Substitution 26660 32.84 30.00 30.44 -0.44 Before
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Insertion 26646 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Deletion 26646 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Substitution 27148 38.80 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Insertion 27148 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Deletion 27148 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Substitution 26689 43.30 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Insertion 26670 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Deletion 26670 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Substitution 26761 47.17 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Insertion 26744 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Deletion 26744 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Substitution 26616 45.96 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Insertion 26599 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Deletion 26599 3.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Substitution 26642 42.79 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Insertion 26625 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Deletion 26625 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Substitution 26572 43.33 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Insertion 26554 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Deletion 26554 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Substitution 26698 52.60 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Insertion 26675 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Deletion 26675 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Substitution 26463 49.60 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Insertion 26435 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Deletion 26435 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Substitution 26591 38.76 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Insertion 26546 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Deletion 26546 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Substitution 26571 28.50 30.00 30.91 -0.91 Before
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Insertion 26529 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Deletion 26529 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Substitution 26520 45.41 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Insertion 26459 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Deletion 26459 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Substitution 26933 44.52 30.00 31.22 -1.22 Before
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Insertion 26933 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Deletion 26933 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Substitution 26487 44.40 29.00 30.91 -1.91 Before
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Insertion 26430 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Deletion 26430 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Substitution 26349 47.74 29.00 30.70 -1.70 Before
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Insertion 26290 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Deletion 26290 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Substitution 26569 42.12 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Insertion 26505 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Deletion 26505 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Substitution 26427 28.00 31.00 31.02 -0.02 Before
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Insertion 26371 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Deletion 26371 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Substitution 26292 28.65 31.00 31.06 -0.06 Before
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Insertion 26227 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Deletion 26227 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Substitution 26326 42.82 29.00 30.93 -1.93 Before
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Insertion 26253 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Deletion 26253 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Substitution 26385 42.50 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Insertion 26297 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Deletion 26297 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Substitution 26330 34.84 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Insertion 26239 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Deletion 26239 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Substitution 26229 41.15 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Insertion 26136 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Deletion 26136 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Substitution 26305 40.02 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Insertion 26213 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Deletion 26213 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Substitution 27067 51.86 29.00 30.83 -1.83 Before
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Insertion 27067 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Deletion 27067 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Substitution 26223 30.88 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Insertion 26136 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Deletion 26136 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Substitution 26239 47.09 29.00 30.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Insertion 26135 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Deletion 26135 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Substitution 26183 38.48 29.00 30.86 -1.86 Before
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Insertion 26076 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Deletion 26076 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Substitution 26140 50.05 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Insertion 26023 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Deletion 26023 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Substitution 26153 44.59 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Insertion 26029 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Deletion 26029 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Substitution 26143 51.60 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Insertion 26013 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Deletion 26013 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Substitution 26048 42.39 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Insertion 25914 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Deletion 25914 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Substitution 26044 32.46 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Insertion 25906 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Deletion 25906 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Substitution 25953 38.08 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Insertion 25796 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Deletion 25796 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Substitution 25987 37.60 29.00 30.91 -1.91 Before
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Insertion 25818 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Deletion 25818 2.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Substitution 27074 43.12 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Insertion 27074 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Deletion 27074 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Substitution 25913 35.41 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Insertion 25764 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Deletion 25764 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Substitution 25853 33.72 30.00 30.77 -0.77 Before
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Insertion 25687 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Deletion 25687 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Substitution 25886 52.34 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Insertion 25718 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Deletion 25718 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Substitution 25695 46.64 29.00 30.91 -1.91 Before
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Insertion 25524 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Deletion 25524 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Substitution 25765 41.79 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Insertion 25598 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Deletion 25598 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Substitution 25698 46.34 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Insertion 25501 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Deletion 25501 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Substitution 25628 48.36 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Insertion 25456 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Deletion 25456 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Substitution 25558 49.72 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Insertion 25361 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Deletion 25361 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Substitution 25504 47.66 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Insertion 25324 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Deletion 25324 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Substitution 25562 47.53 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Insertion 25382 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Deletion 25382 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Substitution 27194 38.74 30.00 31.17 -1.17 Before
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Insertion 27194 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Deletion 27194 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Substitution 25520 49.21 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Insertion 25317 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Deletion 25317 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Substitution 25404 42.66 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Insertion 25208 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Deletion 25208 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Substitution 25403 34.08 30.00 30.99 -0.99 Before
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Insertion 25185 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Deletion 25185 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Substitution 25241 45.57 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Insertion 25021 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Deletion 25021 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Substitution 25443 41.85 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Insertion 25212 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Deletion 25212 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Substitution 25215 40.99 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Insertion 24960 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Deletion 24960 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Substitution 25252 50.05 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Insertion 24984 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Deletion 24984 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Substitution 25132 42.10 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Insertion 24887 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Deletion 24887 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Substitution 25048 55.11 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Insertion 24818 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Deletion 24818 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Substitution 25041 43.56 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Insertion 24809 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Deletion 24809 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 1 Cycle Base Substitution 26806 58.08 27.00 28.76 -1.76 Before
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Substitution 27128 32.21 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Insertion 27128 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Deletion 27128 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Substitution 25028 41.70 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Insertion 24786 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Deletion 24786 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Substitution 24904 31.35 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Insertion 24643 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Deletion 24643 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Substitution 24764 54.90 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Insertion 24496 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Deletion 24496 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Substitution 24709 35.68 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Insertion 24434 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Deletion 24434 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Substitution 24762 32.25 30.00 30.81 -0.81 Before
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Insertion 24484 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Deletion 24484 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Substitution 24658 39.11 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Insertion 24370 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Deletion 24370 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Substitution 24504 49.48 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Insertion 24225 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Deletion 24225 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Substitution 24602 43.24 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Insertion 24335 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Deletion 24335 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Substitution 24463 54.89 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Insertion 24182 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Deletion 24182 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Substitution 24376 39.72 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Insertion 24111 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Deletion 24111 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Substitution 27044 32.57 30.00 31.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Insertion 27044 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Deletion 27044 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Substitution 24323 36.74 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Insertion 24034 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Deletion 24034 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Substitution 24212 39.88 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Insertion 23920 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Deletion 23920 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Substitution 24270 50.86 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Insertion 23983 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Deletion 23983 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Substitution 24278 43.28 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Insertion 23972 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Deletion 23972 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Substitution 23998 50.38 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Insertion 23725 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Deletion 23725 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Substitution 24077 40.32 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Insertion 23800 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Deletion 23800 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Substitution 23973 37.77 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Insertion 23679 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Deletion 23679 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Substitution 23846 48.15 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Insertion 23557 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Deletion 23557 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Substitution 23819 37.10 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Insertion 23522 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Deletion 23522 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Substitution 23760 38.32 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Insertion 23458 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Deletion 23458 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Substitution 27071 30.18 31.00 31.07 -0.07 Before
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Insertion 27071 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Deletion 27071 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Substitution 23737 42.45 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Insertion 23442 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Deletion 23442 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Substitution 23619 46.71 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Insertion 23348 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Deletion 23348 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Substitution 23564 48.63 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Insertion 23281 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Deletion 23281 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Substitution 23555 27.55 30.00 30.23 -0.23 Before
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Insertion 23252 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Deletion 23252 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Substitution 23521 34.65 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Insertion 23205 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Deletion 23205 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Substitution 23398 44.87 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Insertion 23087 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Deletion 23087 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Substitution 23250 41.14 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Insertion 22937 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Deletion 22937 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Substitution 23287 35.93 29.00 29.99 -0.99 Before
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Insertion 22985 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Deletion 22985 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Substitution 23174 45.86 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Insertion 22857 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Deletion 22857 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Substitution 23156 38.07 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Insertion 22860 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Deletion 22860 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Substitution 27031 28.90 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Insertion 27031 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Deletion 27031 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Substitution 22948 47.10 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Insertion 22634 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Deletion 22634 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Substitution 22868 43.90 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Insertion 22535 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Deletion 22535 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Substitution 22821 42.44 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Insertion 22482 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Deletion 22482 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Substitution 22795 39.90 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Insertion 22470 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Deletion 22470 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Substitution 22695 43.25 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Insertion 22368 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Deletion 22368 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Substitution 22603 44.00 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Insertion 22276 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Deletion 22276 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Substitution 22463 27.31 30.00 30.39 -0.39 Before
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Insertion 22139 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Deletion 22139 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Substitution 22527 44.64 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Insertion 22204 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Deletion 22204 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Substitution 22383 45.44 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Insertion 22025 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Deletion 22025 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Substitution 22288 49.19 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Insertion 21940 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Deletion 21940 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Substitution 27061 29.54 31.00 31.24 -0.24 Before
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Insertion 27061 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Deletion 27061 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Substitution 22204 46.92 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Insertion 21846 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Deletion 21846 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Substitution 22262 27.65 29.00 29.89 -0.89 Before
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Insertion 21902 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Deletion 21902 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Substitution 21981 45.34 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Insertion 21620 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Deletion 21620 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Substitution 22028 54.15 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Insertion 21668 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Deletion 21668 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Substitution 21932 38.95 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Insertion 21588 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Deletion 21588 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Substitution 21778 39.92 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Insertion 21432 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Deletion 21432 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Substitution 21779 40.07 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Insertion 21459 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Deletion 21459 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 147 Cycle Base Substitution 21625 41.80 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 148 Cycle Base Substitution 21591 44.14 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L001 149 Cycle Base Substitution 21521 38.09 29.00 29.67 -0.67 Before
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Substitution 27055 29.21 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Insertion 27055 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Deletion 27055 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 150 Cycle Base Substitution 21371 36.13 29.00 29.95 -0.95 Before
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Substitution 26926 23.88 32.00 32.89 -0.89 Before
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Insertion 26926 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Deletion 26926 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Substitution 26788 23.27 32.00 32.90 -0.90 Before
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Insertion 26788 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Deletion 26788 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Substitution 26919 28.33 32.00 33.04 -1.04 Before
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Insertion 26919 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Deletion 26919 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Substitution 27008 21.14 32.00 32.76 -0.76 Before
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Insertion 27008 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Deletion 27008 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 2 Cycle Base Substitution 27150 49.32 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Substitution 26895 24.77 32.00 33.02 -1.02 Before
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Insertion 26895 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Deletion 26895 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Substitution 26930 29.03 31.00 32.92 -1.92 Before
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Insertion 26930 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Deletion 26930 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Substitution 26909 20.40 33.00 33.02 -0.02 Before
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Insertion 26909 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Deletion 26909 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Substitution 26922 19.07 32.00 32.92 -0.92 Before
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Insertion 26922 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Deletion 26922 2.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Substitution 26917 20.24 33.00 33.05 -0.05 Before
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Insertion 26917 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Deletion 26917 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Substitution 26883 18.58 33.00 33.28 -0.28 Before
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Insertion 26883 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Deletion 26883 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Substitution 26980 33.62 30.00 31.40 -1.40 Before
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Insertion 26980 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Deletion 26980 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Substitution 26882 29.34 31.00 31.71 -0.71 Before
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Insertion 26882 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Deletion 26882 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Substitution 26920 35.43 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Insertion 26920 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Deletion 26920 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Substitution 26892 29.10 31.00 31.98 -0.98 Before
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Insertion 26892 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Deletion 26892 2.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 3 Cycle Base Substitution 27152 48.16 30.00 31.22 -1.22 Before
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Substitution 26891 31.57 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Insertion 26891 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Deletion 26891 2.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Substitution 26812 27.87 31.00 31.93 -0.93 Before
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Insertion 26812 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Deletion 26812 2.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Substitution 26853 39.61 30.00 31.05 -1.05 Before
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Insertion 26852 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Deletion 26852 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Substitution 26660 39.01 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Insertion 26659 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Deletion 26659 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Substitution 26844 32.03 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Insertion 26843 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Deletion 26843 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Substitution 26781 37.50 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Insertion 26779 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Deletion 26779 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Substitution 26860 34.74 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Insertion 26858 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Deletion 26858 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Substitution 26764 27.52 31.00 31.87 -0.87 Before
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Insertion 26762 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Deletion 26762 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Substitution 26845 36.85 30.00 31.82 -1.82 Before
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Insertion 26842 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Deletion 26842 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Substitution 26806 19.11 31.00 31.41 -0.41 Before
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Insertion 26805 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Deletion 26805 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 4 Cycle Base Substitution 27110 70.03 28.00 31.00 -3.00 Before
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Substitution 26890 30.43 31.00 31.48 -0.48 Before
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Insertion 26889 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Deletion 26889 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Substitution 26852 35.76 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Insertion 26850 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Deletion 26850 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Substitution 26724 38.41 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Insertion 26722 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Deletion 26722 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Substitution 26722 27.90 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Insertion 26716 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Deletion 26716 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Substitution 26834 20.26 31.00 31.60 -0.60 Before
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Insertion 26825 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Deletion 26825 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Substitution 26624 28.43 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Insertion 26616 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Deletion 26616 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Substitution 26688 26.08 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Insertion 26679 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Deletion 26679 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Substitution 26650 35.08 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Insertion 26644 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Deletion 26644 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Substitution 26711 33.34 30.00 31.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Insertion 26700 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Deletion 26700 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Substitution 26742 28.79 31.00 31.38 -0.38 Before
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Insertion 26728 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Deletion 26728 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Substitution 27114 37.96 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Insertion 27114 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Deletion 27114 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Substitution 26612 35.30 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Insertion 26590 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Deletion 26590 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Substitution 26615 37.65 30.00 31.32 -1.32 Before
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Insertion 26595 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Deletion 26595 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Substitution 26613 33.85 30.00 31.59 -1.59 Before
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Insertion 26595 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Deletion 26595 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Substitution 26690 38.99 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Insertion 26669 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Deletion 26669 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Substitution 26601 33.70 30.00 31.22 -1.22 Before
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Insertion 26579 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Deletion 26579 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Substitution 26624 29.69 31.00 31.72 -0.72 Before
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Insertion 26600 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Deletion 26600 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Substitution 26560 32.02 30.00 31.31 -1.31 Before
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Insertion 26525 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Deletion 26525 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Substitution 26623 49.39 30.00 31.17 -1.17 Before
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Insertion 26582 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Deletion 26582 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Substitution 26552 36.30 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Insertion 26507 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Deletion 26507 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Substitution 26563 26.50 31.00 31.32 -0.32 Before
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Insertion 26503 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Deletion 26503 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Substitution 27052 41.21 30.00 31.21 -1.21 Before
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Insertion 27052 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Deletion 27052 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Substitution 26538 37.54 30.00 31.36 -1.36 Before
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Insertion 26480 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Deletion 26480 2.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Substitution 26537 35.16 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Insertion 26480 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Deletion 26480 2.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Substitution 26565 35.06 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Insertion 26506 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Deletion 26506 2.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Substitution 26453 45.89 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Insertion 26390 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Deletion 26390 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Substitution 26527 33.03 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Insertion 26453 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Deletion 26453 2.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Substitution 26365 40.55 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Insertion 26294 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Deletion 26294 2.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Substitution 26307 35.84 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Insertion 26220 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Deletion 26220 2.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Substitution 26439 39.14 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Insertion 26348 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Deletion 26348 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Substitution 26400 40.12 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Insertion 26304 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Deletion 26304 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Substitution 26288 35.38 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Insertion 26186 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Deletion 26186 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Substitution 27111 29.58 31.00 31.10 -0.10 Before
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Insertion 27111 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Deletion 27111 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Substitution 26309 33.35 30.00 31.78 -1.78 Before
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Insertion 26214 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Deletion 26214 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Substitution 26182 34.03 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Insertion 26079 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Deletion 26079 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Substitution 26121 36.50 30.00 31.62 -1.62 Before
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Insertion 26015 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Deletion 26015 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Substitution 26200 44.05 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Insertion 26075 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Deletion 26075 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Substitution 26138 41.76 30.00 31.38 -1.38 Before
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Insertion 26016 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Deletion 26016 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Substitution 26132 41.28 30.00 31.05 -1.05 Before
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Insertion 26001 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Deletion 26001 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Substitution 26179 33.45 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Insertion 26038 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Deletion 26038 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Substitution 26062 40.73 29.00 30.93 -1.93 Before
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Insertion 25923 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Deletion 25923 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Substitution 25906 37.17 29.00 30.95 -1.95 Before
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Insertion 25746 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Deletion 25746 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Substitution 25880 42.90 29.00 30.95 -1.95 Before
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Insertion 25707 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Deletion 25707 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Substitution 27096 30.91 31.00 31.57 -0.57 Before
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Insertion 27096 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Deletion 27096 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Substitution 25926 28.67 31.00 31.23 -0.23 Before
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Insertion 25756 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Deletion 25756 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Substitution 25853 39.65 29.00 30.94 -1.94 Before
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Insertion 25680 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Deletion 25680 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Substitution 25830 38.12 29.00 30.96 -1.96 Before
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Insertion 25652 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Deletion 25652 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Substitution 25847 46.78 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Insertion 25677 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Deletion 25677 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Substitution 25724 32.16 30.00 30.94 -0.94 Before
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Insertion 25533 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Deletion 25533 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Substitution 25742 31.64 30.00 31.16 -1.16 Before
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Insertion 25541 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Deletion 25541 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Substitution 25558 42.06 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Insertion 25381 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Deletion 25381 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Substitution 25570 39.92 29.00 30.93 -1.93 Before
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Insertion 25388 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Deletion 25388 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Substitution 25533 41.10 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Insertion 25350 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Deletion 25350 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Substitution 25563 40.80 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Insertion 25382 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Deletion 25382 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Substitution 27116 30.83 31.00 31.14 -0.14 Before
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Insertion 27116 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Deletion 27116 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Substitution 25570 44.87 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Insertion 25367 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Deletion 25367 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Substitution 25515 40.39 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Insertion 25321 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Deletion 25321 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Substitution 25509 42.28 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Insertion 25288 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Deletion 25288 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Substitution 25318 38.80 29.00 30.75 -1.75 Before
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Insertion 25084 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Deletion 25084 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Substitution 25356 44.12 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Insertion 25122 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Deletion 25122 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Substitution 25272 37.90 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Insertion 25021 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Deletion 25021 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Substitution 25217 47.96 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Insertion 24959 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Deletion 24959 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Substitution 25189 46.15 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Insertion 24941 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Deletion 24941 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Substitution 24984 43.90 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Insertion 24744 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Deletion 24744 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Substitution 24961 43.55 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Insertion 24735 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Deletion 24735 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 12 QualityScore Base Substitution 78651 7466.23 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L001 24 QualityScore Base Substitution 192910 793.67 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 40 QualityScore Base Substitution 7318099 5423.36 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L001 45 QualityScore Base Insertion 7589660 144.51 46.00 45.00 1.00 Before
REGRESSION.HCC1395_tumor.L001 45 QualityScore Base Deletion 7589660 357.93 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L002 AA Context Base Substitution 537266 1439.23 26.00 29.46 -3.46 Before
REGRESSION.HCC1395_tumor.L002 AAA Context Base Insertion 182789 30.44 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L002 AAA Context Base Deletion 182789 80.88 41.00 45.00 -4.00 Before
REGRESSION.HCC1395_tumor.L002 AAC Context Base Insertion 87527 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AAC Context Base Deletion 87527 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AAG Context Base Insertion 137233 3.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AAG Context Base Deletion 137233 3.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AAT Context Base Insertion 104275 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AAT Context Base Deletion 104275 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AC Context Base Substitution 363221 1226.84 25.00 28.66 -3.66 Before
REGRESSION.HCC1395_tumor.L002 ACA Context Base Insertion 134614 5.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACA Context Base Deletion 134614 7.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACC Context Base Insertion 106437 3.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACC Context Base Deletion 106437 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACG Context Base Insertion 21076 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACG Context Base Deletion 21076 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACT Context Base Insertion 107018 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACT Context Base Deletion 107018 5.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AG Context Base Substitution 573042 569.29 30.00 31.71 -1.71 Before
REGRESSION.HCC1395_tumor.L002 AGA Context Base Insertion 156037 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGA Context Base Deletion 156037 3.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGC Context Base Insertion 142231 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGC Context Base Deletion 142231 4.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGG Context Base Insertion 166591 6.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGG Context Base Deletion 166591 3.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGT Context Base Insertion 104457 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGT Context Base Deletion 104457 3.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AT Context Base Substitution 379341 515.63 29.00 32.00 -3.00 Before
REGRESSION.HCC1395_tumor.L002 ATA Context Base Insertion 76871 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATA Context Base Deletion 76871 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATC Context Base Insertion 81218 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATC Context Base Deletion 81218 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATG Context Base Insertion 117266 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATG Context Base Deletion 117266 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATT Context Base Insertion 111082 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATT Context Base Deletion 111082 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CA Context Base Substitution 605944 1363.48 27.00 29.82 -2.82 Before
REGRESSION.HCC1395_tumor.L002 CAA Context Base Insertion 114968 2.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAA Context Base Deletion 114968 3.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAC Context Base Insertion 127651 7.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAC Context Base Deletion 127651 8.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAG Context Base Insertion 216886 5.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAG Context Base Deletion 216886 9.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAT Context Base Insertion 113782 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAT Context Base Deletion 113782 2.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CC Context Base Substitution 560163 1741.45 25.00 28.94 -3.94 Before
REGRESSION.HCC1395_tumor.L002 CCA Context Base Insertion 179878 2.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCA Context Base Deletion 179878 2.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCC Context Base Insertion 153479 8.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCC Context Base Deletion 153479 8.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCG Context Base Insertion 37758 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCG Context Base Deletion 37758 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCT Context Base Insertion 180819 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCT Context Base Deletion 180819 5.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CG Context Base Substitution 114853 358.48 26.00 29.69 -3.69 Before
REGRESSION.HCC1395_tumor.L002 CGA Context Base Insertion 45123 2.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGA Context Base Deletion 45123 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGC Context Base Insertion 64423 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGC Context Base Deletion 64423 3.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGG Context Base Insertion 77605 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGG Context Base Deletion 77605 3.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGT Context Base Insertion 49935 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGT Context Base Deletion 49935 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CT Context Base Substitution 607231 464.07 31.00 32.34 -1.34 Before
REGRESSION.HCC1395_tumor.L002 CTA Context Base Insertion 59455 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTA Context Base Deletion 59455 4.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTC Context Base Insertion 148885 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTC Context Base Deletion 148885 7.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTG Context Base Insertion 217247 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTG Context Base Deletion 217247 7.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTT Context Base Insertion 149056 3.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTT Context Base Deletion 149056 4.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GA Context Base Substitution 506236 874.21 28.00 29.48 -1.48 Before
REGRESSION.HCC1395_tumor.L002 GAA Context Base Insertion 144885 2.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAA Context Base Deletion 144885 2.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAC Context Base Insertion 84753 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAC Context Base Deletion 84753 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAG Context Base Insertion 153545 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAG Context Base Deletion 153545 2.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAT Context Base Insertion 85612 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAT Context Base Deletion 85612 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GC Context Base Substitution 495844 1199.64 26.00 30.11 -4.11 Before
REGRESSION.HCC1395_tumor.L002 GCA Context Base Insertion 151880 1.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCA Context Base Deletion 151880 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCC Context Base Insertion 148997 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCC Context Base Deletion 148997 6.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCG Context Base Insertion 36240 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCG Context Base Deletion 36240 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCT Context Base Insertion 158514 2.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCT Context Base Deletion 158514 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GG Context Base Substitution 585000 765.35 29.00 31.65 -2.65 Before
REGRESSION.HCC1395_tumor.L002 GGA Context Base Insertion 159126 3.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGA Context Base Deletion 159126 5.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGC Context Base Insertion 147029 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGC Context Base Deletion 147029 3.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGG Context Base Insertion 159542 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGG Context Base Deletion 159542 7.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGT Context Base Insertion 117042 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGT Context Base Deletion 117042 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GT Context Base Substitution 414840 726.51 28.00 31.97 -3.97 Before
REGRESSION.HCC1395_tumor.L002 GTA Context Base Insertion 67414 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTA Context Base Deletion 67414 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTC Context Base Insertion 92190 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTC Context Base Deletion 92190 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTG Context Base Insertion 142190 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTG Context Base Deletion 142190 8.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTT Context Base Insertion 101604 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTT Context Base Deletion 101604 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TA Context Base Substitution 294868 841.97 26.00 29.49 -3.49 Before
REGRESSION.HCC1395_tumor.L002 TAA Context Base Insertion 89874 2.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAA Context Base Deletion 89874 4.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAC Context Base Insertion 60874 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAC Context Base Deletion 60874 4.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAG Context Base Insertion 60920 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAG Context Base Deletion 60920 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAT Context Base Insertion 72859 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAT Context Base Deletion 72859 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TC Context Base Substitution 457094 1110.13 26.00 30.42 -4.42 Before
REGRESSION.HCC1395_tumor.L002 TCA Context Base Insertion 134776 2.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCA Context Base Deletion 134776 4.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCC Context Base Insertion 147568 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCC Context Base Deletion 147568 3.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCG Context Base Insertion 18890 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCG Context Base Deletion 18890 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCT Context Base Insertion 156735 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCT Context Base Deletion 156735 6.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TG Context Base Substitution 597990 468.34 31.00 31.70 -0.70 Before
REGRESSION.HCC1395_tumor.L002 TGA Context Base Insertion 142155 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGA Context Base Deletion 142155 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGC Context Base Insertion 138940 2.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGC Context Base Deletion 138940 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGG Context Base Insertion 176988 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGG Context Base Deletion 176988 4.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGT Context Base Insertion 140634 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGT Context Base Deletion 140634 9.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TT Context Base Substitution 549306 694.25 29.00 32.86 -3.86 Before
REGRESSION.HCC1395_tumor.L002 TTA Context Base Insertion 88881 3.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTA Context Base Deletion 88881 3.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTC Context Base Insertion 131980 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTC Context Base Deletion 131980 5.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTG Context Base Insertion 117016 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTG Context Base Deletion 117016 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTT Context Base Insertion 183769 22.94 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L002 TTT Context Base Deletion 183769 55.79 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L002 -1 Cycle Base Substitution 27294 104.82 24.00 25.87 -1.87 Before
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Substitution 27440 39.72 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Insertion 27440 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Deletion 27440 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Substitution 25347 56.12 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Insertion 25091 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Deletion 25091 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Substitution 25307 43.03 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Insertion 25024 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Deletion 25024 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Substitution 25224 57.73 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Insertion 24960 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Deletion 24960 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Substitution 25169 49.82 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Insertion 24881 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Deletion 24881 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Substitution 25267 49.61 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Insertion 24971 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Deletion 24971 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Substitution 25123 39.89 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Insertion 24864 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Deletion 24864 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Substitution 24974 49.12 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Insertion 24722 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Deletion 24722 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Substitution 24949 45.91 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Insertion 24699 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Deletion 24699 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Substitution 24841 63.65 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Insertion 24598 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Deletion 24598 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Substitution 24775 34.15 30.00 30.25 -0.25 Before
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Insertion 24514 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Deletion 24514 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Substitution 27401 30.38 31.00 31.21 -0.21 Before
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Insertion 27401 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Deletion 27401 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Substitution 24784 57.58 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Insertion 24502 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Deletion 24502 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Substitution 24746 49.91 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Insertion 24483 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Deletion 24483 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Substitution 24628 57.96 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Insertion 24356 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Deletion 24356 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Substitution 24629 53.81 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Insertion 24381 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Deletion 24381 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Substitution 24509 50.03 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Insertion 24260 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Deletion 24260 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Substitution 24421 44.70 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Insertion 24162 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Deletion 24162 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Substitution 24529 49.24 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Insertion 24239 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Deletion 24239 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Substitution 24271 46.64 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Insertion 23965 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Deletion 23965 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Substitution 24266 47.35 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Insertion 23968 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Deletion 23968 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Substitution 24166 59.27 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Insertion 23853 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Deletion 23853 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Substitution 27516 36.41 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Insertion 27516 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Deletion 27516 2.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Substitution 24108 56.32 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Insertion 23833 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Deletion 23833 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Substitution 24068 52.06 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Insertion 23792 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Deletion 23792 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Substitution 24093 45.25 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Insertion 23791 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Deletion 23791 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Substitution 24031 47.86 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Insertion 23730 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Deletion 23730 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Substitution 23868 44.61 28.00 29.71 -1.71 Before
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Insertion 23583 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Deletion 23583 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Substitution 23787 44.74 28.00 29.63 -1.63 Before
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Insertion 23469 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Deletion 23469 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Substitution 23785 59.28 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Insertion 23475 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Deletion 23475 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Substitution 23572 59.44 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Insertion 23272 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Deletion 23272 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Substitution 23584 41.44 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Insertion 23264 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Deletion 23264 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Substitution 23491 45.71 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Insertion 23184 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Deletion 23184 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Substitution 27483 38.26 31.00 32.11 -1.11 Before
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Insertion 27483 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Deletion 27483 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Substitution 23464 42.60 28.00 29.61 -1.61 Before
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Insertion 23164 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Deletion 23164 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Substitution 23418 44.20 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Insertion 23109 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Deletion 23109 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Substitution 23379 54.71 28.00 29.34 -1.34 Before
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Insertion 23059 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Deletion 23059 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Substitution 23207 45.52 28.00 29.57 -1.57 Before
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Insertion 22883 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Deletion 22883 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Substitution 23195 46.19 28.00 29.57 -1.57 Before
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Insertion 22861 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Deletion 22861 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Substitution 23093 57.41 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Insertion 22761 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Deletion 22761 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Substitution 22978 37.98 29.00 29.80 -0.80 Before
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Insertion 22630 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Deletion 22630 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Substitution 22967 42.67 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Insertion 22616 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Deletion 22616 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Substitution 22860 57.96 28.00 29.53 -1.53 Before
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Insertion 22502 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Deletion 22502 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Substitution 22813 48.82 28.00 29.37 -1.37 Before
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Insertion 22429 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Deletion 22429 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Substitution 27462 39.41 30.00 31.40 -1.40 Before
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Insertion 27462 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Deletion 27462 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Substitution 22711 59.00 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Insertion 22309 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Deletion 22309 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Substitution 22771 46.17 28.00 29.56 -1.56 Before
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Insertion 22326 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Deletion 22326 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Substitution 22640 43.77 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Insertion 22146 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Deletion 22146 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Substitution 22439 30.82 29.00 29.97 -0.97 Before
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Insertion 21926 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Deletion 21926 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Substitution 22391 28.37 29.00 29.82 -0.82 Before
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Insertion 21871 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Deletion 21871 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Substitution 22319 45.09 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Insertion 17088 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Deletion 17088 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Substitution 22090 74.54 27.00 29.93 -2.93 Before
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Insertion 16991 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Deletion 16991 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -147 Cycle Base Substitution 22017 253.08 22.00 30.05 -8.05 Before
REGRESSION.HCC1395_tumor.L002 -148 Cycle Base Substitution 21823 891.35 15.00 30.00 -15.00 Before
REGRESSION.HCC1395_tumor.L002 -149 Cycle Base Substitution 13484 804.86 14.00 30.77 -16.77 Before
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Substitution 27453 47.94 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Insertion 27453 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Deletion 27453 2.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -150 Cycle Base Substitution 4766 8.16 30.00 30.52 -0.52 Before
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Substitution 27505 37.64 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Insertion 27505 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Deletion 27505 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Substitution 27491 49.36 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Insertion 27491 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Deletion 27491 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Substitution 27378 55.53 29.00 31.28 -2.28 Before
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Insertion 27378 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Deletion 27378 1.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Substitution 27435 38.60 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Insertion 27435 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Deletion 27435 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -2 Cycle Base Substitution 27645 78.87 27.00 28.35 -1.35 Before
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Substitution 27416 37.87 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Insertion 27416 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Deletion 27416 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Substitution 27361 45.17 30.00 31.96 -1.96 Before
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Insertion 27361 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Deletion 27361 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Substitution 27319 34.73 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Insertion 27319 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Deletion 27319 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Substitution 27425 33.87 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Insertion 27425 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Deletion 27425 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Substitution 27399 37.97 30.00 31.67 -1.67 Before
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Insertion 27399 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Deletion 27399 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Substitution 27373 36.93 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Insertion 27373 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Deletion 27373 1.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Substitution 27360 37.64 30.00 30.11 -0.11 Before
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Insertion 27360 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Deletion 27360 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Substitution 27347 30.05 30.00 30.60 -0.60 Before
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Insertion 27346 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Deletion 27346 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Substitution 27352 44.76 29.00 29.93 -0.93 Before
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Insertion 27351 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Deletion 27351 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Substitution 27395 41.27 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Insertion 27393 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Deletion 27393 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -3 Cycle Base Substitution 27665 75.95 27.00 29.64 -2.64 Before
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Substitution 27356 39.60 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Insertion 27354 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Deletion 27354 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Substitution 27244 46.31 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Insertion 27243 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Deletion 27243 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Substitution 27339 37.93 30.00 30.39 -0.39 Before
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Insertion 27338 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Deletion 27338 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Substitution 27255 44.50 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Insertion 27255 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Deletion 27255 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Substitution 27279 42.54 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Insertion 27278 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Deletion 27278 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Substitution 27257 46.74 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Insertion 27255 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Deletion 27255 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Substitution 27221 37.47 30.00 30.21 -0.21 Before
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Insertion 27220 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Deletion 27220 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Substitution 27224 38.45 30.00 30.15 -0.15 Before
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Insertion 27221 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Deletion 27221 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Substitution 27193 38.91 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Insertion 27190 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Deletion 27190 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Substitution 27238 52.45 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Insertion 27235 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Deletion 27235 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -4 Cycle Base Substitution 27599 78.63 27.00 29.80 -2.80 Before
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Substitution 27243 39.65 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Insertion 27241 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Deletion 27241 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Substitution 27171 37.17 30.00 30.25 -0.25 Before
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Insertion 27170 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Deletion 27170 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Substitution 27128 32.17 30.00 30.26 -0.26 Before
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Insertion 27127 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Deletion 27127 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Substitution 27201 48.63 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Insertion 27198 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Deletion 27198 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Substitution 27064 35.47 30.00 30.48 -0.48 Before
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Insertion 27060 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Deletion 27060 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Substitution 27223 35.54 30.00 30.39 -0.39 Before
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Insertion 27218 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Deletion 27218 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Substitution 27135 35.04 30.00 30.69 -0.69 Before
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Insertion 27128 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Deletion 27128 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Substitution 27109 34.03 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Insertion 27104 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Deletion 27104 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Substitution 27111 31.13 30.00 30.54 -0.54 Before
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Insertion 27102 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Deletion 27102 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Substitution 27183 40.38 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Insertion 27171 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Deletion 27171 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Substitution 27568 59.37 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Insertion 27568 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Deletion 27568 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Substitution 27022 43.75 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Insertion 27001 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Deletion 27001 2.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Substitution 27048 39.36 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Insertion 27023 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Deletion 27023 2.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Substitution 27086 44.84 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Insertion 27059 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Deletion 27059 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Substitution 27039 33.91 30.00 30.54 -0.54 Before
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Insertion 27009 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Deletion 27009 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Substitution 27032 46.68 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Insertion 27006 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Deletion 27006 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Substitution 27157 35.47 30.00 30.62 -0.62 Before
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Insertion 27124 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Deletion 27124 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Substitution 27054 45.11 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Insertion 27022 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Deletion 27022 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Substitution 27027 44.28 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Insertion 26982 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Deletion 26982 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Substitution 27066 40.22 29.00 30.97 -1.97 Before
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Insertion 27010 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Deletion 27010 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Substitution 26992 36.10 30.00 30.58 -0.58 Before
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Insertion 26931 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Deletion 26931 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Substitution 27500 50.09 29.00 30.70 -1.70 Before
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Insertion 27500 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Deletion 27500 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Substitution 26838 40.54 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Insertion 26774 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Deletion 26774 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Substitution 27053 45.20 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Insertion 26986 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Deletion 26986 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Substitution 26932 31.96 30.00 30.71 -0.71 Before
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Insertion 26867 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Deletion 26867 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Substitution 26871 35.47 30.00 30.75 -0.75 Before
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Insertion 26814 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Deletion 26814 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Substitution 26826 34.91 30.00 30.83 -0.83 Before
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Insertion 26755 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Deletion 26755 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Substitution 26705 41.28 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Insertion 26627 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Deletion 26627 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Substitution 26714 43.83 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Insertion 26638 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Deletion 26638 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Substitution 26754 37.50 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Insertion 26661 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Deletion 26661 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Substitution 26695 48.49 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Insertion 26605 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Deletion 26605 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Substitution 26694 36.50 30.00 30.51 -0.51 Before
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Insertion 26606 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Deletion 26606 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Substitution 27519 43.99 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Insertion 27519 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Deletion 27519 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Substitution 26694 44.47 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Insertion 26590 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Deletion 26590 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Substitution 26684 40.97 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Insertion 26573 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Deletion 26573 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Substitution 26693 45.00 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Insertion 26572 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Deletion 26572 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Substitution 26696 48.65 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Insertion 26578 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Deletion 26578 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Substitution 26527 47.03 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Insertion 26407 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Deletion 26407 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Substitution 26561 35.60 30.00 30.34 -0.34 Before
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Insertion 26427 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Deletion 26427 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Substitution 26466 47.38 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Insertion 26341 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Deletion 26341 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Substitution 26454 37.65 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Insertion 26321 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Deletion 26321 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Substitution 26476 45.89 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Insertion 26329 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Deletion 26329 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Substitution 26408 38.03 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Insertion 26257 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Deletion 26257 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Substitution 27396 39.79 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Insertion 27396 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Deletion 27396 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Substitution 26364 47.79 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Insertion 26198 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Deletion 26198 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Substitution 26333 44.30 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Insertion 26161 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Deletion 26161 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Substitution 26407 47.71 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Insertion 26227 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Deletion 26227 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Substitution 26223 44.08 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Insertion 26052 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Deletion 26052 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Substitution 26222 45.21 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Insertion 26049 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Deletion 26049 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Substitution 26172 29.87 30.00 30.18 -0.18 Before
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Insertion 25989 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Deletion 25989 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Substitution 26143 49.59 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Insertion 25962 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Deletion 25962 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Substitution 26177 36.68 30.00 30.49 -0.49 Before
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Insertion 25974 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Deletion 25974 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Substitution 26121 40.00 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Insertion 25910 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Deletion 25910 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Substitution 26037 46.81 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Insertion 25820 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Deletion 25820 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Substitution 27499 33.97 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Insertion 27499 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Deletion 27499 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Substitution 25818 60.74 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Insertion 25606 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Deletion 25606 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Substitution 26016 38.49 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Insertion 25805 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Deletion 25805 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Substitution 25919 61.43 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Insertion 25717 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Deletion 25717 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Substitution 25747 40.12 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Insertion 25533 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Deletion 25533 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Substitution 25770 59.70 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Insertion 25539 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Deletion 25539 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Substitution 25592 50.61 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Insertion 25367 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Deletion 25367 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Substitution 25588 46.28 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Insertion 25358 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Deletion 25358 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Substitution 25485 42.63 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Insertion 25260 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Deletion 25260 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Substitution 25487 49.09 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Insertion 25237 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Deletion 25237 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Substitution 25397 47.10 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Insertion 25147 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Deletion 25147 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 1 Cycle Base Substitution 27043 61.94 27.00 28.43 -1.43 Before
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Substitution 27326 39.12 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Insertion 27326 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Deletion 27326 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Substitution 25156 43.29 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Insertion 24899 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Deletion 24899 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Substitution 25085 47.51 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Insertion 24813 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Deletion 24813 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Substitution 25100 46.71 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Insertion 24846 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Deletion 24846 2.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Substitution 24966 37.99 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Insertion 24684 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Deletion 24684 2.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Substitution 24930 48.71 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Insertion 24647 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Deletion 24647 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Substitution 24855 39.37 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Insertion 24590 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Deletion 24590 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Substitution 24807 40.84 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Insertion 24542 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Deletion 24542 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Substitution 24797 51.08 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Insertion 24552 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Deletion 24552 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Substitution 24644 56.86 29.00 30.00 -1.00 Before
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Insertion 24404 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Deletion 24404 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Substitution 24634 43.73 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Insertion 24368 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Deletion 24368 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Substitution 27346 33.32 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Insertion 27346 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Deletion 27346 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Substitution 24632 45.36 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Insertion 24356 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Deletion 24356 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Substitution 24592 42.62 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Insertion 24327 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Deletion 24327 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Substitution 24403 41.49 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Insertion 24149 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Deletion 24149 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Substitution 24259 34.84 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Insertion 24026 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Deletion 24026 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Substitution 24363 43.12 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Insertion 24110 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Deletion 24110 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Substitution 24242 41.92 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Insertion 23991 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Deletion 23991 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Substitution 24095 51.13 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Insertion 23808 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Deletion 23808 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Substitution 24117 56.50 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Insertion 23820 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Deletion 23820 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Substitution 24109 41.91 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Insertion 23804 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Deletion 23804 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Substitution 24022 40.39 29.00 29.94 -0.94 Before
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Insertion 23725 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Deletion 23725 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Substitution 27317 32.23 31.00 31.03 -0.03 Before
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Insertion 27317 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Deletion 27317 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Substitution 23904 42.22 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Insertion 23623 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Deletion 23623 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Substitution 23869 53.23 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Insertion 23606 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Deletion 23606 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Substitution 23739 39.11 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Insertion 23452 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Deletion 23452 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Substitution 23810 42.78 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Insertion 23533 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Deletion 23533 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Substitution 23745 60.01 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Insertion 23441 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Deletion 23441 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Substitution 23577 52.18 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Insertion 23264 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Deletion 23264 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Substitution 23548 50.71 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Insertion 23261 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Deletion 23261 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Substitution 23491 35.57 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Insertion 23186 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Deletion 23186 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Substitution 23303 49.68 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Insertion 22984 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Deletion 22984 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Substitution 23335 45.19 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Insertion 23027 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Deletion 23027 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Substitution 27316 30.81 31.00 31.02 -0.02 Before
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Insertion 27316 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Deletion 27316 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Substitution 23322 45.99 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Insertion 23037 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Deletion 23037 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Substitution 23225 57.09 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Insertion 22919 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Deletion 22919 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Substitution 23094 55.02 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Insertion 22787 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Deletion 22787 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Substitution 23096 57.03 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Insertion 22771 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Deletion 22771 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Substitution 23091 44.18 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Insertion 22760 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Deletion 22760 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Substitution 22974 40.84 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Insertion 22637 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Deletion 22637 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Substitution 22873 42.57 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Insertion 22546 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Deletion 22546 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Substitution 22809 43.86 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Insertion 22462 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Deletion 22462 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Substitution 22751 54.01 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Insertion 22414 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Deletion 22414 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Substitution 22710 72.68 27.00 29.67 -2.67 Before
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Insertion 22348 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Deletion 22348 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Substitution 27292 33.35 30.00 31.16 -1.16 Before
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Insertion 27292 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Deletion 27292 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Substitution 22541 49.72 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Insertion 22202 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Deletion 22202 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Substitution 22413 46.22 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Insertion 22068 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Deletion 22068 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Substitution 22396 53.59 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Insertion 21993 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Deletion 21993 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Substitution 22277 44.69 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Insertion 21872 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Deletion 21872 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Substitution 22230 47.07 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Insertion 21811 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Deletion 21811 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Substitution 22102 35.92 29.00 29.79 -0.79 Before
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Insertion 21694 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Deletion 21694 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Substitution 21987 46.66 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Insertion 21626 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Deletion 21626 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 147 Cycle Base Substitution 21970 53.21 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L002 148 Cycle Base Substitution 21891 55.13 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L002 149 Cycle Base Substitution 21805 46.23 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Substitution 27269 29.29 31.00 31.61 -0.61 Before
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Insertion 27269 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Deletion 27269 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 150 Cycle Base Substitution 21610 45.45 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Substitution 27148 25.09 32.00 32.92 -0.92 Before
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Insertion 27148 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Deletion 27148 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Substitution 27244 32.08 31.00 32.34 -1.34 Before
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Insertion 27244 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Deletion 27244 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Substitution 27404 20.99 32.00 32.90 -0.90 Before
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Insertion 27404 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Deletion 27404 2.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Substitution 27123 20.75 33.00 33.02 -0.02 Before
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Insertion 27123 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Deletion 27123 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 2 Cycle Base Substitution 27501 55.19 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Substitution 27145 29.04 31.00 32.66 -1.66 Before
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Insertion 27145 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Deletion 27145 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Substitution 27203 21.84 32.00 32.49 -0.49 Before
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Insertion 27203 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Deletion 27203 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Substitution 27179 23.46 32.00 33.24 -1.24 Before
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Insertion 27179 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Deletion 27179 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Substitution 27200 22.78 32.00 32.82 -0.82 Before
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Insertion 27200 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Deletion 27200 2.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Substitution 27144 23.58 32.00 33.19 -1.19 Before
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Insertion 27144 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Deletion 27144 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Substitution 27138 26.45 32.00 32.91 -0.91 Before
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Insertion 27138 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Deletion 27138 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Substitution 27235 29.71 31.00 31.48 -0.48 Before
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Insertion 27235 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Deletion 27235 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Substitution 27172 31.62 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Insertion 27172 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Deletion 27172 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Substitution 27164 32.48 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Insertion 27164 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Deletion 27164 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Substitution 27112 27.94 31.00 31.23 -0.23 Before
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Insertion 27111 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Deletion 27111 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 3 Cycle Base Substitution 27662 61.55 29.00 30.70 -1.70 Before
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Substitution 27142 30.40 31.00 31.55 -0.55 Before
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Insertion 27140 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Deletion 27140 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Substitution 27138 33.28 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Insertion 27137 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Deletion 27137 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Substitution 27177 38.67 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Insertion 27176 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Deletion 27176 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Substitution 27156 34.03 30.00 31.56 -1.56 Before
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Insertion 27154 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Deletion 27154 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Substitution 27117 38.61 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Insertion 27115 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Deletion 27115 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Substitution 27131 35.82 30.00 31.26 -1.26 Before
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Insertion 27129 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Deletion 27129 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Substitution 27003 49.59 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Insertion 27000 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Deletion 27000 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Substitution 27130 29.76 31.00 31.88 -0.88 Before
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Insertion 27128 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Deletion 27128 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Substitution 27069 25.94 31.00 31.57 -0.57 Before
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Insertion 27067 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Deletion 27067 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Substitution 27043 36.43 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Insertion 27041 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Deletion 27041 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 4 Cycle Base Substitution 27440 57.56 29.00 30.93 -1.93 Before
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Substitution 27175 32.24 30.00 31.75 -1.75 Before
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Insertion 27172 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Deletion 27172 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Substitution 26992 38.99 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Insertion 26990 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Deletion 26990 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Substitution 27015 27.29 31.00 31.44 -0.44 Before
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Insertion 27014 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Deletion 27014 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Substitution 26881 33.91 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Insertion 26878 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Deletion 26878 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Substitution 27077 28.43 31.00 31.85 -0.85 Before
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Insertion 27073 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Deletion 27073 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Substitution 27017 33.75 30.00 31.33 -1.33 Before
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Insertion 27011 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Deletion 27011 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Substitution 27106 31.00 31.00 31.18 -0.18 Before
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Insertion 27099 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Deletion 27099 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Substitution 27014 42.04 30.00 31.39 -1.39 Before
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Insertion 27008 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Deletion 27008 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Substitution 26855 26.82 31.00 31.34 -0.34 Before
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Insertion 26845 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Deletion 26845 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Substitution 26876 28.60 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Insertion 26862 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Deletion 26862 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Substitution 27554 48.03 30.00 31.26 -1.26 Before
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Insertion 27554 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Deletion 27554 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Substitution 26926 34.72 30.00 31.79 -1.79 Before
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Insertion 26909 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Deletion 26909 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Substitution 26912 33.77 30.00 31.15 -1.15 Before
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Insertion 26888 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Deletion 26888 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Substitution 26863 32.74 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Insertion 26838 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Deletion 26838 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Substitution 26968 36.92 30.00 31.58 -1.58 Before
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Insertion 26937 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Deletion 26937 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Substitution 26983 39.23 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Insertion 26957 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Deletion 26957 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Substitution 26833 27.95 31.00 31.13 -0.13 Before
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Insertion 26802 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Deletion 26802 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Substitution 26744 38.84 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Insertion 26712 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Deletion 26712 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Substitution 26704 45.01 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Insertion 26662 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Deletion 26662 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Substitution 26829 30.17 31.00 31.21 -0.21 Before
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Insertion 26770 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Deletion 26770 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Substitution 26757 28.95 31.00 31.34 -0.34 Before
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Insertion 26699 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Deletion 26699 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Substitution 27443 30.62 31.00 31.18 -0.18 Before
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Insertion 27443 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Deletion 27443 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Substitution 26788 25.97 31.00 31.33 -0.33 Before
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Insertion 26724 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Deletion 26724 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Substitution 26741 29.12 31.00 31.50 -0.50 Before
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Insertion 26674 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Deletion 26674 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Substitution 26709 27.92 31.00 31.45 -0.45 Before
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Insertion 26639 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Deletion 26639 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Substitution 26719 45.59 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Insertion 26655 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Deletion 26655 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Substitution 26749 38.16 30.00 31.15 -1.15 Before
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Insertion 26680 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Deletion 26680 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Substitution 26673 34.13 30.00 31.48 -1.48 Before
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Insertion 26587 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Deletion 26587 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Substitution 26713 31.79 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Insertion 26634 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Deletion 26634 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Substitution 26662 44.52 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Insertion 26578 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Deletion 26578 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Substitution 26548 42.67 30.00 31.04 -1.04 Before
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Insertion 26457 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Deletion 26457 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Substitution 26542 28.94 31.00 31.25 -0.25 Before
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Insertion 26448 2.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Deletion 26448 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Substitution 27401 37.46 30.00 30.87 -0.87 Before
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Insertion 27401 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Deletion 27401 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Substitution 26595 42.42 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Insertion 26499 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Deletion 26499 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Substitution 26545 40.75 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Insertion 26438 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Deletion 26438 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Substitution 26533 37.10 30.00 31.01 -1.01 Before
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Insertion 26414 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Deletion 26414 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Substitution 26521 44.44 29.00 30.88 -1.88 Before
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Insertion 26404 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Deletion 26404 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Substitution 26443 44.71 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Insertion 26320 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Deletion 26320 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Substitution 26498 30.60 31.00 31.19 -0.19 Before
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Insertion 26360 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Deletion 26360 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Substitution 26353 30.99 31.00 31.09 -0.09 Before
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Insertion 26229 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Deletion 26229 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Substitution 26250 50.13 29.00 30.96 -1.96 Before
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Insertion 26119 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Deletion 26119 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Substitution 26222 38.94 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Insertion 26073 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Deletion 26073 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Substitution 26217 41.96 29.00 30.94 -1.94 Before
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Insertion 26065 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Deletion 26065 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Substitution 27414 23.81 31.00 31.32 -0.32 Before
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Insertion 27414 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Deletion 27414 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Substitution 26133 42.28 29.00 30.89 -1.89 Before
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Insertion 25964 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Deletion 25964 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Substitution 26153 38.32 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Insertion 25970 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Deletion 25970 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Substitution 26084 41.81 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Insertion 25919 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Deletion 25919 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Substitution 26011 34.80 30.00 30.83 -0.83 Before
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Insertion 25841 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Deletion 25841 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Substitution 26063 39.30 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Insertion 25905 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Deletion 25905 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Substitution 25968 40.84 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Insertion 25788 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Deletion 25788 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Substitution 25937 47.22 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Insertion 25758 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Deletion 25758 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Substitution 26008 41.81 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Insertion 25815 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Deletion 25815 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Substitution 25852 27.95 30.00 30.75 -0.75 Before
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Insertion 25642 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Deletion 25642 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Substitution 25761 36.39 30.00 30.68 -0.68 Before
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Insertion 25550 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Deletion 25550 1.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Substitution 27283 29.66 31.00 31.15 -0.15 Before
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Insertion 27283 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Deletion 27283 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Substitution 25730 37.47 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Insertion 25516 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Deletion 25516 2.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Substitution 25586 45.88 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Insertion 25382 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Deletion 25382 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Substitution 25615 42.54 29.00 30.75 -1.75 Before
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Insertion 25412 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Deletion 25412 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Substitution 25617 42.99 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Insertion 25396 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Deletion 25396 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Substitution 25528 49.82 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Insertion 25303 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Deletion 25303 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Substitution 25508 34.22 30.00 30.64 -0.64 Before
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Insertion 25292 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Deletion 25292 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Substitution 25455 39.82 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Insertion 25216 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Deletion 25216 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Substitution 25367 37.56 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Insertion 25143 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Deletion 25143 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Substitution 25261 34.65 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Insertion 25016 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Deletion 25016 2.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Substitution 25187 37.91 29.00 30.94 -1.94 Before
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Insertion 24940 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Deletion 24940 2.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 12 QualityScore Base Substitution 83548 8177.83 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L002 24 QualityScore Base Substitution 201811 784.66 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 40 QualityScore Base Substitution 7411222 5563.74 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L002 45 QualityScore Base Insertion 7696581 157.44 46.00 45.00 1.00 Before
REGRESSION.HCC1395_tumor.L002 45 QualityScore Base Deletion 7696581 355.01 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L003 AA Context Base Substitution 521547 1382.23 26.00 29.62 -3.62 Before
REGRESSION.HCC1395_tumor.L003 AAA Context Base Insertion 176233 22.61 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L003 AAA Context Base Deletion 176233 67.49 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L003 AAC Context Base Insertion 85139 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AAC Context Base Deletion 85139 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AAG Context Base Insertion 134802 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AAG Context Base Deletion 134802 4.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AAT Context Base Insertion 100040 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AAT Context Base Deletion 100040 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AC Context Base Substitution 358352 1112.34 25.00 28.73 -3.73 Before
REGRESSION.HCC1395_tumor.L003 ACA Context Base Insertion 132610 2.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACA Context Base Deletion 132610 6.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACC Context Base Insertion 105168 3.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACC Context Base Deletion 105168 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACG Context Base Insertion 20951 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACG Context Base Deletion 20951 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACT Context Base Insertion 105167 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACT Context Base Deletion 105167 4.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AG Context Base Substitution 563565 554.52 30.00 31.76 -1.76 Before
REGRESSION.HCC1395_tumor.L003 AGA Context Base Insertion 152018 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGA Context Base Deletion 152018 5.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGC Context Base Insertion 140858 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGC Context Base Deletion 140858 3.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGG Context Base Insertion 164535 7.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGG Context Base Deletion 164535 4.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGT Context Base Insertion 102666 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGT Context Base Deletion 102666 3.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AT Context Base Substitution 368868 489.04 29.00 32.05 -3.05 Before
REGRESSION.HCC1395_tumor.L003 ATA Context Base Insertion 74544 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATA Context Base Deletion 74544 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATC Context Base Insertion 79378 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATC Context Base Deletion 79378 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATG Context Base Insertion 114698 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATG Context Base Deletion 114698 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATT Context Base Insertion 107694 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATT Context Base Deletion 107694 2.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CA Context Base Substitution 595069 1295.32 27.00 29.94 -2.94 Before
REGRESSION.HCC1395_tumor.L003 CAA Context Base Insertion 111925 3.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAA Context Base Deletion 111925 3.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAC Context Base Insertion 125987 4.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAC Context Base Deletion 125987 7.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAG Context Base Insertion 214053 5.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAG Context Base Deletion 214053 10.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAT Context Base Insertion 111810 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAT Context Base Deletion 111810 2.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CC Context Base Substitution 555975 1765.44 25.00 28.86 -3.86 Before
REGRESSION.HCC1395_tumor.L003 CCA Context Base Insertion 177031 4.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCA Context Base Deletion 177031 2.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCC Context Base Insertion 153144 5.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCC Context Base Deletion 153144 8.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCG Context Base Insertion 38097 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCG Context Base Deletion 38097 2.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCT Context Base Insertion 179027 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCT Context Base Deletion 179027 6.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CG Context Base Substitution 115365 359.08 26.00 29.58 -3.58 Before
REGRESSION.HCC1395_tumor.L003 CGA Context Base Insertion 44819 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGA Context Base Deletion 44819 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGC Context Base Insertion 64055 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGC Context Base Deletion 64055 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGG Context Base Insertion 78545 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGG Context Base Deletion 78545 4.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGT Context Base Insertion 49264 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGT Context Base Deletion 49264 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CT Context Base Substitution 599878 421.63 32.00 32.45 -0.45 Before
REGRESSION.HCC1395_tumor.L003 CTA Context Base Insertion 58893 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTA Context Base Deletion 58893 3.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTC Context Base Insertion 147129 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTC Context Base Deletion 147129 8.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTG Context Base Insertion 214565 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTG Context Base Deletion 214565 6.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTT Context Base Insertion 147109 4.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTT Context Base Deletion 147109 4.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GA Context Base Substitution 496231 857.51 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L003 GAA Context Base Insertion 141392 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAA Context Base Deletion 141392 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAC Context Base Insertion 84300 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAC Context Base Deletion 84300 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAG Context Base Insertion 149945 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAG Context Base Deletion 149945 3.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAT Context Base Insertion 83871 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAT Context Base Deletion 83871 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GC Context Base Substitution 491226 1099.33 27.00 30.15 -3.15 Before
REGRESSION.HCC1395_tumor.L003 GCA Context Base Insertion 148454 2.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCA Context Base Deletion 148454 4.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCC Context Base Insertion 147763 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCC Context Base Deletion 147763 5.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCG Context Base Insertion 36547 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCG Context Base Deletion 36547 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCT Context Base Insertion 156845 3.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCT Context Base Deletion 156845 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GG Context Base Substitution 580746 818.42 29.00 31.63 -2.63 Before
REGRESSION.HCC1395_tumor.L003 GGA Context Base Insertion 156828 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGA Context Base Deletion 156828 6.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGC Context Base Insertion 146494 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGC Context Base Deletion 146494 6.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGG Context Base Insertion 159350 4.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGG Context Base Deletion 159350 12.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGT Context Base Insertion 115726 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGT Context Base Deletion 115726 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GT Context Base Substitution 409394 754.22 28.00 32.01 -4.01 Before
REGRESSION.HCC1395_tumor.L003 GTA Context Base Insertion 66845 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTA Context Base Deletion 66845 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTC Context Base Insertion 91522 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTC Context Base Deletion 91522 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTG Context Base Insertion 140353 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTG Context Base Deletion 140353 7.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTT Context Base Insertion 99742 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTT Context Base Deletion 99742 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TA Context Base Substitution 289155 813.83 26.00 29.77 -3.77 Before
REGRESSION.HCC1395_tumor.L003 TAA Context Base Insertion 87445 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAA Context Base Deletion 87445 3.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAC Context Base Insertion 60605 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAC Context Base Deletion 60605 3.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAG Context Base Insertion 60429 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAG Context Base Deletion 60429 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAT Context Base Insertion 70368 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAT Context Base Deletion 70368 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TC Context Base Substitution 450911 1080.67 26.00 30.45 -4.45 Before
REGRESSION.HCC1395_tumor.L003 TCA Context Base Insertion 132310 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCA Context Base Deletion 132310 5.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCC Context Base Insertion 146096 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCC Context Base Deletion 146096 5.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCG Context Base Insertion 18855 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCG Context Base Deletion 18855 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCT Context Base Insertion 154721 2.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCT Context Base Deletion 154721 5.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TG Context Base Substitution 588168 477.14 31.00 31.83 -0.83 Before
REGRESSION.HCC1395_tumor.L003 TGA Context Base Insertion 138719 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGA Context Base Deletion 138719 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGC Context Base Insertion 136626 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGC Context Base Deletion 136626 2.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGG Context Base Insertion 174129 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGG Context Base Deletion 174129 3.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGT Context Base Insertion 138994 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGT Context Base Deletion 138994 6.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TT Context Base Substitution 538355 704.42 29.00 32.80 -3.80 Before
REGRESSION.HCC1395_tumor.L003 TTA Context Base Insertion 86667 2.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTA Context Base Deletion 86667 3.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTC Context Base Insertion 130145 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTC Context Base Deletion 130145 7.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTG Context Base Insertion 114357 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTG Context Base Deletion 114357 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTT Context Base Insertion 180123 26.91 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L003 TTT Context Base Deletion 180123 47.88 43.00 45.00 -2.00 Before
REGRESSION.HCC1395_tumor.L003 -1 Cycle Base Substitution 26669 78.81 25.00 25.88 -0.88 Before
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Substitution 26883 34.40 30.00 31.52 -1.52 Before
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Insertion 26883 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Deletion 26883 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Substitution 24855 56.20 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Insertion 24615 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Deletion 24615 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Substitution 24836 53.72 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Insertion 24585 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Deletion 24585 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Substitution 24700 52.65 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Insertion 24456 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Deletion 24456 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Substitution 24705 40.94 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Insertion 24454 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Deletion 24454 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Substitution 24613 45.65 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Insertion 24372 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Deletion 24372 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Substitution 24536 54.95 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Insertion 24280 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Deletion 24280 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Substitution 24457 51.56 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Insertion 24211 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Deletion 24211 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Substitution 24448 49.21 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Insertion 24198 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Deletion 24198 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Substitution 24413 48.35 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Insertion 24146 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Deletion 24146 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Substitution 24386 57.07 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Insertion 24113 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Deletion 24113 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Substitution 26961 28.26 31.00 31.86 -0.86 Before
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Insertion 26961 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Deletion 26961 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Substitution 24314 58.60 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Insertion 24043 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Deletion 24043 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Substitution 24197 55.40 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Insertion 23921 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Deletion 23921 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Substitution 24146 51.59 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Insertion 23873 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Deletion 23873 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Substitution 24124 52.09 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Insertion 23855 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Deletion 23855 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Substitution 24034 51.48 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Insertion 23773 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Deletion 23773 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Substitution 23880 50.84 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Insertion 23606 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Deletion 23606 2.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Substitution 23960 62.81 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Insertion 23698 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Deletion 23698 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Substitution 23745 55.69 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Insertion 23468 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Deletion 23468 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Substitution 23630 42.78 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Insertion 23341 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Deletion 23341 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Substitution 23653 47.61 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Insertion 23373 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Deletion 23373 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Substitution 26993 43.78 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Insertion 26993 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Deletion 26993 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Substitution 23640 51.04 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Insertion 23365 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Deletion 23365 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Substitution 23631 49.58 28.00 29.67 -1.67 Before
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Insertion 23335 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Deletion 23335 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Substitution 23517 57.70 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Insertion 23232 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Deletion 23232 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Substitution 23357 36.42 29.00 29.61 -0.61 Before
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Insertion 23057 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Deletion 23057 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Substitution 23258 55.39 28.00 29.48 -1.48 Before
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Insertion 22949 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Deletion 22949 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Substitution 23352 45.07 28.00 29.52 -1.52 Before
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Insertion 23029 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Deletion 23029 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Substitution 23295 50.09 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Insertion 22968 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Deletion 22968 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Substitution 23245 37.42 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Insertion 22921 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Deletion 22921 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Substitution 23133 54.04 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Insertion 22825 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Deletion 22825 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Substitution 23059 47.51 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Insertion 22743 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Deletion 22743 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Substitution 26981 36.75 30.00 31.89 -1.89 Before
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Insertion 26981 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Deletion 26981 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Substitution 23050 42.01 28.00 29.71 -1.71 Before
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Insertion 22740 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Deletion 22740 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Substitution 22910 42.22 28.00 29.32 -1.32 Before
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Insertion 22604 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Deletion 22604 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Substitution 22939 38.06 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Insertion 22606 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Deletion 22606 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Substitution 22810 52.81 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Insertion 22463 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Deletion 22463 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Substitution 22679 37.44 29.00 30.00 -1.00 Before
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Insertion 22336 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Deletion 22336 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Substitution 22685 57.16 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Insertion 22352 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Deletion 22352 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Substitution 22626 52.39 28.00 29.59 -1.59 Before
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Insertion 22259 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Deletion 22259 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Substitution 22553 52.89 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Insertion 22183 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Deletion 22183 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Substitution 22465 52.01 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Insertion 22088 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Deletion 22088 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Substitution 22285 42.58 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Insertion 21894 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Deletion 21894 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Substitution 26952 32.04 30.00 31.84 -1.84 Before
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Insertion 26952 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Deletion 26952 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Substitution 22178 41.85 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Insertion 21802 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Deletion 21802 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Substitution 22125 36.65 29.00 29.98 -0.98 Before
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Insertion 21721 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Deletion 21721 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Substitution 22112 33.78 29.00 29.83 -0.83 Before
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Insertion 21677 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Deletion 21677 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Substitution 22073 34.57 29.00 29.87 -0.87 Before
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Insertion 21622 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Deletion 21622 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Substitution 21811 36.24 29.00 29.96 -0.96 Before
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Insertion 21323 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Deletion 21323 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Substitution 21699 40.95 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Insertion 16676 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Deletion 16676 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Substitution 21601 74.38 27.00 29.87 -2.87 Before
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Insertion 16623 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Deletion 16623 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -147 Cycle Base Substitution 21500 232.58 23.00 30.19 -7.19 Before
REGRESSION.HCC1395_tumor.L003 -148 Cycle Base Substitution 21353 880.94 15.00 29.92 -14.92 Before
REGRESSION.HCC1395_tumor.L003 -149 Cycle Base Substitution 13230 810.04 14.00 30.84 -16.84 Before
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Substitution 27071 35.14 30.00 31.72 -1.72 Before
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Insertion 27071 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Deletion 27071 2.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -150 Cycle Base Substitution 4625 8.75 30.00 30.14 -0.14 Before
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Substitution 26983 42.75 30.00 31.52 -1.52 Before
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Insertion 26983 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Deletion 26983 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Substitution 27067 41.21 30.00 31.76 -1.76 Before
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Insertion 27067 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Deletion 27067 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Substitution 26944 44.44 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Insertion 26944 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Deletion 26944 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Substitution 26914 43.15 30.00 31.36 -1.36 Before
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Insertion 26914 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Deletion 26914 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -2 Cycle Base Substitution 27166 71.07 27.00 28.49 -1.49 Before
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Substitution 26963 31.90 30.00 31.74 -1.74 Before
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Insertion 26963 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Deletion 26963 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Substitution 26918 23.79 32.00 32.08 -0.08 Before
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Insertion 26918 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Deletion 26918 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Substitution 26916 35.55 30.00 31.88 -1.88 Before
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Insertion 26916 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Deletion 26916 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Substitution 26975 28.11 31.00 31.78 -0.78 Before
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Insertion 26975 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Deletion 26975 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Substitution 27012 35.22 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Insertion 27012 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Deletion 27012 1.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Substitution 26976 34.86 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Insertion 26976 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Deletion 26976 2.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Substitution 26811 40.79 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Insertion 26811 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Deletion 26811 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Substitution 26807 34.88 30.00 30.04 -0.04 Before
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Insertion 26807 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Deletion 26807 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Substitution 26825 56.64 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Insertion 26825 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Deletion 26825 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Substitution 26783 40.81 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Insertion 26783 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Deletion 26783 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -3 Cycle Base Substitution 27158 69.20 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Substitution 26821 38.38 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Insertion 26819 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Deletion 26819 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Substitution 26838 35.74 30.00 30.38 -0.38 Before
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Insertion 26836 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Deletion 26836 2.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Substitution 26958 33.21 30.00 30.28 -0.28 Before
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Insertion 26955 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Deletion 26955 2.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Substitution 26795 34.89 30.00 30.78 -0.78 Before
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Insertion 26793 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Deletion 26793 2.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Substitution 26756 30.29 30.00 30.34 -0.34 Before
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Insertion 26755 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Deletion 26755 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Substitution 26805 35.81 30.00 30.65 -0.65 Before
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Insertion 26805 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Deletion 26805 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Substitution 26821 39.16 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Insertion 26821 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Deletion 26821 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Substitution 26688 50.30 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Insertion 26688 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Deletion 26688 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Substitution 26763 42.85 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Insertion 26763 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Deletion 26763 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Substitution 26752 32.92 30.00 30.24 -0.24 Before
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Insertion 26750 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Deletion 26750 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -4 Cycle Base Substitution 27044 70.54 28.00 30.12 -2.12 Before
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Substitution 26838 49.03 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Insertion 26836 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Deletion 26836 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Substitution 26598 43.40 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Insertion 26597 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Deletion 26597 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Substitution 26572 25.20 30.00 30.29 -0.29 Before
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Insertion 26570 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Deletion 26570 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Substitution 26732 36.65 30.00 30.64 -0.64 Before
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Insertion 26729 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Deletion 26729 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Substitution 26652 30.40 30.00 30.17 -0.17 Before
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Insertion 26650 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Deletion 26650 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Substitution 26817 30.90 30.00 30.68 -0.68 Before
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Insertion 26814 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Deletion 26814 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Substitution 26613 35.25 30.00 30.79 -0.79 Before
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Insertion 26611 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Deletion 26611 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Substitution 26696 44.58 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Insertion 26694 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Deletion 26694 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Substitution 26651 32.39 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Insertion 26648 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Deletion 26648 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Substitution 26634 46.52 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Insertion 26626 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Deletion 26626 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Substitution 27132 48.92 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Insertion 27132 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Deletion 27132 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Substitution 26651 32.22 30.00 30.76 -0.76 Before
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Insertion 26645 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Deletion 26645 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Substitution 26583 38.37 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Insertion 26571 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Deletion 26571 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Substitution 26553 28.55 30.00 30.62 -0.62 Before
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Insertion 26539 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Deletion 26539 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Substitution 26459 31.93 30.00 30.63 -0.63 Before
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Insertion 26440 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Deletion 26440 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Substitution 26521 42.66 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Insertion 26497 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Deletion 26497 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Substitution 26552 42.75 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Insertion 26523 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Deletion 26523 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Substitution 26450 37.18 30.00 30.33 -0.33 Before
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Insertion 26418 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Deletion 26418 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Substitution 26501 33.04 30.00 30.78 -0.78 Before
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Insertion 26463 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Deletion 26463 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Substitution 26485 34.26 30.00 30.92 -0.92 Before
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Insertion 26443 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Deletion 26443 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Substitution 26592 39.19 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Insertion 26543 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Deletion 26543 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Substitution 26976 49.86 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Insertion 26976 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Deletion 26976 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Substitution 26536 44.22 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Insertion 26487 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Deletion 26487 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Substitution 26266 31.85 30.00 30.64 -0.64 Before
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Insertion 26214 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Deletion 26214 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Substitution 26323 33.96 30.00 30.99 -0.99 Before
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Insertion 26268 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Deletion 26268 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Substitution 26439 43.66 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Insertion 26374 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Deletion 26374 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Substitution 26477 42.90 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Insertion 26406 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Deletion 26406 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Substitution 26466 31.27 30.00 30.95 -0.95 Before
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Insertion 26378 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Deletion 26378 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Substitution 26558 44.57 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Insertion 26469 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Deletion 26469 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Substitution 26298 37.12 30.00 30.52 -0.52 Before
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Insertion 26218 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Deletion 26218 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Substitution 26390 41.73 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Insertion 26297 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Deletion 26297 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Substitution 26318 38.86 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Insertion 26219 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Deletion 26219 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Substitution 26939 48.04 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Insertion 26939 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Deletion 26939 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Substitution 26398 41.71 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Insertion 26300 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Deletion 26300 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Substitution 26334 44.90 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Insertion 26212 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Deletion 26212 1.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Substitution 26175 42.27 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Insertion 26048 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Deletion 26048 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Substitution 26148 33.65 30.00 30.51 -0.51 Before
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Insertion 26018 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Deletion 26018 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Substitution 26206 33.45 30.00 30.22 -0.22 Before
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Insertion 26070 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Deletion 26070 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Substitution 26174 37.20 30.00 30.46 -0.46 Before
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Insertion 26039 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Deletion 26039 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Substitution 26139 42.51 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Insertion 25996 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Deletion 25996 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Substitution 26059 40.86 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Insertion 25913 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Deletion 25913 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Substitution 25965 44.02 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Insertion 25816 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Deletion 25816 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Substitution 25940 48.43 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Insertion 25785 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Deletion 25785 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Substitution 27039 43.31 29.00 30.94 -1.94 Before
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Insertion 27039 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Deletion 27039 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Substitution 25904 42.80 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Insertion 25749 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Deletion 25749 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Substitution 25940 41.85 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Insertion 25777 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Deletion 25777 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Substitution 25859 47.55 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Insertion 25681 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Deletion 25681 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Substitution 25767 45.31 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Insertion 25573 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Deletion 25573 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Substitution 25783 48.15 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Insertion 25591 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Deletion 25591 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Substitution 25743 50.43 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Insertion 25565 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Deletion 25565 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Substitution 25493 57.64 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Insertion 25314 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Deletion 25314 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Substitution 25704 44.35 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Insertion 25508 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Deletion 25508 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Substitution 25642 44.95 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Insertion 25443 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Deletion 25443 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Substitution 25558 52.39 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Insertion 25353 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Deletion 25353 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Substitution 27021 43.04 30.00 31.16 -1.16 Before
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Insertion 27021 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Deletion 27021 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Substitution 25497 38.58 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Insertion 25290 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Deletion 25290 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Substitution 25382 42.93 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Insertion 25176 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Deletion 25176 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Substitution 25288 42.65 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Insertion 25062 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Deletion 25062 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Substitution 25298 59.84 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Insertion 25084 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Deletion 25084 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Substitution 25158 37.43 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Insertion 24942 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Deletion 24942 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Substitution 25171 37.64 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Insertion 24950 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Deletion 24950 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Substitution 25126 57.66 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Insertion 24891 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Deletion 24891 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Substitution 24989 44.74 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Insertion 24728 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Deletion 24728 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Substitution 25116 46.02 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Insertion 24860 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Deletion 24860 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Substitution 24880 45.00 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Insertion 24634 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Deletion 24634 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 1 Cycle Base Substitution 26700 61.99 27.00 28.66 -1.66 Before
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Substitution 26948 38.16 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Insertion 26948 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Deletion 26948 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Substitution 24766 45.97 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Insertion 24519 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Deletion 24519 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Substitution 24857 45.99 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Insertion 24614 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Deletion 24614 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Substitution 24846 44.14 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Insertion 24589 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Deletion 24589 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Substitution 24647 36.25 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Insertion 24394 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Deletion 24394 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Substitution 24758 40.33 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Insertion 24507 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Deletion 24507 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Substitution 24611 41.23 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Insertion 24362 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Deletion 24362 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Substitution 24464 44.46 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Insertion 24206 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Deletion 24206 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Substitution 24510 51.58 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Insertion 24254 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Deletion 24254 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Substitution 24349 41.32 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Insertion 24068 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Deletion 24068 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Substitution 24438 40.94 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Insertion 24161 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Deletion 24161 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Substitution 26917 35.49 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Insertion 26917 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Deletion 26917 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Substitution 24251 55.01 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Insertion 23971 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Deletion 23971 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Substitution 24186 47.00 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Insertion 23898 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Deletion 23898 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Substitution 24073 51.88 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Insertion 23804 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Deletion 23804 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Substitution 24178 43.96 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Insertion 23918 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Deletion 23918 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Substitution 24005 47.19 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Insertion 23750 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Deletion 23750 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Substitution 24003 51.97 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Insertion 23733 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Deletion 23733 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Substitution 23927 47.83 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Insertion 23659 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Deletion 23659 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Substitution 23944 49.26 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Insertion 23661 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Deletion 23661 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Substitution 23757 35.36 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Insertion 23475 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Deletion 23475 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Substitution 23726 37.94 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Insertion 23430 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Deletion 23430 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Substitution 26885 29.84 31.00 31.68 -0.68 Before
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Insertion 26885 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Deletion 26885 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Substitution 23675 42.96 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Insertion 23390 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Deletion 23390 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Substitution 23585 49.34 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Insertion 23294 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Deletion 23294 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Substitution 23621 38.71 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Insertion 23333 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Deletion 23333 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Substitution 23486 35.94 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Insertion 23195 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Deletion 23195 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Substitution 23431 49.43 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Insertion 23115 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Deletion 23115 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Substitution 23283 39.22 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Insertion 22976 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Deletion 22976 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Substitution 23365 50.22 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Insertion 23042 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Deletion 23042 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Substitution 23283 39.69 29.00 29.95 -0.95 Before
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Insertion 22963 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Deletion 22963 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Substitution 23158 51.69 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Insertion 22854 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Deletion 22854 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Substitution 23053 53.41 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Insertion 22757 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Deletion 22757 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Substitution 26893 22.73 31.00 31.33 -0.33 Before
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Insertion 26893 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Deletion 26893 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Substitution 22995 38.78 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Insertion 22685 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Deletion 22685 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Substitution 22831 46.59 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Insertion 22521 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Deletion 22521 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Substitution 22977 36.68 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Insertion 22665 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Deletion 22665 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Substitution 22747 50.20 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Insertion 22414 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Deletion 22414 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Substitution 22728 52.50 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Insertion 22386 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Deletion 22386 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Substitution 22568 44.39 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Insertion 22221 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Deletion 22221 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Substitution 22589 41.33 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Insertion 22241 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Deletion 22241 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Substitution 22465 36.40 29.00 29.75 -0.75 Before
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Insertion 22103 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Deletion 22103 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Substitution 22473 41.11 29.00 30.00 -1.00 Before
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Insertion 22125 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Deletion 22125 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Substitution 22324 48.48 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Insertion 21987 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Deletion 21987 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Substitution 26863 26.67 31.00 31.61 -0.61 Before
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Insertion 26863 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Deletion 26863 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Substitution 22258 52.07 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Insertion 21933 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Deletion 21933 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Substitution 22184 41.69 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Insertion 21858 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Deletion 21858 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Substitution 22106 43.73 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Insertion 21742 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Deletion 21742 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Substitution 22056 50.16 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Insertion 21700 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Deletion 21700 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Substitution 22021 37.87 29.00 29.89 -0.89 Before
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Insertion 21651 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Deletion 21651 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Substitution 21820 41.87 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Insertion 21462 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Deletion 21462 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Substitution 21737 51.89 28.00 29.51 -1.51 Before
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Insertion 21395 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Deletion 21395 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 147 Cycle Base Substitution 21698 54.38 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L003 148 Cycle Base Substitution 21615 46.64 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L003 149 Cycle Base Substitution 21460 51.16 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Substitution 27040 30.30 31.00 31.61 -0.61 Before
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Insertion 27040 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Deletion 27040 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 150 Cycle Base Substitution 21544 40.73 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Substitution 26988 26.12 32.00 32.80 -0.80 Before
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Insertion 26988 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Deletion 26988 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Substitution 26956 28.01 32.00 33.10 -1.10 Before
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Insertion 26956 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Deletion 26956 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Substitution 26968 20.06 33.00 33.04 -0.04 Before
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Insertion 26968 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Deletion 26968 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Substitution 26865 22.78 32.00 32.62 -0.62 Before
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Insertion 26865 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Deletion 26865 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 2 Cycle Base Substitution 27119 49.75 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Substitution 26840 16.41 32.00 33.00 -1.00 Before
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Insertion 26840 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Deletion 26840 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Substitution 26810 26.85 32.00 33.34 -1.34 Before
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Insertion 26810 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Deletion 26810 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Substitution 26802 22.74 32.00 32.57 -0.57 Before
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Insertion 26802 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Deletion 26802 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Substitution 26884 17.45 33.00 33.16 -0.16 Before
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Insertion 26884 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Deletion 26884 2.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Substitution 26751 22.78 32.00 32.63 -0.63 Before
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Insertion 26751 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Deletion 26751 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Substitution 26751 23.07 32.00 32.51 -0.51 Before
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Insertion 26751 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Deletion 26751 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Substitution 26738 32.24 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Insertion 26738 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Deletion 26738 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Substitution 26582 31.24 31.00 31.24 -0.24 Before
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Insertion 26582 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Deletion 26582 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Substitution 26647 33.90 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Insertion 26647 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Deletion 26647 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Substitution 26860 22.31 31.00 31.76 -0.76 Before
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Insertion 26859 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Deletion 26859 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 3 Cycle Base Substitution 27057 50.36 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Substitution 26803 37.68 30.00 31.69 -1.69 Before
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Insertion 26800 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Deletion 26800 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Substitution 26814 32.95 30.00 31.48 -1.48 Before
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Insertion 26810 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Deletion 26810 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Substitution 26823 38.60 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Insertion 26819 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Deletion 26819 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Substitution 26734 27.29 31.00 31.72 -0.72 Before
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Insertion 26732 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Deletion 26732 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Substitution 26663 33.23 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Insertion 26662 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Deletion 26662 2.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Substitution 26781 35.30 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Insertion 26781 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Deletion 26781 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Substitution 26667 38.71 30.00 31.94 -1.94 Before
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Insertion 26666 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Deletion 26666 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Substitution 26638 29.88 31.00 31.54 -0.54 Before
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Insertion 26636 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Deletion 26636 1.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Substitution 26653 36.64 30.00 31.40 -1.40 Before
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Insertion 26652 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Deletion 26652 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Substitution 26694 33.10 30.00 30.93 -0.93 Before
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Insertion 26693 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Deletion 26693 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 4 Cycle Base Substitution 27000 66.20 28.00 30.70 -2.70 Before
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Substitution 26601 25.96 31.00 31.54 -0.54 Before
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Insertion 26600 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Deletion 26600 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Substitution 26624 33.48 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Insertion 26624 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Deletion 26624 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Substitution 26600 23.46 31.00 31.59 -0.59 Before
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Insertion 26599 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Deletion 26599 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Substitution 26698 34.22 30.00 31.36 -1.36 Before
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Insertion 26696 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Deletion 26696 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Substitution 26695 35.28 30.00 31.81 -1.81 Before
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Insertion 26693 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Deletion 26693 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Substitution 26633 27.33 31.00 31.35 -0.35 Before
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Insertion 26630 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Deletion 26630 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Substitution 26619 23.88 31.00 31.90 -0.90 Before
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Insertion 26615 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Deletion 26615 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Substitution 26656 30.96 31.00 31.17 -0.17 Before
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Insertion 26653 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Deletion 26653 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Substitution 26577 30.76 31.00 31.24 -0.24 Before
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Insertion 26573 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Deletion 26573 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Substitution 26654 23.63 31.00 31.15 -0.15 Before
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Insertion 26647 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Deletion 26647 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Substitution 27078 48.35 30.00 31.12 -1.12 Before
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Insertion 27078 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Deletion 27078 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Substitution 26586 27.01 31.00 31.39 -0.39 Before
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Insertion 26579 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Deletion 26579 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Substitution 26523 39.02 30.00 31.40 -1.40 Before
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Insertion 26514 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Deletion 26514 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Substitution 26651 36.86 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Insertion 26639 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Deletion 26639 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Substitution 26542 30.99 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Insertion 26523 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Deletion 26523 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Substitution 26470 30.64 31.00 31.77 -0.77 Before
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Insertion 26443 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Deletion 26443 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Substitution 26532 27.90 31.00 31.59 -0.59 Before
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Insertion 26501 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Deletion 26501 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Substitution 26501 36.95 30.00 31.27 -1.27 Before
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Insertion 26469 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Deletion 26469 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Substitution 26511 36.96 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Insertion 26464 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Deletion 26464 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Substitution 26451 31.97 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Insertion 26398 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Deletion 26398 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Substitution 26446 34.19 30.00 31.21 -1.21 Before
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Insertion 26393 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Deletion 26393 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Substitution 26925 34.70 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Insertion 26925 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Deletion 26925 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Substitution 26477 34.84 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Insertion 26425 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Deletion 26425 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Substitution 26327 31.77 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Insertion 26273 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Deletion 26273 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Substitution 26375 44.36 29.00 30.99 -1.99 Before
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Insertion 26319 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Deletion 26319 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Substitution 26407 32.87 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Insertion 26349 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Deletion 26349 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Substitution 26361 30.58 31.00 31.57 -0.57 Before
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Insertion 26283 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Deletion 26283 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Substitution 26406 40.29 30.00 31.48 -1.48 Before
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Insertion 26325 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Deletion 26325 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Substitution 26378 25.59 31.00 31.54 -0.54 Before
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Insertion 26291 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Deletion 26291 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Substitution 26400 28.32 31.00 31.44 -0.44 Before
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Insertion 26315 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Deletion 26315 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Substitution 26201 39.64 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Insertion 26112 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Deletion 26112 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Substitution 26177 34.04 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Insertion 26084 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Deletion 26084 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Substitution 26900 41.45 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Insertion 26900 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Deletion 26900 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Substitution 26302 50.26 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Insertion 26205 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Deletion 26205 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Substitution 26246 31.21 30.00 30.85 -0.85 Before
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Insertion 26131 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Deletion 26131 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Substitution 26204 39.29 29.00 30.95 -1.95 Before
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Insertion 26084 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Deletion 26084 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Substitution 26110 42.66 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Insertion 25984 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Deletion 25984 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Substitution 26118 39.55 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Insertion 25984 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Deletion 25984 2.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Substitution 26100 45.92 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Insertion 25965 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Deletion 25965 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Substitution 26044 46.30 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Insertion 25905 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Deletion 25905 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Substitution 25920 51.98 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Insertion 25772 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Deletion 25772 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Substitution 25946 42.11 30.00 31.03 -1.03 Before
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Insertion 25798 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Deletion 25798 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Substitution 25842 40.47 29.00 30.88 -1.88 Before
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Insertion 25687 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Deletion 25687 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Substitution 27028 36.17 30.00 30.93 -0.93 Before
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Insertion 27028 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Deletion 27028 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Substitution 25876 38.19 29.00 30.96 -1.96 Before
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Insertion 25715 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Deletion 25715 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Substitution 25823 36.56 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Insertion 25659 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Deletion 25659 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Substitution 25725 41.41 29.00 30.73 -1.73 Before
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Insertion 25560 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Deletion 25560 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Substitution 25747 34.87 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Insertion 25560 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Deletion 25560 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Substitution 25727 39.30 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Insertion 25544 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Deletion 25544 2.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Substitution 25679 41.43 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Insertion 25491 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Deletion 25491 2.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Substitution 25636 34.67 30.00 30.84 -0.84 Before
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Insertion 25449 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Deletion 25449 2.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Substitution 25483 38.01 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Insertion 25291 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Deletion 25291 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Substitution 25548 40.30 30.00 31.01 -1.01 Before
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Insertion 25350 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Deletion 25350 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Substitution 25508 37.92 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Insertion 25313 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Deletion 25313 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Substitution 27066 34.35 30.00 31.26 -1.26 Before
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Insertion 27066 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Deletion 27066 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Substitution 25434 41.38 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Insertion 25235 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Deletion 25235 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Substitution 25289 40.75 29.00 30.73 -1.73 Before
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Insertion 25084 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Deletion 25084 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Substitution 25261 41.47 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Insertion 25044 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Deletion 25044 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Substitution 25233 41.93 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Insertion 25010 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Deletion 25010 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Substitution 25239 56.37 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Insertion 25006 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Deletion 25006 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Substitution 25201 40.73 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Insertion 24966 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Deletion 24966 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Substitution 25091 35.83 29.00 30.70 -1.70 Before
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Insertion 24853 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Deletion 24853 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Substitution 25061 42.38 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Insertion 24810 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Deletion 24810 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Substitution 24973 49.66 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Insertion 24730 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Deletion 24730 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Substitution 24813 39.60 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Insertion 24578 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Deletion 24578 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 12 QualityScore Base Substitution 80727 7861.87 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L003 24 QualityScore Base Substitution 195533 773.94 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 40 QualityScore Base Substitution 7299922 5491.44 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L003 45 QualityScore Base Insertion 7576182 147.81 46.00 45.00 1.00 Before
REGRESSION.HCC1395_tumor.L003 45 QualityScore Base Deletion 7576182 341.63 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L004 AA Context Base Substitution 525242 1332.72 26.00 29.54 -3.54 Before
REGRESSION.HCC1395_tumor.L004 AAA Context Base Insertion 179190 19.33 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L004 AAA Context Base Deletion 179190 86.82 41.00 45.00 -4.00 Before
REGRESSION.HCC1395_tumor.L004 AAC Context Base Insertion 85708 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AAC Context Base Deletion 85708 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AAG Context Base Insertion 134041 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AAG Context Base Deletion 134041 5.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AAT Context Base Insertion 101845 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AAT Context Base Deletion 101845 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AC Context Base Substitution 357020 1147.96 25.00 28.74 -3.74 Before
REGRESSION.HCC1395_tumor.L004 ACA Context Base Insertion 131746 4.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACA Context Base Deletion 131746 7.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACC Context Base Insertion 104352 2.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACC Context Base Deletion 104352 2.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACG Context Base Insertion 20687 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACG Context Base Deletion 20687 2.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACT Context Base Insertion 105467 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACT Context Base Deletion 105467 6.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AG Context Base Substitution 561116 545.69 30.00 31.85 -1.85 Before
REGRESSION.HCC1395_tumor.L004 AGA Context Base Insertion 151451 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGA Context Base Deletion 151451 5.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGC Context Base Insertion 139431 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGC Context Base Deletion 139431 3.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGG Context Base Insertion 162867 5.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGG Context Base Deletion 162867 4.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGT Context Base Insertion 103177 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGT Context Base Deletion 103177 4.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AT Context Base Substitution 369391 472.09 29.00 32.09 -3.09 Before
REGRESSION.HCC1395_tumor.L004 ATA Context Base Insertion 74582 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATA Context Base Deletion 74582 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATC Context Base Insertion 78928 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATC Context Base Deletion 78928 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATG Context Base Insertion 114074 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATG Context Base Deletion 114074 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATT Context Base Insertion 108958 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATT Context Base Deletion 108958 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CA Context Base Substitution 591973 1250.50 27.00 30.00 -3.00 Before
REGRESSION.HCC1395_tumor.L004 CAA Context Base Insertion 112309 2.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAA Context Base Deletion 112309 3.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAC Context Base Insertion 125002 6.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAC Context Base Deletion 125002 9.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAG Context Base Insertion 212729 5.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAG Context Base Deletion 212729 10.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAT Context Base Insertion 110542 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAT Context Base Deletion 110542 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CC Context Base Substitution 548992 1764.61 25.00 29.00 -4.00 Before
REGRESSION.HCC1395_tumor.L004 CCA Context Base Insertion 175232 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCA Context Base Deletion 175232 2.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCC Context Base Insertion 150401 7.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCC Context Base Deletion 150401 8.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCG Context Base Insertion 37289 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCG Context Base Deletion 37289 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCT Context Base Insertion 177909 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCT Context Base Deletion 177909 7.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CG Context Base Substitution 112995 324.82 26.00 29.82 -3.82 Before
REGRESSION.HCC1395_tumor.L004 CGA Context Base Insertion 44129 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGA Context Base Deletion 44129 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGC Context Base Insertion 62891 2.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGC Context Base Deletion 62891 3.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGG Context Base Insertion 76796 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGG Context Base Deletion 76796 3.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGT Context Base Insertion 49091 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGT Context Base Deletion 49091 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CT Context Base Substitution 596267 438.97 31.00 32.48 -1.48 Before
REGRESSION.HCC1395_tumor.L004 CTA Context Base Insertion 58564 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTA Context Base Deletion 58564 4.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTC Context Base Insertion 145732 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTC Context Base Deletion 145732 9.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTG Context Base Insertion 214789 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTG Context Base Deletion 214789 5.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTT Context Base Insertion 145977 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTT Context Base Deletion 145977 5.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GA Context Base Substitution 495491 826.09 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L004 GAA Context Base Insertion 140982 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAA Context Base Deletion 140982 3.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAC Context Base Insertion 83702 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAC Context Base Deletion 83702 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAG Context Base Insertion 150437 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAG Context Base Deletion 150437 4.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAT Context Base Insertion 83200 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAT Context Base Deletion 83200 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GC Context Base Substitution 486266 1142.28 27.00 30.29 -3.29 Before
REGRESSION.HCC1395_tumor.L004 GCA Context Base Insertion 148307 1.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCA Context Base Deletion 148307 4.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCC Context Base Insertion 146113 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCC Context Base Deletion 146113 6.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCG Context Base Insertion 35844 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCG Context Base Deletion 35844 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCT Context Base Insertion 154914 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCT Context Base Deletion 154914 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GG Context Base Substitution 575697 781.58 29.00 31.85 -2.85 Before
REGRESSION.HCC1395_tumor.L004 GGA Context Base Insertion 156799 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGA Context Base Deletion 156799 5.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGC Context Base Insertion 144568 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGC Context Base Deletion 144568 4.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGG Context Base Insertion 157990 4.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGG Context Base Deletion 157990 12.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGT Context Base Insertion 114516 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGT Context Base Deletion 114516 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GT Context Base Substitution 407387 716.41 28.00 32.16 -4.16 Before
REGRESSION.HCC1395_tumor.L004 GTA Context Base Insertion 66272 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTA Context Base Deletion 66272 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTC Context Base Insertion 90850 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTC Context Base Deletion 90850 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTG Context Base Insertion 139651 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTG Context Base Deletion 139651 7.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTT Context Base Insertion 100115 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTT Context Base Deletion 100115 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TA Context Base Substitution 289042 761.23 26.00 29.70 -3.70 Before
REGRESSION.HCC1395_tumor.L004 TAA Context Base Insertion 88176 2.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAA Context Base Deletion 88176 4.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAC Context Base Insertion 60321 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAC Context Base Deletion 60321 4.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAG Context Base Insertion 59520 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAG Context Base Deletion 59520 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAT Context Base Insertion 71132 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAT Context Base Deletion 71132 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TC Context Base Substitution 447823 1081.97 26.00 30.64 -4.64 Before
REGRESSION.HCC1395_tumor.L004 TCA Context Base Insertion 132048 2.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCA Context Base Deletion 132048 6.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCC Context Base Insertion 144464 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCC Context Base Deletion 144464 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCG Context Base Insertion 18327 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCG Context Base Deletion 18327 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCT Context Base Insertion 153798 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCT Context Base Deletion 153798 7.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TG Context Base Substitution 586832 450.39 31.00 31.82 -0.82 Before
REGRESSION.HCC1395_tumor.L004 TGA Context Base Insertion 139263 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGA Context Base Deletion 139263 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGC Context Base Insertion 136278 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGC Context Base Deletion 136278 3.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGG Context Base Insertion 173744 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGG Context Base Deletion 173744 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGT Context Base Insertion 137893 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGT Context Base Deletion 137893 8.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TT Context Base Substitution 539688 708.22 29.00 32.79 -3.79 Before
REGRESSION.HCC1395_tumor.L004 TTA Context Base Insertion 87380 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTA Context Base Deletion 87380 4.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTC Context Base Insertion 129544 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTC Context Base Deletion 129544 5.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTG Context Base Insertion 114162 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTG Context Base Deletion 114162 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTT Context Base Insertion 180974 20.65 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L004 TTT Context Base Deletion 180974 52.06 43.00 45.00 -2.00 Before
REGRESSION.HCC1395_tumor.L004 -1 Cycle Base Substitution 26598 93.44 25.00 25.69 -0.69 Before
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Substitution 26867 30.48 31.00 31.47 -0.47 Before
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Insertion 26867 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Deletion 26867 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Substitution 24788 50.18 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Insertion 24558 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Deletion 24558 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Substitution 24736 45.33 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Insertion 24484 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Deletion 24484 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Substitution 24832 45.07 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Insertion 24563 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Deletion 24563 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Substitution 24797 39.57 29.00 29.94 -0.94 Before
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Insertion 24502 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Deletion 24502 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Substitution 24585 47.00 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Insertion 24304 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Deletion 24304 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Substitution 24638 50.86 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Insertion 24371 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Deletion 24371 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Substitution 24551 43.11 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Insertion 24280 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Deletion 24280 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Substitution 24340 46.22 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Insertion 24088 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Deletion 24088 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Substitution 24333 31.75 30.00 30.19 -0.19 Before
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Insertion 24082 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Deletion 24082 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Substitution 24271 47.46 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Insertion 24012 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Deletion 24012 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Substitution 26818 33.08 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Insertion 26817 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Deletion 26817 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Substitution 24213 39.97 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Insertion 23919 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Deletion 23919 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Substitution 24194 53.04 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Insertion 23906 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Deletion 23906 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Substitution 24133 45.22 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Insertion 23859 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Deletion 23859 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Substitution 23963 38.46 29.00 29.82 -0.82 Before
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Insertion 23675 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Deletion 23675 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Substitution 24037 47.89 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Insertion 23771 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Deletion 23771 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Substitution 23908 48.69 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Insertion 23629 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Deletion 23629 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Substitution 23886 41.52 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Insertion 23625 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Deletion 23625 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Substitution 23693 50.69 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Insertion 23438 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Deletion 23438 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Substitution 23757 53.97 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Insertion 23510 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Deletion 23510 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Substitution 23803 62.40 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Insertion 23552 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Deletion 23552 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Substitution 26899 37.39 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Insertion 26898 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Deletion 26898 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Substitution 23642 49.29 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Insertion 23374 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Deletion 23374 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Substitution 23501 43.82 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Insertion 23211 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Deletion 23211 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Substitution 23546 49.95 28.00 29.71 -1.71 Before
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Insertion 23244 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Deletion 23244 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Substitution 23430 49.23 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Insertion 23096 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Deletion 23096 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Substitution 23437 45.93 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Insertion 23105 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Deletion 23105 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Substitution 23258 47.52 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Insertion 22934 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Deletion 22934 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Substitution 23217 46.28 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Insertion 22886 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Deletion 22886 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Substitution 23192 38.04 29.00 29.99 -0.99 Before
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Insertion 22869 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Deletion 22869 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Substitution 23062 44.64 28.00 29.42 -1.42 Before
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Insertion 22750 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Deletion 22750 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Substitution 23026 54.52 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Insertion 22677 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Deletion 22677 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Substitution 26862 32.94 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Insertion 26861 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Deletion 26861 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Substitution 22934 43.80 28.00 29.61 -1.61 Before
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Insertion 22615 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Deletion 22615 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Substitution 22782 43.28 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Insertion 22454 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Deletion 22454 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Substitution 22784 43.11 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Insertion 22451 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Deletion 22451 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Substitution 22731 47.23 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Insertion 22411 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Deletion 22411 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Substitution 22658 44.65 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Insertion 22330 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Deletion 22330 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Substitution 22584 44.17 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Insertion 22256 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Deletion 22256 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Substitution 22503 41.94 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Insertion 22178 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Deletion 22178 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Substitution 22439 44.72 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Insertion 22092 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Deletion 22092 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Substitution 22295 40.93 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Insertion 21981 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Deletion 21981 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Substitution 22293 49.17 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Insertion 21948 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Deletion 21948 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Substitution 26783 33.64 30.00 31.80 -1.80 Before
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Insertion 26782 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Deletion 26782 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Substitution 22143 46.33 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Insertion 21783 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Deletion 21783 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Substitution 22070 46.07 28.00 29.67 -1.67 Before
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Insertion 21682 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Deletion 21682 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Substitution 22102 43.66 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Insertion 21686 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Deletion 21686 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Substitution 21897 51.72 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Insertion 21461 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Deletion 21461 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Substitution 21859 39.90 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Insertion 21403 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Deletion 21403 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Substitution 21888 49.29 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Insertion 16772 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Deletion 16772 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Substitution 21767 71.00 27.00 29.76 -2.76 Before
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Insertion 16731 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Deletion 16731 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -147 Cycle Base Substitution 21631 246.05 22.00 29.93 -7.93 Before
REGRESSION.HCC1395_tumor.L004 -148 Cycle Base Substitution 21417 852.25 15.00 30.04 -15.04 Before
REGRESSION.HCC1395_tumor.L004 -149 Cycle Base Substitution 13297 795.11 14.00 30.47 -16.47 Before
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Substitution 26856 29.80 31.00 31.70 -0.70 Before
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Insertion 26856 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Deletion 26856 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -150 Cycle Base Substitution 4639 10.82 29.00 29.64 -0.64 Before
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Substitution 26921 37.39 30.00 31.58 -1.58 Before
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Insertion 26921 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Deletion 26921 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Substitution 26797 37.54 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Insertion 26797 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Deletion 26797 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Substitution 26682 38.99 30.00 31.86 -1.86 Before
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Insertion 26682 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Deletion 26682 2.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Substitution 26748 45.19 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Insertion 26748 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Deletion 26748 2.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -2 Cycle Base Substitution 26998 76.79 27.00 28.45 -1.45 Before
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Substitution 26760 41.23 31.00 32.11 -1.11 Before
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Insertion 26760 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Deletion 26760 2.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Substitution 26743 32.45 30.00 31.87 -1.87 Before
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Insertion 26743 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Deletion 26743 3.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Substitution 26775 36.37 30.00 31.86 -1.86 Before
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Insertion 26775 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Deletion 26775 2.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Substitution 26820 39.06 30.00 31.52 -1.52 Before
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Insertion 26820 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Deletion 26820 2.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Substitution 26733 35.99 30.00 31.80 -1.80 Before
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Insertion 26733 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Deletion 26733 2.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Substitution 26714 31.07 31.00 31.56 -0.56 Before
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Insertion 26714 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Deletion 26714 2.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Substitution 26705 45.66 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Insertion 26705 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Deletion 26705 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Substitution 26744 30.39 30.00 30.38 -0.38 Before
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Insertion 26744 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Deletion 26744 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Substitution 26669 40.41 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Insertion 26668 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Deletion 26668 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Substitution 26728 50.43 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Insertion 26726 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Deletion 26726 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -3 Cycle Base Substitution 27022 78.39 27.00 29.82 -2.82 Before
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Substitution 26756 40.22 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Insertion 26754 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Deletion 26754 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Substitution 26655 41.59 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Insertion 26653 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Deletion 26653 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Substitution 26779 30.94 30.00 30.47 -0.47 Before
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Insertion 26777 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Deletion 26777 2.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Substitution 26620 36.50 30.00 30.54 -0.54 Before
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Insertion 26618 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Deletion 26618 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Substitution 26617 29.92 30.00 30.53 -0.53 Before
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Insertion 26616 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Deletion 26616 2.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Substitution 26653 36.86 30.00 30.44 -0.44 Before
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Insertion 26651 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Deletion 26651 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Substitution 26659 38.80 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Insertion 26658 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Deletion 26658 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Substitution 26558 34.58 30.00 30.42 -0.42 Before
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Insertion 26557 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Deletion 26557 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Substitution 26584 37.66 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Insertion 26583 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Deletion 26583 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Substitution 26621 43.94 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Insertion 26620 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Deletion 26620 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -4 Cycle Base Substitution 26940 81.06 27.00 29.85 -2.85 Before
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Substitution 26589 32.25 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Insertion 26584 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Deletion 26584 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Substitution 26517 40.11 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Insertion 26513 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Deletion 26513 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Substitution 26439 48.06 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Insertion 26436 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Deletion 26436 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Substitution 26537 27.61 30.00 30.44 -0.44 Before
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Insertion 26533 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Deletion 26533 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Substitution 26507 33.01 30.00 30.69 -0.69 Before
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Insertion 26504 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Deletion 26504 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Substitution 26558 35.21 30.00 30.61 -0.61 Before
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Insertion 26555 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Deletion 26555 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Substitution 26509 37.74 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Insertion 26507 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Deletion 26507 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Substitution 26440 48.69 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Insertion 26433 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Deletion 26433 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Substitution 26527 44.19 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Insertion 26521 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Deletion 26521 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Substitution 26544 39.41 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Insertion 26537 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Deletion 26537 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Substitution 27026 48.27 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Insertion 27026 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Deletion 27026 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Substitution 26523 38.62 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Insertion 26512 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Deletion 26512 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Substitution 26418 43.89 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Insertion 26411 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Deletion 26411 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Substitution 26395 35.87 30.00 30.47 -0.47 Before
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Insertion 26385 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Deletion 26385 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Substitution 26507 29.89 30.00 30.98 -0.98 Before
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Insertion 26492 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Deletion 26492 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Substitution 26398 42.30 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Insertion 26376 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Deletion 26376 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Substitution 26345 47.60 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Insertion 26316 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Deletion 26316 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Substitution 26449 35.90 30.00 30.53 -0.53 Before
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Insertion 26405 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Deletion 26405 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Substitution 26373 38.57 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Insertion 26320 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Deletion 26320 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Substitution 26465 34.08 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Insertion 26408 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Deletion 26408 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Substitution 26434 50.92 29.00 30.73 -1.73 Before
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Insertion 26379 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Deletion 26379 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Substitution 26829 47.34 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Insertion 26829 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Deletion 26829 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Substitution 26393 34.57 30.00 30.81 -0.81 Before
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Insertion 26340 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Deletion 26340 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Substitution 26296 40.05 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Insertion 26241 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Deletion 26241 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Substitution 26391 62.22 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Insertion 26337 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Deletion 26337 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Substitution 26321 41.84 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Insertion 26260 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Deletion 26260 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Substitution 26344 35.71 30.00 30.69 -0.69 Before
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Insertion 26281 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Deletion 26281 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Substitution 26400 37.56 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Insertion 26336 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Deletion 26336 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Substitution 26332 39.34 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Insertion 26267 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Deletion 26267 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Substitution 26268 38.03 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Insertion 26178 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Deletion 26178 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Substitution 26243 42.26 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Insertion 26144 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Deletion 26144 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Substitution 26238 46.01 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Insertion 26136 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Deletion 26136 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Substitution 26729 48.80 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Insertion 26729 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Deletion 26729 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Substitution 26222 51.01 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Insertion 26123 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Deletion 26123 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Substitution 26222 46.41 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Insertion 26130 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Deletion 26130 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Substitution 26125 39.92 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Insertion 26019 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Deletion 26019 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Substitution 26111 35.08 30.00 30.66 -0.66 Before
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Insertion 25989 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Deletion 25989 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Substitution 26051 37.60 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Insertion 25909 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Deletion 25909 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Substitution 26134 40.30 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Insertion 25987 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Deletion 25987 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Substitution 26086 33.07 30.00 30.73 -0.73 Before
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Insertion 25950 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Deletion 25950 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Substitution 25864 37.03 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Insertion 25728 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Deletion 25728 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Substitution 25842 42.97 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Insertion 25701 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Deletion 25701 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Substitution 25890 35.67 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Insertion 25733 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Deletion 25733 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Substitution 26851 47.20 29.00 30.74 -1.74 Before
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Insertion 26851 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Deletion 26851 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Substitution 25814 37.07 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Insertion 25663 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Deletion 25663 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Substitution 25853 41.81 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Insertion 25689 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Deletion 25689 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Substitution 25691 45.67 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Insertion 25518 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Deletion 25518 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Substitution 25709 41.73 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Insertion 25546 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Deletion 25546 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Substitution 25666 47.08 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Insertion 25491 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Deletion 25491 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Substitution 25675 35.99 30.00 30.75 -0.75 Before
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Insertion 25491 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Deletion 25491 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Substitution 25647 46.93 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Insertion 25460 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Deletion 25460 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Substitution 25540 36.64 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Insertion 25342 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Deletion 25342 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Substitution 25476 47.17 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Insertion 25276 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Deletion 25276 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Substitution 25483 47.20 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Insertion 25278 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Deletion 25278 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Substitution 26953 40.91 30.00 31.16 -1.16 Before
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Insertion 26953 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Deletion 26953 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Substitution 25384 39.37 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Insertion 25169 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Deletion 25169 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Substitution 25347 30.44 30.00 30.80 -0.80 Before
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Insertion 25149 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Deletion 25149 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Substitution 25198 53.31 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Insertion 25011 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Deletion 25011 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Substitution 25241 44.15 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Insertion 25044 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Deletion 25044 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Substitution 25227 57.13 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Insertion 25041 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Deletion 25041 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Substitution 25160 48.28 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Insertion 24939 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Deletion 24939 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Substitution 25123 42.69 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Insertion 24887 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Deletion 24887 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Substitution 24965 51.74 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Insertion 24734 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Deletion 24734 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Substitution 24873 52.55 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Insertion 24630 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Deletion 24630 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Substitution 24974 41.90 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Insertion 24748 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Deletion 24748 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 1 Cycle Base Substitution 26576 51.31 28.00 28.78 -0.78 Before
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Substitution 26832 33.25 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Insertion 26832 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Deletion 26832 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Substitution 24839 37.53 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Insertion 24607 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Deletion 24607 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Substitution 24763 44.01 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Insertion 24512 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Deletion 24512 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Substitution 24579 38.23 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Insertion 24307 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Deletion 24307 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Substitution 24578 32.92 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Insertion 24292 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Deletion 24292 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Substitution 24565 38.30 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Insertion 24291 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Deletion 24291 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Substitution 24382 43.30 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Insertion 24122 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Deletion 24122 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Substitution 24385 48.92 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Insertion 24138 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Deletion 24138 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Substitution 24352 53.21 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Insertion 24095 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Deletion 24095 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Substitution 24172 56.43 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Insertion 23914 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Deletion 23914 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Substitution 24244 33.40 30.00 30.43 -0.43 Before
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Insertion 23985 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Deletion 23985 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Substitution 26908 32.82 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Insertion 26908 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Deletion 26908 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Substitution 24157 41.99 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Insertion 23863 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Deletion 23863 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Substitution 24044 45.14 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Insertion 23758 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Deletion 23758 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Substitution 23919 33.14 30.00 30.40 -0.40 Before
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Insertion 23644 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Deletion 23644 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Substitution 23975 37.73 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Insertion 23677 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Deletion 23677 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Substitution 23949 36.68 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Insertion 23669 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Deletion 23669 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Substitution 23848 42.17 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Insertion 23581 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Deletion 23581 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Substitution 23794 41.50 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Insertion 23534 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Deletion 23534 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Substitution 23679 49.76 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Insertion 23421 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Deletion 23421 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Substitution 23634 44.02 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Insertion 23384 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Deletion 23384 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Substitution 23550 54.35 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Insertion 23305 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Deletion 23305 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Substitution 26720 32.80 30.00 31.18 -1.18 Before
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Insertion 26720 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Deletion 26720 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Substitution 23575 37.25 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Insertion 23303 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Deletion 23303 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Substitution 23414 33.70 30.00 30.30 -0.30 Before
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Insertion 23126 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Deletion 23126 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Substitution 23303 51.17 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Insertion 22993 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Deletion 22993 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Substitution 23363 40.78 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Insertion 23049 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Deletion 23049 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Substitution 23348 49.57 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Insertion 23021 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Deletion 23021 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Substitution 23333 43.05 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Insertion 23015 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Deletion 23015 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Substitution 23187 51.96 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Insertion 22868 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Deletion 22868 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Substitution 23146 45.22 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Insertion 22842 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Deletion 22842 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Substitution 23122 38.52 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Insertion 22810 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Deletion 22810 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Substitution 22926 38.76 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Insertion 22613 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Deletion 22613 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Substitution 26790 35.65 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Insertion 26790 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Deletion 26790 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Substitution 22934 42.98 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Insertion 22619 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Deletion 22619 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Substitution 22705 45.05 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Insertion 22378 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Deletion 22378 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Substitution 22684 38.95 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Insertion 22354 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Deletion 22354 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Substitution 22641 41.79 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Insertion 22329 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Deletion 22329 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Substitution 22602 35.91 29.00 29.97 -0.97 Before
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Insertion 22270 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Deletion 22270 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Substitution 22469 49.56 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Insertion 22145 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Deletion 22145 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Substitution 22495 37.45 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Insertion 22165 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Deletion 22165 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Substitution 22434 39.14 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Insertion 22105 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Deletion 22105 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Substitution 22274 44.93 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Insertion 21962 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Deletion 21962 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Substitution 22287 51.24 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Insertion 21969 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Deletion 21969 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Substitution 26788 38.54 30.00 31.62 -1.62 Before
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Insertion 26788 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Deletion 26788 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Substitution 22189 47.69 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Insertion 21877 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Deletion 21877 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Substitution 22151 42.80 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Insertion 21826 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Deletion 21826 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Substitution 22000 40.76 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Insertion 21641 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Deletion 21641 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Substitution 21940 40.24 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Insertion 21610 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Deletion 21610 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Substitution 21909 30.07 30.00 30.17 -0.17 Before
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Insertion 21582 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Deletion 21582 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Substitution 21789 37.28 29.00 29.66 -0.66 Before
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Insertion 21473 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Deletion 21473 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Substitution 21706 36.85 29.00 29.86 -0.86 Before
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Insertion 21406 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Deletion 21406 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 147 Cycle Base Substitution 21741 47.67 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L004 148 Cycle Base Substitution 21540 55.10 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L004 149 Cycle Base Substitution 21523 47.61 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Substitution 26807 34.67 30.00 31.62 -1.62 Before
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Insertion 26807 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Deletion 26807 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 150 Cycle Base Substitution 21415 43.41 28.00 29.47 -1.47 Before
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Substitution 26902 32.28 31.00 32.96 -1.96 Before
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Insertion 26902 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Deletion 26902 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Substitution 26808 21.58 32.00 32.69 -0.69 Before
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Insertion 26808 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Deletion 26808 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Substitution 26833 19.16 33.00 33.37 -0.37 Before
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Insertion 26833 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Deletion 26833 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Substitution 26745 18.01 32.00 32.99 -0.99 Before
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Insertion 26745 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Deletion 26745 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 2 Cycle Base Substitution 27055 54.82 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Substitution 26756 23.24 32.00 33.18 -1.18 Before
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Insertion 26756 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Deletion 26756 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Substitution 26796 26.37 32.00 32.96 -0.96 Before
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Insertion 26796 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Deletion 26796 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Substitution 26751 20.46 33.00 33.46 -0.46 Before
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Insertion 26751 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Deletion 26751 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Substitution 26744 22.85 32.00 33.17 -1.17 Before
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Insertion 26744 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Deletion 26744 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Substitution 26725 25.62 32.00 33.34 -1.34 Before
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Insertion 26725 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Deletion 26725 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Substitution 26668 23.11 32.00 33.26 -1.26 Before
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Insertion 26668 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Deletion 26668 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Substitution 26786 32.54 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Insertion 26785 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Deletion 26785 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Substitution 26686 35.13 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Insertion 26685 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Deletion 26685 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Substitution 26640 28.51 31.00 31.57 -0.57 Before
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Insertion 26639 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Deletion 26639 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Substitution 26690 26.76 31.00 31.65 -0.65 Before
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Insertion 26690 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Deletion 26690 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 3 Cycle Base Substitution 26974 56.69 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Substitution 26550 33.19 30.00 31.82 -1.82 Before
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Insertion 26549 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Deletion 26549 2.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Substitution 26641 27.65 31.00 31.89 -0.89 Before
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Insertion 26640 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Deletion 26640 2.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Substitution 26676 41.05 30.00 31.52 -1.52 Before
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Insertion 26675 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Deletion 26675 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Substitution 26592 25.45 31.00 31.62 -0.62 Before
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Insertion 26592 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Deletion 26592 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Substitution 26569 26.74 31.00 31.74 -0.74 Before
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Insertion 26569 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Deletion 26569 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Substitution 26460 32.32 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Insertion 26460 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Deletion 26460 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Substitution 26587 30.75 31.00 32.14 -1.14 Before
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Insertion 26587 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Deletion 26587 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Substitution 26615 34.59 30.00 31.59 -1.59 Before
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Insertion 26613 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Deletion 26613 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Substitution 26612 35.17 30.00 31.74 -1.74 Before
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Insertion 26611 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Deletion 26611 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Substitution 26541 33.29 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Insertion 26539 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Deletion 26539 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 4 Cycle Base Substitution 26832 54.72 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Substitution 26502 35.01 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Insertion 26499 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Deletion 26499 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Substitution 26535 35.32 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Insertion 26532 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Deletion 26532 3.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Substitution 26451 21.18 32.00 32.01 -0.01 Before
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Insertion 26447 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Deletion 26447 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Substitution 26546 43.01 30.00 31.73 -1.73 Before
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Insertion 26544 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Deletion 26544 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Substitution 26552 24.29 31.00 31.66 -0.66 Before
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Insertion 26550 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Deletion 26550 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Substitution 26367 42.90 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Insertion 26364 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Deletion 26364 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Substitution 26544 29.80 31.00 31.53 -0.53 Before
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Insertion 26541 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Deletion 26541 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Substitution 26414 27.97 31.00 31.78 -0.78 Before
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Insertion 26409 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Deletion 26409 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Substitution 26338 29.75 31.00 31.96 -0.96 Before
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Insertion 26332 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Deletion 26332 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Substitution 26442 31.04 31.00 31.45 -0.45 Before
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Insertion 26435 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Deletion 26435 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Substitution 26946 44.72 30.00 31.16 -1.16 Before
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Insertion 26946 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Deletion 26946 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Substitution 26446 40.93 29.00 30.89 -1.89 Before
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Insertion 26438 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Deletion 26438 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Substitution 26459 38.69 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Insertion 26450 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Deletion 26450 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Substitution 26403 33.36 30.00 31.64 -1.64 Before
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Insertion 26389 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Deletion 26389 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Substitution 26421 36.63 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Insertion 26403 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Deletion 26403 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Substitution 26274 25.95 31.00 31.42 -0.42 Before
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Insertion 26256 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Deletion 26256 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Substitution 26367 38.85 30.00 31.48 -1.48 Before
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Insertion 26337 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Deletion 26337 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Substitution 26365 34.31 30.00 31.67 -1.67 Before
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Insertion 26321 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Deletion 26321 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Substitution 26327 46.96 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Insertion 26284 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Deletion 26284 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Substitution 26296 32.40 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Insertion 26248 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Deletion 26248 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Substitution 26285 33.14 30.00 31.71 -1.71 Before
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Insertion 26234 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Deletion 26234 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Substitution 26769 37.62 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Insertion 26769 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Deletion 26769 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Substitution 26259 37.58 30.00 31.36 -1.36 Before
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Insertion 26206 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Deletion 26206 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Substitution 26198 29.88 31.00 31.39 -0.39 Before
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Insertion 26147 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Deletion 26147 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Substitution 26206 40.22 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Insertion 26149 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Deletion 26149 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Substitution 26135 35.92 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Insertion 26079 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Deletion 26079 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Substitution 26172 35.30 30.00 31.32 -1.32 Before
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Insertion 26112 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Deletion 26112 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Substitution 26154 50.66 30.00 31.14 -1.14 Before
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Insertion 26088 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Deletion 26088 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Substitution 26072 26.98 31.00 31.49 -0.49 Before
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Insertion 25991 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Deletion 25991 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Substitution 26173 39.80 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Insertion 26079 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Deletion 26079 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Substitution 26205 31.56 30.00 31.40 -1.40 Before
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Insertion 26108 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Deletion 26108 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Substitution 26140 34.35 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Insertion 26042 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Deletion 26042 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Substitution 26830 30.28 31.00 31.79 -0.79 Before
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Insertion 26830 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Deletion 26830 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Substitution 26108 28.02 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Insertion 26014 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Deletion 26014 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Substitution 26092 25.54 31.00 31.31 -0.31 Before
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Insertion 25999 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Deletion 25999 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Substitution 25958 35.24 30.00 31.04 -1.04 Before
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Insertion 25856 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Deletion 25856 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Substitution 26020 45.94 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Insertion 25901 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Deletion 25901 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Substitution 25921 27.99 31.00 31.46 -0.46 Before
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Insertion 25787 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Deletion 25787 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Substitution 25865 29.23 31.00 31.14 -0.14 Before
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Insertion 25727 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Deletion 25727 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Substitution 25935 29.42 31.00 31.15 -0.15 Before
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Insertion 25807 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Deletion 25807 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Substitution 25973 44.05 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Insertion 25848 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Deletion 25848 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Substitution 25800 32.88 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Insertion 25670 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Deletion 25670 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Substitution 25841 33.80 30.00 31.12 -1.12 Before
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Insertion 25685 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Deletion 25685 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Substitution 26791 24.00 31.00 31.39 -0.39 Before
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Insertion 26791 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Deletion 26791 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Substitution 25723 39.32 30.00 31.04 -1.04 Before
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Insertion 25560 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Deletion 25560 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Substitution 25627 48.10 30.00 31.01 -1.01 Before
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Insertion 25463 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Deletion 25463 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Substitution 25627 35.02 30.00 30.84 -0.84 Before
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Insertion 25459 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Deletion 25459 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Substitution 25605 46.61 29.00 30.86 -1.86 Before
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Insertion 25449 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Deletion 25449 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Substitution 25562 46.70 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Insertion 25390 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Deletion 25390 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Substitution 25507 40.81 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Insertion 25328 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Deletion 25328 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Substitution 25366 46.71 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Insertion 25180 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Deletion 25180 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Substitution 25481 37.05 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Insertion 25281 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Deletion 25281 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Substitution 25358 35.67 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Insertion 25164 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Deletion 25164 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Substitution 25166 37.99 29.00 30.93 -1.93 Before
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Insertion 24964 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Deletion 24964 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Substitution 26929 38.92 30.00 31.11 -1.11 Before
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Insertion 26929 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Deletion 26929 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Substitution 25212 39.04 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Insertion 24999 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Deletion 24999 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Substitution 25203 43.08 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Insertion 25010 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Deletion 25010 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Substitution 25212 42.17 29.00 30.92 -1.92 Before
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Insertion 25013 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Deletion 25013 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Substitution 25097 31.24 30.00 30.84 -0.84 Before
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Insertion 24894 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Deletion 24894 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Substitution 25174 42.32 30.00 31.01 -1.01 Before
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Insertion 24989 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Deletion 24989 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Substitution 25023 42.82 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Insertion 24810 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Deletion 24810 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Substitution 24958 38.71 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Insertion 24739 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Deletion 24739 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Substitution 24901 36.35 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Insertion 24665 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Deletion 24665 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Substitution 24907 32.51 30.00 30.72 -0.72 Before
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Insertion 24665 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Deletion 24665 2.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Substitution 24814 42.45 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Insertion 24585 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Deletion 24585 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 12 QualityScore Base Substitution 78985 7622.42 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L004 24 QualityScore Base Substitution 193362 701.35 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 40 QualityScore Base Substitution 7272057 5567.63 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L004 45 QualityScore Base Insertion 7544404 136.27 47.00 45.00 2.00 Before
REGRESSION.HCC1395_tumor.L004 45 QualityScore Base Deletion 7544404 376.20 43.00 45.00 -2.00 Before
REGRESSION.HCC1395_tumor.L005 AA Context Base Substitution 523431 1295.25 26.00 29.63 -3.63 Before
REGRESSION.HCC1395_tumor.L005 AAA Context Base Insertion 176821 21.06 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L005 AAA Context Base Deletion 176821 67.85 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L005 AAC Context Base Insertion 86095 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AAC Context Base Deletion 86095 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AAG Context Base Insertion 135153 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AAG Context Base Deletion 135153 5.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AAT Context Base Insertion 100924 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AAT Context Base Deletion 100924 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AC Context Base Substitution 358789 1111.58 25.00 28.63 -3.63 Before
REGRESSION.HCC1395_tumor.L005 ACA Context Base Insertion 132577 4.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACA Context Base Deletion 132577 9.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACC Context Base Insertion 105249 3.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACC Context Base Deletion 105249 2.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACG Context Base Insertion 20865 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACG Context Base Deletion 20865 2.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACT Context Base Insertion 105603 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACT Context Base Deletion 105603 3.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AG Context Base Substitution 565011 550.01 30.00 31.91 -1.91 Before
REGRESSION.HCC1395_tumor.L005 AGA Context Base Insertion 152604 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGA Context Base Deletion 152604 5.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGC Context Base Insertion 141004 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGC Context Base Deletion 141004 4.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGG Context Base Insertion 165322 6.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGG Context Base Deletion 165322 4.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGT Context Base Insertion 102967 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGT Context Base Deletion 102967 3.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AT Context Base Substitution 369520 501.69 29.00 32.13 -3.13 Before
REGRESSION.HCC1395_tumor.L005 ATA Context Base Insertion 74258 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATA Context Base Deletion 74258 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATC Context Base Insertion 79821 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATC Context Base Deletion 79821 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATG Context Base Insertion 114821 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATG Context Base Deletion 114821 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATT Context Base Insertion 107955 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATT Context Base Deletion 107955 2.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CA Context Base Substitution 597431 1275.79 27.00 29.93 -2.93 Before
REGRESSION.HCC1395_tumor.L005 CAA Context Base Insertion 112818 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAA Context Base Deletion 112818 2.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAC Context Base Insertion 126040 7.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAC Context Base Deletion 126040 8.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAG Context Base Insertion 214637 5.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAG Context Base Deletion 214637 10.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAT Context Base Insertion 111574 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAT Context Base Deletion 111574 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CC Context Base Substitution 558146 1838.95 25.00 28.88 -3.88 Before
REGRESSION.HCC1395_tumor.L005 CCA Context Base Insertion 178102 2.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCA Context Base Deletion 178102 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCC Context Base Insertion 154208 6.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCC Context Base Deletion 154208 5.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCG Context Base Insertion 37618 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCG Context Base Deletion 37618 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCT Context Base Insertion 179770 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCT Context Base Deletion 179770 4.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CG Context Base Substitution 114556 368.88 26.00 29.61 -3.61 Before
REGRESSION.HCC1395_tumor.L005 CGA Context Base Insertion 44716 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGA Context Base Deletion 44716 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGC Context Base Insertion 64593 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGC Context Base Deletion 64593 3.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGG Context Base Insertion 77479 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGG Context Base Deletion 77479 3.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGT Context Base Insertion 49219 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGT Context Base Deletion 49219 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CT Context Base Substitution 601914 469.54 31.00 32.45 -1.45 Before
REGRESSION.HCC1395_tumor.L005 CTA Context Base Insertion 59080 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTA Context Base Deletion 59080 2.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTC Context Base Insertion 147343 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTC Context Base Deletion 147343 6.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTG Context Base Insertion 216569 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTG Context Base Deletion 216569 4.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTT Context Base Insertion 146282 4.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTT Context Base Deletion 146282 4.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GA Context Base Substitution 498557 870.12 28.00 29.52 -1.52 Before
REGRESSION.HCC1395_tumor.L005 GAA Context Base Insertion 141546 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAA Context Base Deletion 141546 3.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAC Context Base Insertion 84030 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAC Context Base Deletion 84030 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAG Context Base Insertion 151091 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAG Context Base Deletion 151091 3.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAT Context Base Insertion 83982 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAT Context Base Deletion 83982 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GC Context Base Substitution 492917 1154.63 27.00 30.14 -3.14 Before
REGRESSION.HCC1395_tumor.L005 GCA Context Base Insertion 149802 2.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCA Context Base Deletion 149802 3.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCC Context Base Insertion 148544 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCC Context Base Deletion 148544 4.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCG Context Base Insertion 36478 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCG Context Base Deletion 36478 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCT Context Base Insertion 157471 2.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCT Context Base Deletion 157471 2.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GG Context Base Substitution 582896 780.31 29.00 31.71 -2.71 Before
REGRESSION.HCC1395_tumor.L005 GGA Context Base Insertion 157618 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGA Context Base Deletion 157618 4.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGC Context Base Insertion 146713 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGC Context Base Deletion 146713 5.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGG Context Base Insertion 160300 5.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGG Context Base Deletion 160300 8.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGT Context Base Insertion 116098 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGT Context Base Deletion 116098 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GT Context Base Substitution 410483 716.50 28.00 31.99 -3.99 Before
REGRESSION.HCC1395_tumor.L005 GTA Context Base Insertion 65946 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTA Context Base Deletion 65946 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTC Context Base Insertion 91595 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTC Context Base Deletion 91595 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTG Context Base Insertion 141450 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTG Context Base Deletion 141450 4.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTT Context Base Insertion 99772 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTT Context Base Deletion 99772 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TA Context Base Substitution 288054 832.09 26.00 29.78 -3.78 Before
REGRESSION.HCC1395_tumor.L005 TAA Context Base Insertion 87580 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAA Context Base Deletion 87580 3.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAC Context Base Insertion 60327 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAC Context Base Deletion 60327 3.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAG Context Base Insertion 59892 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAG Context Base Deletion 59892 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAT Context Base Insertion 70322 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAT Context Base Deletion 70322 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TC Context Base Substitution 451346 1009.42 27.00 30.53 -3.53 Before
REGRESSION.HCC1395_tumor.L005 TCA Context Base Insertion 132219 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCA Context Base Deletion 132219 5.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCC Context Base Insertion 146362 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCC Context Base Deletion 146362 3.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCG Context Base Insertion 18732 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCG Context Base Deletion 18732 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCT Context Base Insertion 154845 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCT Context Base Deletion 154845 5.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TG Context Base Substitution 591102 481.20 31.00 31.73 -0.73 Before
REGRESSION.HCC1395_tumor.L005 TGA Context Base Insertion 139808 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGA Context Base Deletion 139808 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGC Context Base Insertion 137415 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGC Context Base Deletion 137415 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGG Context Base Insertion 175453 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGG Context Base Deletion 175453 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGT Context Base Insertion 139464 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGT Context Base Deletion 139464 4.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TT Context Base Substitution 535630 710.65 29.00 32.90 -3.90 Before
REGRESSION.HCC1395_tumor.L005 TTA Context Base Insertion 86495 2.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTA Context Base Deletion 86495 2.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTC Context Base Insertion 129813 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTC Context Base Deletion 129813 6.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTG Context Base Insertion 114032 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTG Context Base Deletion 114032 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTT Context Base Insertion 178039 14.90 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L005 TTT Context Base Deletion 178039 51.71 43.00 45.00 -2.00 Before
REGRESSION.HCC1395_tumor.L005 -1 Cycle Base Substitution 26826 85.95 25.00 25.86 -0.86 Before
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Substitution 27071 40.64 30.00 31.24 -1.24 Before
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Insertion 27071 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Deletion 27071 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Substitution 24881 49.33 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Insertion 24613 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Deletion 24613 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Substitution 24840 66.04 28.00 30.11 -2.11 Before
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Insertion 24568 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Deletion 24568 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Substitution 24735 46.83 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Insertion 24465 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Deletion 24465 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Substitution 24703 59.16 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Insertion 24442 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Deletion 24442 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Substitution 24601 44.43 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Insertion 24352 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Deletion 24352 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Substitution 24478 44.82 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Insertion 24227 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Deletion 24227 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Substitution 24527 42.88 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Insertion 24278 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Deletion 24278 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Substitution 24346 40.98 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Insertion 24086 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Deletion 24086 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Substitution 24360 54.01 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Insertion 24091 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Deletion 24091 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Substitution 24388 44.25 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Insertion 24128 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Deletion 24128 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Substitution 26977 40.01 30.00 31.21 -1.21 Before
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Insertion 26977 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Deletion 26977 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Substitution 24322 50.43 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Insertion 24046 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Deletion 24046 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Substitution 24301 37.60 29.00 29.93 -0.93 Before
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Insertion 24027 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Deletion 24027 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Substitution 24214 42.25 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Insertion 23922 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Deletion 23922 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Substitution 24089 53.82 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Insertion 23794 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Deletion 23794 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Substitution 23984 53.62 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Insertion 23707 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Deletion 23707 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Substitution 23891 59.99 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Insertion 23590 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Deletion 23590 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Substitution 23871 53.29 28.00 29.61 -1.61 Before
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Insertion 23575 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Deletion 23575 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Substitution 23867 60.60 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Insertion 23564 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Deletion 23564 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Substitution 23775 55.20 28.00 29.70 -1.70 Before
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Insertion 23467 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Deletion 23467 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Substitution 23716 49.22 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Insertion 23422 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Deletion 23422 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Substitution 26995 46.96 30.00 31.72 -1.72 Before
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Insertion 26995 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Deletion 26995 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Substitution 23695 46.67 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Insertion 23393 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Deletion 23393 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Substitution 23546 42.78 28.00 29.55 -1.55 Before
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Insertion 23252 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Deletion 23252 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Substitution 23509 51.77 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Insertion 23217 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Deletion 23217 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Substitution 23462 43.09 28.00 29.50 -1.50 Before
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Insertion 23156 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Deletion 23156 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Substitution 23367 64.31 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Insertion 23061 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Deletion 23061 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Substitution 23389 48.34 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Insertion 23084 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Deletion 23084 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Substitution 23228 37.19 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Insertion 22932 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Deletion 22932 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Substitution 23114 33.97 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Insertion 22796 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Deletion 22796 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Substitution 23090 51.24 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Insertion 22759 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Deletion 22759 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Substitution 23059 44.91 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Insertion 22736 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Deletion 22736 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Substitution 26975 47.22 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Insertion 26975 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Deletion 26975 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Substitution 22908 45.96 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Insertion 22586 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Deletion 22586 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Substitution 22917 44.22 28.00 29.49 -1.49 Before
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Insertion 22584 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Deletion 22584 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Substitution 22813 43.78 28.00 29.67 -1.67 Before
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Insertion 22486 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Deletion 22486 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Substitution 22757 45.92 28.00 29.42 -1.42 Before
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Insertion 22433 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Deletion 22433 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Substitution 22739 48.85 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Insertion 22405 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Deletion 22405 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Substitution 22529 53.08 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Insertion 22196 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Deletion 22196 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Substitution 22536 32.05 30.00 30.03 -0.03 Before
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Insertion 22197 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Deletion 22197 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Substitution 22377 44.53 28.00 29.48 -1.48 Before
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Insertion 22024 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Deletion 22024 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Substitution 22353 57.81 28.00 29.43 -1.43 Before
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Insertion 21973 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Deletion 21973 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Substitution 22352 37.40 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Insertion 21977 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Deletion 21977 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Substitution 27061 39.26 30.00 31.67 -1.67 Before
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Insertion 27061 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Deletion 27061 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Substitution 22215 37.58 29.00 29.65 -0.65 Before
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Insertion 21823 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Deletion 21823 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Substitution 22039 32.00 29.00 29.67 -0.67 Before
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Insertion 21641 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Deletion 21641 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Substitution 21999 32.71 29.00 30.00 -1.00 Before
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Insertion 21583 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Deletion 21583 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Substitution 21918 33.02 29.00 30.00 -1.00 Before
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Insertion 21472 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Deletion 21472 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Substitution 21798 32.01 30.00 30.32 -0.32 Before
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Insertion 21319 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Deletion 21319 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Substitution 21819 39.88 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Insertion 16758 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Deletion 16758 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Substitution 21700 65.94 28.00 30.29 -2.29 Before
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Insertion 16669 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Deletion 16669 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -147 Cycle Base Substitution 21619 231.05 23.00 29.89 -6.89 Before
REGRESSION.HCC1395_tumor.L005 -148 Cycle Base Substitution 21412 869.85 15.00 29.96 -14.96 Before
REGRESSION.HCC1395_tumor.L005 -149 Cycle Base Substitution 13338 797.36 14.00 30.90 -16.90 Before
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Substitution 27101 27.44 31.00 31.72 -0.72 Before
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Insertion 27101 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Deletion 27101 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -150 Cycle Base Substitution 4697 6.44 30.00 30.41 -0.41 Before
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Substitution 27012 34.24 30.00 31.69 -1.69 Before
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Insertion 27012 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Deletion 27012 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Substitution 27003 33.90 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Insertion 27003 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Deletion 27003 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Substitution 27017 30.56 31.00 31.90 -0.90 Before
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Insertion 27017 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Deletion 27017 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Substitution 26910 41.76 30.00 31.75 -1.75 Before
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Insertion 26910 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Deletion 26910 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -2 Cycle Base Substitution 27240 77.86 27.00 28.71 -1.71 Before
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Substitution 26963 29.12 31.00 31.74 -0.74 Before
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Insertion 26963 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Deletion 26963 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Substitution 26921 37.62 30.00 31.78 -1.78 Before
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Insertion 26921 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Deletion 26921 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Substitution 26958 32.64 30.00 31.58 -1.58 Before
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Insertion 26958 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Deletion 26958 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Substitution 26904 33.61 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Insertion 26904 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Deletion 26904 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Substitution 26939 40.29 30.00 31.70 -1.70 Before
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Insertion 26939 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Deletion 26939 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Substitution 26953 38.23 30.00 31.67 -1.67 Before
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Insertion 26953 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Deletion 26953 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Substitution 26908 52.02 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Insertion 26908 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Deletion 26908 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Substitution 26872 37.68 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Insertion 26872 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Deletion 26872 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Substitution 26920 50.51 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Insertion 26919 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Deletion 26919 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Substitution 26900 40.86 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Insertion 26898 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Deletion 26898 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -3 Cycle Base Substitution 27295 70.50 28.00 29.59 -1.59 Before
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Substitution 26918 40.20 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Insertion 26916 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Deletion 26916 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Substitution 26803 45.56 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Insertion 26801 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Deletion 26801 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Substitution 26910 34.24 30.00 30.60 -0.60 Before
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Insertion 26909 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Deletion 26909 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Substitution 26885 41.80 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Insertion 26884 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Deletion 26884 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Substitution 26927 39.06 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Insertion 26926 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Deletion 26926 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Substitution 26872 50.03 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Insertion 26870 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Deletion 26870 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Substitution 26787 35.44 30.00 30.44 -0.44 Before
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Insertion 26785 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Deletion 26785 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Substitution 26803 36.19 30.00 30.36 -0.36 Before
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Insertion 26802 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Deletion 26802 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Substitution 26793 24.93 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Insertion 26792 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Deletion 26792 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Substitution 26863 41.55 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Insertion 26863 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Deletion 26863 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -4 Cycle Base Substitution 27148 68.64 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Substitution 26822 44.68 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Insertion 26821 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Deletion 26821 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Substitution 26770 36.09 30.00 30.31 -0.31 Before
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Insertion 26769 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Deletion 26769 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Substitution 26735 42.56 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Insertion 26732 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Deletion 26732 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Substitution 26733 37.32 30.00 30.59 -0.59 Before
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Insertion 26729 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Deletion 26729 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Substitution 26629 40.46 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Insertion 26625 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Deletion 26625 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Substitution 26578 43.28 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Insertion 26573 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Deletion 26573 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Substitution 26726 47.03 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Insertion 26719 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Deletion 26719 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Substitution 26684 45.33 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Insertion 26673 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Deletion 26673 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Substitution 26631 42.91 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Insertion 26616 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Deletion 26616 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Substitution 26683 32.64 30.00 30.90 -0.90 Before
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Insertion 26665 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Deletion 26665 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Substitution 27204 51.12 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Insertion 27204 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Deletion 27204 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Substitution 26688 46.13 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Insertion 26668 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Deletion 26668 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Substitution 26600 38.26 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Insertion 26580 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Deletion 26580 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Substitution 26578 36.43 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Insertion 26549 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Deletion 26549 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Substitution 26657 35.22 30.00 30.72 -0.72 Before
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Insertion 26625 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Deletion 26625 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Substitution 26699 37.21 30.00 30.84 -0.84 Before
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Insertion 26659 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Deletion 26659 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Substitution 26583 48.79 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Insertion 26546 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Deletion 26546 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Substitution 26493 49.16 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Insertion 26454 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Deletion 26454 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Substitution 26611 43.92 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Insertion 26577 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Deletion 26577 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Substitution 26475 43.97 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Insertion 26435 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Deletion 26435 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Substitution 26465 40.98 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Insertion 26420 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Deletion 26420 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Substitution 27127 48.43 29.00 30.75 -1.75 Before
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Insertion 27127 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Deletion 27127 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Substitution 26510 42.62 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Insertion 26468 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Deletion 26468 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Substitution 26561 41.58 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Insertion 26508 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Deletion 26508 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Substitution 26515 43.89 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Insertion 26452 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Deletion 26452 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Substitution 26484 41.73 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Insertion 26417 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Deletion 26417 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Substitution 26427 41.25 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Insertion 26368 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Deletion 26368 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Substitution 26403 38.66 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Insertion 26345 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Deletion 26345 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Substitution 26401 50.53 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Insertion 26325 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Deletion 26325 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Substitution 26481 40.30 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Insertion 26413 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Deletion 26413 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Substitution 26441 38.20 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Insertion 26352 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Deletion 26352 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Substitution 26311 38.93 30.00 31.12 -1.12 Before
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Insertion 26227 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Deletion 26227 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Substitution 27215 49.63 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Insertion 27215 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Deletion 27215 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Substitution 26369 47.77 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Insertion 26270 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Deletion 26270 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Substitution 26243 49.24 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Insertion 26139 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Deletion 26139 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Substitution 26229 42.06 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Insertion 26112 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Deletion 26112 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Substitution 26161 33.60 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Insertion 26044 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Deletion 26044 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Substitution 26203 47.77 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Insertion 26074 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Deletion 26074 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Substitution 26100 41.72 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Insertion 25979 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Deletion 25979 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Substitution 26022 45.27 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Insertion 25899 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Deletion 25899 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Substitution 26029 30.66 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Insertion 25899 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Deletion 25899 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Substitution 26152 44.40 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Insertion 26016 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Deletion 26016 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Substitution 26159 44.81 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Insertion 26003 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Deletion 26003 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Substitution 27087 42.08 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Insertion 27087 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Deletion 27087 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Substitution 25968 40.47 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Insertion 25808 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Deletion 25808 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Substitution 25905 38.16 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Insertion 25747 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Deletion 25747 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Substitution 25847 52.72 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Insertion 25671 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Deletion 25671 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Substitution 25829 51.01 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Insertion 25646 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Deletion 25646 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Substitution 25666 40.96 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Insertion 25485 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Deletion 25485 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Substitution 25653 48.09 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Insertion 25454 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Deletion 25454 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Substitution 25835 42.72 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Insertion 25636 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Deletion 25636 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Substitution 25726 51.13 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Insertion 25534 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Deletion 25534 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Substitution 25550 41.16 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Insertion 25345 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Deletion 25345 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Substitution 25542 48.19 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Insertion 25335 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Deletion 25335 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Substitution 27015 43.56 29.00 30.99 -1.99 Before
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Insertion 27015 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Deletion 27015 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Substitution 25475 44.69 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Insertion 25254 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Deletion 25254 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Substitution 25394 53.41 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Insertion 25154 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Deletion 25154 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Substitution 25414 38.45 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Insertion 25183 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Deletion 25183 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Substitution 25362 45.11 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Insertion 25124 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Deletion 25124 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Substitution 25266 59.68 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Insertion 25002 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Deletion 25002 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Substitution 25089 43.75 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Insertion 24845 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Deletion 24845 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Substitution 25016 47.98 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Insertion 24760 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Deletion 24760 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Substitution 25040 49.22 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Insertion 24772 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Deletion 24772 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Substitution 24840 44.69 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Insertion 24578 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Deletion 24578 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Substitution 24922 45.32 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Insertion 24650 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Deletion 24650 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 1 Cycle Base Substitution 26839 64.88 27.00 28.77 -1.77 Before
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Substitution 27151 28.25 31.00 31.31 -0.31 Before
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Insertion 27151 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Deletion 27151 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Substitution 25021 45.35 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Insertion 24764 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Deletion 24764 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Substitution 24937 46.42 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Insertion 24675 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Deletion 24675 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Substitution 24881 35.10 30.00 30.48 -0.48 Before
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Insertion 24614 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Deletion 24614 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Substitution 24760 43.10 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Insertion 24498 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Deletion 24498 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Substitution 24661 33.78 30.00 30.68 -0.68 Before
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Insertion 24405 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Deletion 24405 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Substitution 24558 30.88 30.00 30.62 -0.62 Before
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Insertion 24304 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Deletion 24304 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Substitution 24603 41.93 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Insertion 24344 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Deletion 24344 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Substitution 24596 34.72 30.00 30.35 -0.35 Before
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Insertion 24355 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Deletion 24355 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Substitution 24518 46.68 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Insertion 24250 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Deletion 24250 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Substitution 24484 45.31 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Insertion 24220 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Deletion 24220 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Substitution 27104 38.45 30.00 31.27 -1.27 Before
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Insertion 27104 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Deletion 27104 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Substitution 24332 47.81 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Insertion 24060 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Deletion 24060 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Substitution 24259 43.43 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Insertion 23976 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Deletion 23976 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Substitution 24124 45.09 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Insertion 23829 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Deletion 23829 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Substitution 24146 43.96 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Insertion 23854 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Deletion 23854 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Substitution 24088 45.77 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Insertion 23803 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Deletion 23803 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Substitution 24066 34.39 30.00 30.46 -0.46 Before
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Insertion 23782 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Deletion 23782 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Substitution 23919 49.79 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Insertion 23643 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Deletion 23643 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Substitution 23857 45.78 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Insertion 23578 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Deletion 23578 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Substitution 23757 40.27 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Insertion 23461 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Deletion 23461 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Substitution 23748 62.16 28.00 30.06 -2.06 Before
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Insertion 23477 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Deletion 23477 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Substitution 27018 37.57 30.00 31.14 -1.14 Before
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Insertion 27018 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Deletion 27018 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Substitution 23654 46.97 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Insertion 23392 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Deletion 23392 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Substitution 23680 41.50 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Insertion 23398 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Deletion 23398 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Substitution 23576 48.65 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Insertion 23296 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Deletion 23296 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Substitution 23464 43.81 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Insertion 23150 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Deletion 23150 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Substitution 23468 50.74 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Insertion 23157 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Deletion 23157 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Substitution 23361 34.30 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Insertion 23059 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Deletion 23059 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Substitution 23329 46.40 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Insertion 23022 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Deletion 23022 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Substitution 23310 46.99 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Insertion 22993 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Deletion 22993 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Substitution 23211 43.18 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Insertion 22906 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Deletion 22906 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Substitution 23166 52.43 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Insertion 22840 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Deletion 22840 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Substitution 26960 35.34 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Insertion 26960 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Deletion 26960 2.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Substitution 22978 40.66 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Insertion 22670 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Deletion 22670 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Substitution 22903 38.55 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Insertion 22598 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Deletion 22598 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Substitution 22934 43.88 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Insertion 22627 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Deletion 22627 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Substitution 22809 36.57 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Insertion 22501 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Deletion 22501 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Substitution 22735 44.52 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Insertion 22411 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Deletion 22411 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Substitution 22773 39.45 29.00 29.86 -0.86 Before
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Insertion 22446 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Deletion 22446 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Substitution 22659 38.75 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Insertion 22320 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Deletion 22320 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Substitution 22575 39.49 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Insertion 22238 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Deletion 22238 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Substitution 22509 41.36 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Insertion 22178 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Deletion 22178 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Substitution 22501 49.70 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Insertion 22159 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Deletion 22159 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Substitution 27103 35.45 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Insertion 27103 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Deletion 27103 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Substitution 22342 46.79 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Insertion 22014 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Deletion 22014 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Substitution 22227 53.88 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Insertion 21893 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Deletion 21893 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Substitution 22155 48.41 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Insertion 21812 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Deletion 21812 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Substitution 22113 38.58 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Insertion 21771 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Deletion 21771 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Substitution 21988 46.98 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Insertion 21634 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Deletion 21634 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Substitution 21929 49.74 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Insertion 21570 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Deletion 21570 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Substitution 21865 45.36 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Insertion 21524 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Deletion 21524 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 147 Cycle Base Substitution 21761 51.56 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L005 148 Cycle Base Substitution 21663 35.42 29.00 29.62 -0.62 Before
REGRESSION.HCC1395_tumor.L005 149 Cycle Base Substitution 21613 43.08 28.00 29.61 -1.61 Before
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Substitution 27004 36.45 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Insertion 27004 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Deletion 27004 1.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 150 Cycle Base Substitution 21542 38.85 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Substitution 27001 22.51 32.00 33.02 -1.02 Before
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Insertion 27001 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Deletion 27001 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Substitution 27085 21.24 33.00 33.16 -0.16 Before
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Insertion 27085 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Deletion 27085 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Substitution 27003 26.75 31.00 32.85 -1.85 Before
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Insertion 27003 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Deletion 27003 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Substitution 27078 19.87 32.00 32.70 -0.70 Before
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Insertion 27078 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Deletion 27078 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 2 Cycle Base Substitution 27222 58.16 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Substitution 27026 23.04 32.00 32.82 -0.82 Before
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Insertion 27026 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Deletion 27026 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Substitution 26948 30.06 32.00 33.10 -1.10 Before
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Insertion 26948 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Deletion 26948 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Substitution 26973 17.00 33.00 33.08 -0.08 Before
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Insertion 26973 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Deletion 26973 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Substitution 26965 29.51 32.00 33.16 -1.16 Before
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Insertion 26965 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Deletion 26965 2.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Substitution 26908 27.23 32.00 33.03 -1.03 Before
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Insertion 26908 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Deletion 26908 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Substitution 26969 18.30 33.00 33.14 -0.14 Before
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Insertion 26969 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Deletion 26969 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Substitution 26974 26.42 31.00 31.59 -0.59 Before
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Insertion 26974 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Deletion 26974 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Substitution 26826 29.11 31.00 31.31 -0.31 Before
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Insertion 26826 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Deletion 26826 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Substitution 26888 32.10 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Insertion 26888 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Deletion 26888 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Substitution 26857 27.90 31.00 31.91 -0.91 Before
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Insertion 26857 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Deletion 26857 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 3 Cycle Base Substitution 27282 61.68 29.00 31.09 -2.09 Before
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Substitution 26848 34.46 30.00 31.74 -1.74 Before
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Insertion 26848 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Deletion 26848 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Substitution 26934 33.92 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Insertion 26934 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Deletion 26934 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Substitution 26789 42.22 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Insertion 26789 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Deletion 26789 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Substitution 26776 30.36 31.00 31.80 -0.80 Before
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Insertion 26776 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Deletion 26776 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Substitution 26799 31.25 31.00 31.38 -0.38 Before
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Insertion 26799 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Deletion 26799 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Substitution 26890 24.28 31.00 31.49 -0.49 Before
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Insertion 26890 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Deletion 26890 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Substitution 26905 42.27 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Insertion 26904 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Deletion 26904 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Substitution 26833 29.80 31.00 32.02 -1.02 Before
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Insertion 26833 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Deletion 26833 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Substitution 26693 39.94 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Insertion 26692 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Deletion 26692 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Substitution 26706 26.68 31.00 31.91 -0.91 Before
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Insertion 26706 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Deletion 26706 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 4 Cycle Base Substitution 27177 57.20 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Substitution 26769 27.31 31.00 31.75 -0.75 Before
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Insertion 26768 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Deletion 26768 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Substitution 26713 27.32 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Insertion 26711 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Deletion 26711 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Substitution 26714 30.55 31.00 31.84 -0.84 Before
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Insertion 26709 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Deletion 26709 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Substitution 26837 32.09 30.00 31.61 -1.61 Before
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Insertion 26832 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Deletion 26832 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Substitution 26726 38.61 30.00 31.64 -1.64 Before
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Insertion 26722 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Deletion 26722 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Substitution 26653 35.20 30.00 31.89 -1.89 Before
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Insertion 26647 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Deletion 26647 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Substitution 26725 21.57 31.00 31.83 -0.83 Before
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Insertion 26720 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Deletion 26720 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Substitution 26678 28.59 31.00 31.66 -0.66 Before
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Insertion 26669 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Deletion 26669 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Substitution 26676 24.74 31.00 31.69 -0.69 Before
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Insertion 26663 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Deletion 26663 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Substitution 26624 32.27 30.00 31.36 -1.36 Before
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Insertion 26610 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Deletion 26610 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Substitution 27155 42.60 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Insertion 27155 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Deletion 27155 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Substitution 26702 34.81 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Insertion 26681 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Deletion 26681 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Substitution 26689 31.68 30.00 31.75 -1.75 Before
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Insertion 26666 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Deletion 26666 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Substitution 26707 33.27 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Insertion 26686 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Deletion 26686 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Substitution 26634 30.46 31.00 31.54 -0.54 Before
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Insertion 26605 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Deletion 26605 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Substitution 26560 32.29 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Insertion 26527 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Deletion 26527 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Substitution 26693 38.08 30.00 31.58 -1.58 Before
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Insertion 26658 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Deletion 26658 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Substitution 26535 31.44 31.00 31.72 -0.72 Before
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Insertion 26498 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Deletion 26498 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Substitution 26565 37.99 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Insertion 26534 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Deletion 26534 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Substitution 26574 36.46 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Insertion 26544 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Deletion 26544 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Substitution 26535 32.25 30.00 31.22 -1.22 Before
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Insertion 26497 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Deletion 26497 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Substitution 27112 32.00 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Insertion 27112 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Deletion 27112 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Substitution 26590 35.99 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Insertion 26547 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Deletion 26547 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Substitution 26479 28.66 31.00 31.28 -0.28 Before
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Insertion 26423 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Deletion 26423 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Substitution 26430 35.99 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Insertion 26371 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Deletion 26371 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Substitution 26502 44.47 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Insertion 26433 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Deletion 26433 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Substitution 26451 37.04 30.00 31.58 -1.58 Before
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Insertion 26389 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Deletion 26389 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Substitution 26427 35.71 30.00 31.33 -1.33 Before
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Insertion 26362 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Deletion 26362 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Substitution 26471 28.17 31.00 31.31 -0.31 Before
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Insertion 26402 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Deletion 26402 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Substitution 26404 37.00 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Insertion 26334 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Deletion 26334 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Substitution 26398 32.33 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Insertion 26321 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Deletion 26321 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Substitution 26359 25.30 31.00 31.23 -0.23 Before
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Insertion 26275 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Deletion 26275 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Substitution 27119 34.89 30.00 30.90 -0.90 Before
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Insertion 27119 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Deletion 27119 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Substitution 26308 31.05 31.00 31.22 -0.22 Before
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Insertion 26209 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Deletion 26209 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Substitution 26281 37.52 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Insertion 26176 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Deletion 26176 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Substitution 26198 37.21 30.00 31.18 -1.18 Before
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Insertion 26089 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Deletion 26089 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Substitution 26179 48.18 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Insertion 26054 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Deletion 26054 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Substitution 26296 36.71 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Insertion 26171 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Deletion 26171 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Substitution 26232 32.06 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Insertion 26105 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Deletion 26105 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Substitution 26172 34.37 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Insertion 26036 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Deletion 26036 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Substitution 26079 39.75 30.00 31.14 -1.14 Before
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Insertion 25943 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Deletion 25943 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Substitution 26076 31.73 30.00 31.31 -1.31 Before
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Insertion 25936 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Deletion 25936 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Substitution 25956 42.09 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Insertion 25793 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Deletion 25793 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Substitution 27191 40.62 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Insertion 27191 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Deletion 27191 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Substitution 26039 37.97 29.00 30.97 -1.97 Before
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Insertion 25879 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Deletion 25879 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Substitution 25999 33.83 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Insertion 25835 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Deletion 25835 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Substitution 25909 38.65 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Insertion 25738 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Deletion 25738 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Substitution 25716 35.94 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Insertion 25534 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Deletion 25534 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Substitution 25910 48.60 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Insertion 25715 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Deletion 25715 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Substitution 25765 38.47 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Insertion 25569 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Deletion 25569 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Substitution 25676 38.62 29.00 30.92 -1.92 Before
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Insertion 25483 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Deletion 25483 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Substitution 25842 37.69 29.00 30.83 -1.83 Before
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Insertion 25637 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Deletion 25637 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Substitution 25590 47.73 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Insertion 25380 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Deletion 25380 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Substitution 25664 44.92 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Insertion 25460 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Deletion 25460 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Substitution 27072 30.62 31.00 31.39 -0.39 Before
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Insertion 27072 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Deletion 27072 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Substitution 25715 54.60 29.00 31.06 -2.06 Before
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Insertion 25488 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Deletion 25488 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Substitution 25499 42.74 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Insertion 25272 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Deletion 25272 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Substitution 25397 34.89 30.00 30.94 -0.94 Before
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Insertion 25159 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Deletion 25159 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Substitution 25262 38.05 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Insertion 25023 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Deletion 25023 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Substitution 25375 33.53 30.00 30.83 -0.83 Before
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Insertion 25124 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Deletion 25124 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Substitution 25264 43.64 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Insertion 25011 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Deletion 25011 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Substitution 25117 43.30 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Insertion 24862 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Deletion 24862 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Substitution 25111 38.11 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Insertion 24864 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Deletion 24864 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Substitution 25016 43.79 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Insertion 24761 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Deletion 24761 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Substitution 25058 35.41 30.00 30.96 -0.96 Before
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Insertion 24794 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Deletion 24794 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 12 QualityScore Base Substitution 80813 7750.91 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L005 24 QualityScore Base Substitution 197200 805.63 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 40 QualityScore Base Substitution 7315440 5561.25 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L005 45 QualityScore Base Insertion 7593453 134.44 47.00 45.00 2.00 Before
REGRESSION.HCC1395_tumor.L005 45 QualityScore Base Deletion 7593453 318.74 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L006 AA Context Base Substitution 521248 1421.59 26.00 29.56 -3.56 Before
REGRESSION.HCC1395_tumor.L006 AAA Context Base Insertion 176566 24.16 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L006 AAA Context Base Deletion 176566 80.72 41.00 45.00 -4.00 Before
REGRESSION.HCC1395_tumor.L006 AAC Context Base Insertion 85012 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AAC Context Base Deletion 85012 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AAG Context Base Insertion 133043 4.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AAG Context Base Deletion 133043 4.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AAT Context Base Insertion 101081 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AAT Context Base Deletion 101081 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AC Context Base Substitution 354833 1093.93 25.00 28.68 -3.68 Before
REGRESSION.HCC1395_tumor.L006 ACA Context Base Insertion 131369 2.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACA Context Base Deletion 131369 6.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACC Context Base Insertion 103798 3.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACC Context Base Deletion 103798 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACG Context Base Insertion 20526 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACG Context Base Deletion 20526 2.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACT Context Base Insertion 104890 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACT Context Base Deletion 104890 4.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AG Context Base Substitution 558648 547.40 30.00 31.67 -1.67 Before
REGRESSION.HCC1395_tumor.L006 AGA Context Base Insertion 151250 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGA Context Base Deletion 151250 3.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGC Context Base Insertion 139021 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGC Context Base Deletion 139021 4.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGG Context Base Insertion 162454 6.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGG Context Base Deletion 162454 4.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGT Context Base Insertion 102539 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGT Context Base Deletion 102539 3.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AT Context Base Substitution 368346 465.83 29.00 32.04 -3.04 Before
REGRESSION.HCC1395_tumor.L006 ATA Context Base Insertion 74619 0.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATA Context Base Deletion 74619 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATC Context Base Insertion 78981 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATC Context Base Deletion 78981 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATG Context Base Insertion 114650 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATG Context Base Deletion 114650 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATT Context Base Insertion 107622 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATT Context Base Deletion 107622 2.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CA Context Base Substitution 591296 1254.06 27.00 29.97 -2.97 Before
REGRESSION.HCC1395_tumor.L006 CAA Context Base Insertion 111772 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAA Context Base Deletion 111772 3.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAC Context Base Insertion 124789 4.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAC Context Base Deletion 124789 7.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAG Context Base Insertion 212140 5.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAG Context Base Deletion 212140 9.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAT Context Base Insertion 110892 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAT Context Base Deletion 110892 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CC Context Base Substitution 547047 1716.41 25.00 28.92 -3.92 Before
REGRESSION.HCC1395_tumor.L006 CCA Context Base Insertion 175330 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCA Context Base Deletion 175330 3.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCC Context Base Insertion 149917 6.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCC Context Base Deletion 149917 7.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCG Context Base Insertion 37514 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCG Context Base Deletion 37514 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCT Context Base Insertion 176402 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCT Context Base Deletion 176402 6.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CG Context Base Substitution 112837 343.45 26.00 29.52 -3.52 Before
REGRESSION.HCC1395_tumor.L006 CGA Context Base Insertion 44142 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGA Context Base Deletion 44142 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGC Context Base Insertion 62662 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGC Context Base Deletion 62662 2.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGG Context Base Insertion 76509 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGG Context Base Deletion 76509 2.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGT Context Base Insertion 48403 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGT Context Base Deletion 48403 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CT Context Base Substitution 591999 433.60 31.00 32.50 -1.50 Before
REGRESSION.HCC1395_tumor.L006 CTA Context Base Insertion 58235 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTA Context Base Deletion 58235 4.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTC Context Base Insertion 145258 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTC Context Base Deletion 145258 8.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTG Context Base Insertion 211634 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTG Context Base Deletion 211634 5.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTT Context Base Insertion 145223 3.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTT Context Base Deletion 145223 5.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GA Context Base Substitution 493589 881.29 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L006 GAA Context Base Insertion 140911 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAA Context Base Deletion 140911 2.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAC Context Base Insertion 83365 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAC Context Base Deletion 83365 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAG Context Base Insertion 149351 0.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAG Context Base Deletion 149351 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAT Context Base Insertion 83382 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAT Context Base Deletion 83382 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GC Context Base Substitution 483999 1119.30 27.00 30.11 -3.11 Before
REGRESSION.HCC1395_tumor.L006 GCA Context Base Insertion 147914 2.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCA Context Base Deletion 147914 2.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCC Context Base Insertion 145311 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCC Context Base Deletion 145311 6.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCG Context Base Insertion 35610 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCG Context Base Deletion 35610 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCT Context Base Insertion 153777 2.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCT Context Base Deletion 153777 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GG Context Base Substitution 572127 778.75 29.00 31.64 -2.64 Before
REGRESSION.HCC1395_tumor.L006 GGA Context Base Insertion 155563 2.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGA Context Base Deletion 155563 4.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGC Context Base Insertion 143583 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGC Context Base Deletion 143583 5.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGG Context Base Insertion 156667 4.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGG Context Base Deletion 156667 10.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGT Context Base Insertion 114248 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGT Context Base Deletion 114248 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GT Context Base Substitution 404906 695.03 28.00 32.00 -4.00 Before
REGRESSION.HCC1395_tumor.L006 GTA Context Base Insertion 65489 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTA Context Base Deletion 65489 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTC Context Base Insertion 90556 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTC Context Base Deletion 90556 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTG Context Base Insertion 138583 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTG Context Base Deletion 138583 8.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTT Context Base Insertion 99186 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTT Context Base Deletion 99186 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TA Context Base Substitution 287147 806.46 26.00 29.66 -3.66 Before
REGRESSION.HCC1395_tumor.L006 TAA Context Base Insertion 87519 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAA Context Base Deletion 87519 4.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAC Context Base Insertion 59333 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAC Context Base Deletion 59333 3.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAG Context Base Insertion 59706 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAG Context Base Deletion 59706 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAT Context Base Insertion 70297 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAT Context Base Deletion 70297 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TC Context Base Substitution 446351 1015.65 27.00 30.48 -3.48 Before
REGRESSION.HCC1395_tumor.L006 TCA Context Base Insertion 132119 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCA Context Base Deletion 132119 6.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCC Context Base Insertion 144423 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCC Context Base Deletion 144423 4.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCG Context Base Insertion 18327 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCG Context Base Deletion 18327 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCT Context Base Insertion 152905 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCT Context Base Deletion 152905 6.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TG Context Base Substitution 582304 451.08 31.00 31.80 -0.80 Before
REGRESSION.HCC1395_tumor.L006 TGA Context Base Insertion 138847 0.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGA Context Base Deletion 138847 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGC Context Base Insertion 135568 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGC Context Base Deletion 135568 2.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGG Context Base Insertion 172232 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGG Context Base Deletion 172232 4.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGT Context Base Insertion 136995 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGT Context Base Deletion 136995 4.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TT Context Base Substitution 533734 714.98 29.00 32.84 -3.84 Before
REGRESSION.HCC1395_tumor.L006 TTA Context Base Insertion 86597 2.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTA Context Base Deletion 86597 3.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTC Context Base Insertion 128840 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTC Context Base Deletion 128840 7.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTG Context Base Insertion 113298 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTG Context Base Deletion 113298 2.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTT Context Base Insertion 178089 16.84 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L006 TTT Context Base Deletion 178089 54.66 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L006 -1 Cycle Base Substitution 26433 96.48 25.00 26.04 -1.04 Before
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Substitution 26750 32.59 30.00 31.12 -1.12 Before
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Insertion 26750 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Deletion 26750 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Substitution 24515 50.57 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Insertion 24268 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Deletion 24268 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Substitution 24573 46.18 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Insertion 24334 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Deletion 24334 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Substitution 24477 56.20 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Insertion 24227 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Deletion 24227 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Substitution 24373 36.98 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Insertion 24131 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Deletion 24131 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Substitution 24336 44.05 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Insertion 24094 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Deletion 24094 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Substitution 24337 47.35 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Insertion 24103 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Deletion 24103 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Substitution 24271 37.76 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Insertion 24035 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Deletion 24035 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Substitution 24239 44.83 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Insertion 23990 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Deletion 23990 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Substitution 24182 47.55 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Insertion 23922 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Deletion 23922 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Substitution 24030 40.49 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Insertion 23776 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Deletion 23776 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Substitution 26769 39.18 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Insertion 26769 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Deletion 26769 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Substitution 23978 45.37 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Insertion 23718 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Deletion 23718 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Substitution 23973 41.22 29.00 29.71 -0.71 Before
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Insertion 23713 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Deletion 23713 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Substitution 23901 47.81 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Insertion 23625 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Deletion 23625 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Substitution 23932 46.00 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Insertion 23642 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Deletion 23642 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Substitution 23834 37.21 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Insertion 23533 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Deletion 23533 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Substitution 23665 53.89 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Insertion 23357 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Deletion 23357 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Substitution 23587 56.54 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Insertion 23296 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Deletion 23296 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Substitution 23597 58.03 28.00 29.54 -1.54 Before
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Insertion 23300 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Deletion 23300 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Substitution 23516 56.71 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Insertion 23222 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Deletion 23222 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Substitution 23549 67.59 27.00 29.72 -2.72 Before
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Insertion 23255 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Deletion 23255 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Substitution 26718 31.66 30.00 31.79 -1.79 Before
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Insertion 26718 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Deletion 26718 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Substitution 23460 51.03 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Insertion 23173 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Deletion 23173 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Substitution 23277 67.39 27.00 29.76 -2.76 Before
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Insertion 22974 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Deletion 22974 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Substitution 23186 46.76 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Insertion 22887 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Deletion 22887 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Substitution 23300 52.35 28.00 29.49 -1.49 Before
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Insertion 23008 0.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Deletion 23008 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Substitution 23204 55.52 28.00 29.47 -1.47 Before
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Insertion 22919 0.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Deletion 22919 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Substitution 23077 44.79 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Insertion 22779 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Deletion 22779 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Substitution 22999 45.34 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Insertion 22705 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Deletion 22705 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Substitution 22992 49.10 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Insertion 22712 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Deletion 22712 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Substitution 22919 43.95 28.00 29.58 -1.58 Before
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Insertion 22616 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Deletion 22616 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Substitution 22940 43.13 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Insertion 22616 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Deletion 22616 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Substitution 26717 46.38 30.00 31.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Insertion 26717 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Deletion 26717 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Substitution 22810 46.53 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Insertion 22489 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Deletion 22489 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Substitution 22745 40.91 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Insertion 22420 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Deletion 22420 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Substitution 22591 42.98 28.00 29.49 -1.49 Before
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Insertion 22278 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Deletion 22278 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Substitution 22488 48.92 28.00 29.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Insertion 22193 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Deletion 22193 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Substitution 22354 34.82 29.00 29.84 -0.84 Before
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Insertion 22052 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Deletion 22052 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Substitution 22352 48.29 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Insertion 22038 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Deletion 22038 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Substitution 22339 42.71 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Insertion 22004 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Deletion 22004 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Substitution 22289 49.62 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Insertion 21936 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Deletion 21936 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Substitution 22181 55.21 28.00 29.54 -1.54 Before
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Insertion 21815 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Deletion 21815 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Substitution 22193 44.43 28.00 29.45 -1.45 Before
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Insertion 21800 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Deletion 21800 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Substitution 26786 35.41 30.00 31.67 -1.67 Before
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Insertion 26786 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Deletion 26786 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Substitution 22031 40.44 28.00 29.52 -1.52 Before
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Insertion 21667 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Deletion 21667 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Substitution 21913 38.51 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Insertion 21529 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Deletion 21529 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Substitution 21820 43.89 28.00 29.51 -1.51 Before
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Insertion 21399 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Deletion 21399 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Substitution 21697 42.52 28.00 29.42 -1.42 Before
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Insertion 21249 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Deletion 21249 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Substitution 21601 25.83 29.00 29.84 -0.84 Before
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Insertion 21101 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Deletion 21101 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Substitution 21449 33.96 29.00 29.75 -0.75 Before
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Insertion 16490 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Deletion 16490 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Substitution 21267 67.23 27.00 29.80 -2.80 Before
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Insertion 16386 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Deletion 16386 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -147 Cycle Base Substitution 21233 241.83 22.00 29.68 -7.68 Before
REGRESSION.HCC1395_tumor.L006 -148 Cycle Base Substitution 21178 853.28 15.00 30.12 -15.12 Before
REGRESSION.HCC1395_tumor.L006 -149 Cycle Base Substitution 13184 772.87 14.00 30.34 -16.34 Before
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Substitution 26677 27.06 31.00 31.64 -0.64 Before
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Insertion 26677 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Deletion 26677 2.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -150 Cycle Base Substitution 4563 9.97 30.00 30.25 -0.25 Before
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Substitution 26680 35.54 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Insertion 26680 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Deletion 26680 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Substitution 26704 35.59 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Insertion 26704 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Deletion 26704 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Substitution 26682 38.22 30.00 31.92 -1.92 Before
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Insertion 26682 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Deletion 26682 2.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Substitution 26724 32.48 30.00 31.91 -1.91 Before
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Insertion 26724 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Deletion 26724 2.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -2 Cycle Base Substitution 26793 74.88 27.00 28.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Substitution 26674 38.88 30.00 31.64 -1.64 Before
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Insertion 26674 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Deletion 26674 3.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Substitution 26601 29.74 31.00 31.85 -0.85 Before
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Insertion 26601 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Deletion 26601 2.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Substitution 26577 32.30 30.00 31.88 -1.88 Before
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Insertion 26577 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Deletion 26577 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Substitution 26676 31.44 31.00 31.53 -0.53 Before
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Insertion 26676 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Deletion 26676 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Substitution 26653 41.06 30.00 31.80 -1.80 Before
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Insertion 26653 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Deletion 26653 2.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Substitution 26632 27.59 31.00 32.16 -1.16 Before
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Insertion 26632 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Deletion 26632 2.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Substitution 26641 39.86 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Insertion 26641 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Deletion 26641 2.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Substitution 26594 26.33 30.00 30.05 -0.05 Before
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Insertion 26594 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Deletion 26594 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Substitution 26616 38.49 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Insertion 26616 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Deletion 26616 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Substitution 26411 35.98 29.00 29.99 -0.99 Before
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Insertion 26411 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Deletion 26411 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -3 Cycle Base Substitution 26969 78.46 27.00 29.58 -2.58 Before
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Substitution 26539 32.97 30.00 30.17 -0.17 Before
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Insertion 26539 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Deletion 26539 2.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Substitution 26482 45.09 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Insertion 26482 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Deletion 26482 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Substitution 26532 31.11 30.00 30.66 -0.66 Before
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Insertion 26531 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Deletion 26531 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Substitution 26487 49.09 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Insertion 26486 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Deletion 26486 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Substitution 26523 47.96 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Insertion 26522 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Deletion 26522 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Substitution 26579 29.97 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Insertion 26575 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Deletion 26575 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Substitution 26510 44.70 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Insertion 26507 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Deletion 26507 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Substitution 26563 28.63 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Insertion 26559 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Deletion 26559 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Substitution 26486 35.82 30.00 30.25 -0.25 Before
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Insertion 26482 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Deletion 26482 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Substitution 26512 27.77 30.00 30.40 -0.40 Before
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Insertion 26511 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Deletion 26511 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -4 Cycle Base Substitution 26749 74.17 28.00 30.02 -2.02 Before
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Substitution 26430 30.46 30.00 30.54 -0.54 Before
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Insertion 26427 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Deletion 26427 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Substitution 26470 45.13 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Insertion 26467 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Deletion 26467 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Substitution 26388 36.66 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Insertion 26385 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Deletion 26385 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Substitution 26401 33.77 30.00 30.52 -0.52 Before
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Insertion 26400 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Deletion 26400 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Substitution 26344 40.02 29.00 30.98 -1.98 Before
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Insertion 26343 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Deletion 26343 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Substitution 26388 40.64 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Insertion 26382 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Deletion 26382 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Substitution 26279 35.36 30.00 30.35 -0.35 Before
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Insertion 26274 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Deletion 26274 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Substitution 26367 41.61 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Insertion 26359 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Deletion 26359 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Substitution 26380 37.16 30.00 30.72 -0.72 Before
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Insertion 26374 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Deletion 26374 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Substitution 26378 44.90 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Insertion 26374 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Deletion 26374 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Substitution 26783 58.20 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Insertion 26783 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Deletion 26783 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Substitution 26335 45.99 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Insertion 26321 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Deletion 26321 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Substitution 26354 42.14 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Insertion 26342 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Deletion 26342 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Substitution 26359 46.24 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Insertion 26342 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Deletion 26342 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Substitution 26357 30.28 30.00 30.44 -0.44 Before
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Insertion 26333 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Deletion 26333 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Substitution 26318 38.35 29.00 30.82 -1.82 Before
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Insertion 26293 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Deletion 26293 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Substitution 26079 33.72 30.00 30.34 -0.34 Before
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Insertion 26049 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Deletion 26049 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Substitution 26316 31.98 30.00 30.94 -0.94 Before
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Insertion 26276 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Deletion 26276 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Substitution 26212 40.90 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Insertion 26175 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Deletion 26175 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Substitution 26339 36.00 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Insertion 26297 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Deletion 26297 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Substitution 26083 27.07 30.00 30.99 -0.99 Before
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Insertion 26036 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Deletion 26036 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Substitution 26780 50.31 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Insertion 26780 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Deletion 26780 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Substitution 26117 38.09 29.00 30.73 -1.73 Before
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Insertion 26068 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Deletion 26068 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Substitution 26064 33.35 30.00 30.49 -0.49 Before
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Insertion 26005 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Deletion 26005 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Substitution 26155 31.08 30.00 30.36 -0.36 Before
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Insertion 26098 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Deletion 26098 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Substitution 26252 33.33 30.00 30.74 -0.74 Before
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Insertion 26187 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Deletion 26187 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Substitution 26115 29.27 30.00 30.64 -0.64 Before
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Insertion 26047 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Deletion 26047 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Substitution 26056 46.89 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Insertion 25986 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Deletion 25986 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Substitution 25998 34.54 30.00 30.34 -0.34 Before
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Insertion 25914 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Deletion 25914 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Substitution 26015 46.16 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Insertion 25932 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Deletion 25932 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Substitution 26024 47.17 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Insertion 25944 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Deletion 25944 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Substitution 26025 26.09 30.00 30.88 -0.88 Before
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Insertion 25934 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Deletion 25934 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Substitution 26696 53.94 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Insertion 26696 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Deletion 26696 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Substitution 26025 41.60 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Insertion 25934 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Deletion 25934 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Substitution 25970 39.22 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Insertion 25861 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Deletion 25861 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Substitution 25815 45.57 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Insertion 25702 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Deletion 25702 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Substitution 25777 39.42 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Insertion 25643 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Deletion 25643 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Substitution 25836 45.93 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Insertion 25707 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Deletion 25707 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Substitution 25806 42.80 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Insertion 25677 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Deletion 25677 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Substitution 25753 31.70 30.00 30.91 -0.91 Before
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Insertion 25614 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Deletion 25614 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Substitution 25766 49.86 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Insertion 25619 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Deletion 25619 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Substitution 25644 53.64 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Insertion 25494 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Deletion 25494 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Substitution 25623 36.42 30.00 30.60 -0.60 Before
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Insertion 25463 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Deletion 25463 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Substitution 26831 45.37 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Insertion 26831 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Deletion 26831 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Substitution 25811 37.28 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Insertion 25637 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Deletion 25637 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Substitution 25599 43.93 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Insertion 25414 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Deletion 25414 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Substitution 25573 47.68 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Insertion 25383 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Deletion 25383 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Substitution 25438 41.66 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Insertion 25237 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Deletion 25237 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Substitution 25501 38.99 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Insertion 25303 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Deletion 25303 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Substitution 25392 46.57 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Insertion 25202 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Deletion 25202 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Substitution 25364 45.64 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Insertion 25171 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Deletion 25171 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Substitution 25237 47.92 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Insertion 25053 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Deletion 25053 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Substitution 25283 40.45 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Insertion 25090 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Deletion 25090 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Substitution 25259 50.86 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Insertion 25054 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Deletion 25054 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Substitution 26838 52.53 29.00 30.92 -1.92 Before
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Insertion 26838 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Deletion 26838 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Substitution 25126 49.91 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Insertion 24916 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Deletion 24916 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Substitution 25146 37.27 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Insertion 24933 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Deletion 24933 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Substitution 25008 44.75 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Insertion 24787 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Deletion 24787 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Substitution 24817 44.97 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Insertion 24594 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Deletion 24594 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Substitution 24889 51.17 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Insertion 24649 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Deletion 24649 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Substitution 24869 53.75 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Insertion 24632 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Deletion 24632 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Substitution 24788 55.31 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Insertion 24537 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Deletion 24537 2.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Substitution 24794 42.01 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Insertion 24539 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Deletion 24539 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Substitution 24808 44.86 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Insertion 24559 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Deletion 24559 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Substitution 24667 49.70 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Insertion 24423 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Deletion 24423 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 1 Cycle Base Substitution 26501 59.56 27.00 28.68 -1.68 Before
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Substitution 26837 36.69 30.00 31.21 -1.21 Before
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Insertion 26837 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Deletion 26837 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Substitution 24525 42.53 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Insertion 24286 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Deletion 24286 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Substitution 24559 37.78 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Insertion 24329 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Deletion 24329 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Substitution 24556 32.66 30.00 30.74 -0.74 Before
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Insertion 24300 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Deletion 24300 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Substitution 24567 42.81 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Insertion 24315 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Deletion 24315 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Substitution 24404 48.66 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Insertion 24172 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Deletion 24172 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Substitution 24346 40.00 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Insertion 24110 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Deletion 24110 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Substitution 24335 39.69 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Insertion 24114 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Deletion 24114 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Substitution 24243 47.27 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Insertion 23975 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Deletion 23975 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Substitution 24140 61.51 28.00 30.26 -2.26 Before
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Insertion 23880 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Deletion 23880 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Substitution 24114 49.04 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Insertion 23862 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Deletion 23862 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Substitution 26789 31.30 31.00 31.33 -0.33 Before
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Insertion 26789 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Deletion 26789 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Substitution 23974 58.43 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Insertion 23721 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Deletion 23721 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Substitution 23925 44.63 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Insertion 23676 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Deletion 23676 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Substitution 23911 40.95 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Insertion 23644 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Deletion 23644 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Substitution 23808 49.97 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Insertion 23524 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Deletion 23524 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Substitution 23878 43.15 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Insertion 23547 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Deletion 23547 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Substitution 23809 39.74 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Insertion 23507 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Deletion 23507 2.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Substitution 23762 42.51 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Insertion 23469 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Deletion 23469 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Substitution 23770 47.82 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Insertion 23480 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Deletion 23480 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Substitution 23576 51.55 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Insertion 23288 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Deletion 23288 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Substitution 23503 51.22 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Insertion 23207 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Deletion 23207 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Substitution 26735 31.22 30.00 30.99 -0.99 Before
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Insertion 26735 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Deletion 26735 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Substitution 23462 42.34 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Insertion 23157 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Deletion 23157 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Substitution 23441 43.25 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Insertion 23150 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Deletion 23150 2.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Substitution 23342 41.42 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Insertion 23037 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Deletion 23037 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Substitution 23175 46.45 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Insertion 22898 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Deletion 22898 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Substitution 23153 51.01 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Insertion 22877 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Deletion 22877 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Substitution 23007 35.20 29.00 29.95 -0.95 Before
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Insertion 22714 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Deletion 22714 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Substitution 23004 58.83 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Insertion 22716 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Deletion 22716 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Substitution 22980 47.92 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Insertion 22700 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Deletion 22700 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Substitution 22897 47.32 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Insertion 22611 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Deletion 22611 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Substitution 22829 53.78 28.00 29.58 -1.58 Before
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Insertion 22515 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Deletion 22515 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Substitution 26737 37.71 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Insertion 26737 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Deletion 26737 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Substitution 22708 35.79 29.00 29.96 -0.96 Before
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Insertion 22410 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Deletion 22410 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Substitution 22788 46.73 28.00 29.67 -1.67 Before
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Insertion 22465 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Deletion 22465 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Substitution 22768 45.75 28.00 29.63 -1.63 Before
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Insertion 22443 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Deletion 22443 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Substitution 22604 46.88 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Insertion 22318 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Deletion 22318 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Substitution 22549 42.06 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Insertion 22227 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Deletion 22227 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Substitution 22547 46.88 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Insertion 22236 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Deletion 22236 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Substitution 22338 27.87 30.00 30.24 -0.24 Before
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Insertion 22004 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Deletion 22004 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Substitution 22386 50.45 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Insertion 22066 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Deletion 22066 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Substitution 22209 41.51 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Insertion 21895 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Deletion 21895 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Substitution 22219 38.02 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Insertion 21875 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Deletion 21875 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Substitution 26774 34.37 30.00 31.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Insertion 26774 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Deletion 26774 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Substitution 22081 45.13 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Insertion 21759 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Deletion 21759 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Substitution 22021 52.99 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Insertion 21700 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Deletion 21700 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Substitution 21908 39.93 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Insertion 21538 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Deletion 21538 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Substitution 21805 44.41 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Insertion 21432 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Deletion 21432 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Substitution 21834 41.44 28.00 29.57 -1.57 Before
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Insertion 21487 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Deletion 21487 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Substitution 21697 39.87 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Insertion 21303 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Deletion 21303 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Substitution 21527 40.73 28.00 29.51 -1.51 Before
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Insertion 21187 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Deletion 21187 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 147 Cycle Base Substitution 21526 54.85 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L006 148 Cycle Base Substitution 21381 41.96 28.00 29.56 -1.56 Before
REGRESSION.HCC1395_tumor.L006 149 Cycle Base Substitution 21328 48.39 28.00 29.62 -1.62 Before
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Substitution 26714 34.19 30.00 31.70 -1.70 Before
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Insertion 26714 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Deletion 26714 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 150 Cycle Base Substitution 21309 47.72 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Substitution 26752 28.56 31.00 32.80 -1.80 Before
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Insertion 26752 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Deletion 26752 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Substitution 26663 25.09 32.00 32.89 -0.89 Before
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Insertion 26663 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Deletion 26663 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Substitution 26616 22.32 32.00 32.63 -0.63 Before
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Insertion 26616 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Deletion 26616 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Substitution 26529 21.65 32.00 32.68 -0.68 Before
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Insertion 26529 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Deletion 26529 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 2 Cycle Base Substitution 26787 50.93 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Substitution 26649 23.91 32.00 32.65 -0.65 Before
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Insertion 26649 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Deletion 26649 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Substitution 26639 26.97 32.00 33.58 -1.58 Before
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Insertion 26639 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Deletion 26639 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Substitution 26560 20.81 33.00 33.19 -0.19 Before
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Insertion 26560 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Deletion 26560 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Substitution 26586 13.47 33.00 33.15 -0.15 Before
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Insertion 26586 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Deletion 26586 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Substitution 26594 17.79 33.00 33.19 -0.19 Before
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Insertion 26594 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Deletion 26594 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Substitution 26535 29.53 31.00 32.71 -1.71 Before
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Insertion 26535 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Deletion 26535 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Substitution 26647 24.72 31.00 31.52 -0.52 Before
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Insertion 26647 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Deletion 26647 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Substitution 26551 27.81 31.00 31.27 -0.27 Before
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Insertion 26551 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Deletion 26551 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Substitution 26664 34.50 30.00 31.77 -1.77 Before
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Insertion 26664 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Deletion 26664 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Substitution 26539 35.20 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Insertion 26539 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Deletion 26539 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 3 Cycle Base Substitution 26892 47.06 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Substitution 26664 31.44 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Insertion 26662 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Deletion 26662 2.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Substitution 26670 29.21 31.00 32.11 -1.11 Before
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Insertion 26668 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Deletion 26668 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Substitution 26398 43.61 30.00 31.05 -1.05 Before
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Insertion 26396 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Deletion 26396 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Substitution 26477 28.67 31.00 31.50 -0.50 Before
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Insertion 26476 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Deletion 26476 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Substitution 26509 24.36 31.00 31.45 -0.45 Before
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Insertion 26509 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Deletion 26509 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Substitution 26484 29.82 31.00 31.73 -0.73 Before
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Insertion 26484 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Deletion 26484 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Substitution 26533 26.71 31.00 31.82 -0.82 Before
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Insertion 26533 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Deletion 26533 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Substitution 26475 23.25 31.00 31.90 -0.90 Before
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Insertion 26474 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Deletion 26474 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Substitution 26528 24.01 31.00 31.84 -0.84 Before
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Insertion 26526 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Deletion 26526 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Substitution 26461 25.33 31.00 31.90 -0.90 Before
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Insertion 26460 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Deletion 26460 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 4 Cycle Base Substitution 26909 61.34 29.00 31.02 -2.02 Before
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Substitution 26388 20.94 31.00 31.66 -0.66 Before
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Insertion 26386 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Deletion 26386 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Substitution 26523 25.55 31.00 31.46 -0.46 Before
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Insertion 26520 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Deletion 26520 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Substitution 26302 28.27 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Insertion 26301 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Deletion 26301 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Substitution 26402 37.09 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Insertion 26401 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Deletion 26401 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Substitution 26406 28.79 31.00 31.49 -0.49 Before
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Insertion 26406 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Deletion 26406 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Substitution 26412 32.69 30.00 31.66 -1.66 Before
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Insertion 26410 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Deletion 26410 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Substitution 26338 39.48 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Insertion 26334 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Deletion 26334 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Substitution 26405 31.95 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Insertion 26398 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Deletion 26398 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Substitution 26349 26.06 31.00 31.61 -0.61 Before
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Insertion 26340 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Deletion 26340 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Substitution 26410 31.63 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Insertion 26404 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Deletion 26404 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Substitution 26824 42.10 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Insertion 26824 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Deletion 26824 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Substitution 26299 27.83 31.00 31.84 -0.84 Before
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Insertion 26289 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Deletion 26289 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Substitution 26291 51.10 30.00 31.64 -1.64 Before
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Insertion 26280 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Deletion 26280 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Substitution 26330 31.46 31.00 31.57 -0.57 Before
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Insertion 26313 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Deletion 26313 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Substitution 26384 35.85 30.00 31.14 -1.14 Before
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Insertion 26361 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Deletion 26361 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Substitution 26275 33.18 30.00 31.90 -1.90 Before
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Insertion 26247 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Deletion 26247 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Substitution 26280 28.10 31.00 31.71 -0.71 Before
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Insertion 26249 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Deletion 26249 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Substitution 26393 40.18 30.00 31.68 -1.68 Before
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Insertion 26354 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Deletion 26354 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Substitution 26184 36.09 30.00 31.26 -1.26 Before
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Insertion 26151 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Deletion 26151 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Substitution 26222 33.64 30.00 31.86 -1.86 Before
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Insertion 26188 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Deletion 26188 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Substitution 26348 32.81 30.00 31.39 -1.39 Before
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Insertion 26305 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Deletion 26305 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Substitution 26892 30.74 31.00 31.03 -0.03 Before
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Insertion 26892 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Deletion 26892 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Substitution 26152 30.92 31.00 31.15 -0.15 Before
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Insertion 26102 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Deletion 26102 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Substitution 26221 46.65 30.00 31.67 -1.67 Before
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Insertion 26163 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Deletion 26163 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Substitution 26199 33.47 30.00 31.45 -1.45 Before
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Insertion 26138 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Deletion 26138 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Substitution 26160 41.93 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Insertion 26093 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Deletion 26093 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Substitution 26170 32.46 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Insertion 26096 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Deletion 26096 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Substitution 26146 35.70 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Insertion 26080 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Deletion 26080 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Substitution 26114 27.84 31.00 31.61 -0.61 Before
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Insertion 26031 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Deletion 26031 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Substitution 26053 35.51 30.00 31.40 -1.40 Before
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Insertion 25969 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Deletion 25969 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Substitution 26083 33.78 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Insertion 25998 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Deletion 25998 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Substitution 26197 29.14 31.00 31.41 -0.41 Before
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Insertion 26112 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Deletion 26112 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Substitution 26703 28.37 31.00 31.13 -0.13 Before
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Insertion 26703 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Deletion 26703 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Substitution 25925 36.37 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Insertion 25840 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Deletion 25840 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Substitution 25951 35.01 30.00 31.87 -1.87 Before
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Insertion 25850 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Deletion 25850 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Substitution 25957 26.61 31.00 31.44 -0.44 Before
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Insertion 25854 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Deletion 25854 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Substitution 25950 40.67 29.00 31.00 -2.00 Before
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Insertion 25832 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Deletion 25832 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Substitution 25831 36.82 30.00 31.32 -1.32 Before
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Insertion 25706 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Deletion 25706 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Substitution 25866 35.00 30.00 31.14 -1.14 Before
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Insertion 25741 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Deletion 25741 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Substitution 25842 39.57 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Insertion 25711 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Deletion 25711 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Substitution 25730 37.42 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Insertion 25599 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Deletion 25599 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Substitution 25730 40.83 29.00 30.98 -1.98 Before
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Insertion 25585 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Deletion 25585 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Substitution 25734 51.77 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Insertion 25583 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Deletion 25583 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Substitution 26717 39.70 30.00 31.03 -1.03 Before
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Insertion 26717 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Deletion 26717 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Substitution 25718 30.85 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Insertion 25548 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Deletion 25548 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Substitution 25553 34.63 30.00 30.87 -0.87 Before
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Insertion 25375 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Deletion 25375 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Substitution 25596 32.08 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Insertion 25417 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Deletion 25417 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Substitution 25486 34.37 30.00 30.89 -0.89 Before
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Insertion 25288 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Deletion 25288 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Substitution 25514 45.13 29.00 30.96 -1.96 Before
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Insertion 25316 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Deletion 25316 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Substitution 25425 41.60 30.00 31.18 -1.18 Before
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Insertion 25233 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Deletion 25233 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Substitution 25415 39.24 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Insertion 25230 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Deletion 25230 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Substitution 25380 34.97 30.00 30.69 -0.69 Before
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Insertion 25185 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Deletion 25185 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Substitution 25277 34.81 30.00 30.84 -0.84 Before
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Insertion 25077 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Deletion 25077 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Substitution 25286 43.95 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Insertion 25080 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Deletion 25080 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Substitution 26771 35.57 30.00 30.93 -0.93 Before
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Insertion 26771 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Deletion 26771 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Substitution 25233 42.77 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Insertion 25029 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Deletion 25029 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Substitution 25282 45.89 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Insertion 25081 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Deletion 25081 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Substitution 25036 34.21 30.00 30.75 -0.75 Before
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Insertion 24812 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Deletion 24812 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Substitution 24881 41.94 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Insertion 24657 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Deletion 24657 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Substitution 25021 43.99 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Insertion 24787 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Deletion 24787 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Substitution 24850 26.68 30.00 30.91 -0.91 Before
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Insertion 24593 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Deletion 24593 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Substitution 24794 39.37 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Insertion 24536 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Deletion 24536 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Substitution 24775 39.86 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Insertion 24524 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Deletion 24524 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Substitution 24725 40.46 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Insertion 24481 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Deletion 24481 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Substitution 24681 45.63 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Insertion 24443 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Deletion 24443 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 12 QualityScore Base Substitution 80107 7732.55 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L006 24 QualityScore Base Substitution 196272 735.44 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 40 QualityScore Base Substitution 7226980 5427.94 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L006 45 QualityScore Base Insertion 7503359 127.44 47.00 45.00 2.00 Before
REGRESSION.HCC1395_tumor.L006 45 QualityScore Base Deletion 7503359 355.42 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L007 AA Context Base Substitution 525729 1307.89 26.00 29.74 -3.74 Before
REGRESSION.HCC1395_tumor.L007 AAA Context Base Insertion 178084 22.53 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L007 AAA Context Base Deletion 178084 64.31 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L007 AAC Context Base Insertion 86227 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AAC Context Base Deletion 86227 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AAG Context Base Insertion 133741 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AAG Context Base Deletion 133741 4.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AAT Context Base Insertion 102304 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AAT Context Base Deletion 102304 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AC Context Base Substitution 358696 1194.15 25.00 28.60 -3.60 Before
REGRESSION.HCC1395_tumor.L007 ACA Context Base Insertion 132700 4.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACA Context Base Deletion 132700 4.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACC Context Base Insertion 105301 2.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACC Context Base Deletion 105301 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACG Context Base Insertion 20986 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACG Context Base Deletion 20986 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACT Context Base Insertion 105570 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACT Context Base Deletion 105570 6.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AG Context Base Substitution 561597 583.96 30.00 31.82 -1.82 Before
REGRESSION.HCC1395_tumor.L007 AGA Context Base Insertion 151971 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGA Context Base Deletion 151971 4.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGC Context Base Insertion 140039 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGC Context Base Deletion 140039 5.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGG Context Base Insertion 163282 4.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGG Context Base Deletion 163282 4.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGT Context Base Insertion 102494 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGT Context Base Deletion 102494 2.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AT Context Base Substitution 372161 465.78 29.00 32.09 -3.09 Before
REGRESSION.HCC1395_tumor.L007 ATA Context Base Insertion 75474 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATA Context Base Deletion 75474 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATC Context Base Insertion 79250 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATC Context Base Deletion 79250 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATG Context Base Insertion 115442 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATG Context Base Deletion 115442 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATT Context Base Insertion 110004 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATT Context Base Deletion 110004 2.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CA Context Base Substitution 595135 1284.01 27.00 29.87 -2.87 Before
REGRESSION.HCC1395_tumor.L007 CAA Context Base Insertion 112411 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAA Context Base Deletion 112411 3.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAC Context Base Insertion 125115 4.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAC Context Base Deletion 125115 4.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAG Context Base Insertion 213537 3.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAG Context Base Deletion 213537 10.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAT Context Base Insertion 112025 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAT Context Base Deletion 112025 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CC Context Base Substitution 552787 1734.77 25.00 28.90 -3.90 Before
REGRESSION.HCC1395_tumor.L007 CCA Context Base Insertion 176069 2.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCA Context Base Deletion 176069 2.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCC Context Base Insertion 151583 4.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCC Context Base Deletion 151583 9.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCG Context Base Insertion 38081 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCG Context Base Deletion 38081 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCT Context Base Insertion 178215 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCT Context Base Deletion 178215 6.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CG Context Base Substitution 114960 346.41 26.00 29.88 -3.88 Before
REGRESSION.HCC1395_tumor.L007 CGA Context Base Insertion 44860 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGA Context Base Deletion 44860 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGC Context Base Insertion 64124 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGC Context Base Deletion 64124 2.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGG Context Base Insertion 78371 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGG Context Base Deletion 78371 3.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGT Context Base Insertion 49460 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGT Context Base Deletion 49460 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CT Context Base Substitution 598434 410.78 32.00 32.56 -0.56 Before
REGRESSION.HCC1395_tumor.L007 CTA Context Base Insertion 58736 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTA Context Base Deletion 58736 4.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTC Context Base Insertion 147007 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTC Context Base Deletion 147007 9.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTG Context Base Insertion 214557 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTG Context Base Deletion 214557 6.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTT Context Base Insertion 146301 6.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTT Context Base Deletion 146301 5.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GA Context Base Substitution 497444 843.78 28.00 29.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 GAA Context Base Insertion 142175 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAA Context Base Deletion 142175 2.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAC Context Base Insertion 84319 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAC Context Base Deletion 84319 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAG Context Base Insertion 149787 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAG Context Base Deletion 149787 3.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAT Context Base Insertion 83978 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAT Context Base Deletion 83978 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GC Context Base Substitution 489127 1132.05 27.00 30.28 -3.28 Before
REGRESSION.HCC1395_tumor.L007 GCA Context Base Insertion 148621 3.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCA Context Base Deletion 148621 2.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCC Context Base Insertion 146740 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCC Context Base Deletion 146740 7.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCG Context Base Insertion 36682 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCG Context Base Deletion 36682 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCT Context Base Insertion 156315 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCT Context Base Deletion 156315 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GG Context Base Substitution 578128 772.85 29.00 31.73 -2.73 Before
REGRESSION.HCC1395_tumor.L007 GGA Context Base Insertion 156695 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGA Context Base Deletion 156695 5.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGC Context Base Insertion 145030 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGC Context Base Deletion 145030 4.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGG Context Base Insertion 158506 6.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGG Context Base Deletion 158506 9.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGT Context Base Insertion 115600 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGT Context Base Deletion 115600 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GT Context Base Substitution 409079 674.72 28.00 32.11 -4.11 Before
REGRESSION.HCC1395_tumor.L007 GTA Context Base Insertion 66402 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTA Context Base Deletion 66402 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTC Context Base Insertion 91462 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTC Context Base Deletion 91462 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTG Context Base Insertion 140186 3.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTG Context Base Deletion 140186 4.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTT Context Base Insertion 100240 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTT Context Base Deletion 100240 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TA Context Base Substitution 290906 834.66 26.00 29.70 -3.70 Before
REGRESSION.HCC1395_tumor.L007 TAA Context Base Insertion 88605 2.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAA Context Base Deletion 88605 4.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAC Context Base Insertion 60677 0.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAC Context Base Deletion 60677 4.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAG Context Base Insertion 60244 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAG Context Base Deletion 60244 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAT Context Base Insertion 71097 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAT Context Base Deletion 71097 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TC Context Base Substitution 451210 1010.94 27.00 30.48 -3.48 Before
REGRESSION.HCC1395_tumor.L007 TCA Context Base Insertion 133050 2.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCA Context Base Deletion 133050 5.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCC Context Base Insertion 145428 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCC Context Base Deletion 145428 2.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCG Context Base Insertion 18366 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCG Context Base Deletion 18366 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCT Context Base Insertion 154350 2.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCT Context Base Deletion 154350 9.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TG Context Base Substitution 588327 459.49 31.00 31.82 -0.82 Before
REGRESSION.HCC1395_tumor.L007 TGA Context Base Insertion 140049 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGA Context Base Deletion 140049 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGC Context Base Insertion 136803 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGC Context Base Deletion 136803 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGG Context Base Insertion 173603 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGG Context Base Deletion 173603 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGT Context Base Insertion 138732 2.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGT Context Base Deletion 138732 4.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TT Context Base Substitution 540859 685.29 29.00 32.96 -3.96 Before
REGRESSION.HCC1395_tumor.L007 TTA Context Base Insertion 88052 3.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTA Context Base Deletion 88052 3.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTC Context Base Insertion 130832 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTC Context Base Deletion 130832 5.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTG Context Base Insertion 113873 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTG Context Base Deletion 113873 2.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTT Context Base Insertion 180677 19.17 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L007 TTT Context Base Deletion 180677 58.44 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L007 -1 Cycle Base Substitution 26794 97.87 25.00 25.85 -0.85 Before
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Substitution 27066 41.09 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Insertion 27066 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Deletion 27066 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Substitution 24965 34.68 30.00 30.34 -0.34 Before
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Insertion 24717 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Deletion 24717 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Substitution 24790 47.31 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Insertion 24544 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Deletion 24544 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Substitution 24840 39.81 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Insertion 24579 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Deletion 24579 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Substitution 24752 43.34 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Insertion 24513 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Deletion 24513 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Substitution 24806 33.96 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Insertion 24538 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Deletion 24538 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Substitution 24659 46.01 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Insertion 24378 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Deletion 24378 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Substitution 24577 44.67 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Insertion 24288 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Deletion 24288 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Substitution 24547 30.95 30.00 30.31 -0.31 Before
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Insertion 24252 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Deletion 24252 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Substitution 24520 34.50 30.00 30.29 -0.29 Before
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Insertion 24237 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Deletion 24237 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Substitution 24392 45.47 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Insertion 24107 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Deletion 24107 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Substitution 26970 39.48 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Insertion 26970 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Deletion 26970 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Substitution 24322 40.38 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Insertion 24050 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Deletion 24050 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Substitution 24212 37.64 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Insertion 23943 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Deletion 23943 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Substitution 24284 43.53 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Insertion 24001 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Deletion 24001 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Substitution 24189 54.15 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Insertion 23910 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Deletion 23910 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Substitution 24120 53.16 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Insertion 23834 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Deletion 23834 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Substitution 24013 51.94 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Insertion 23713 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Deletion 23713 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Substitution 23945 45.56 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Insertion 23646 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Deletion 23646 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Substitution 23765 53.53 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Insertion 23485 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Deletion 23485 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Substitution 23741 51.19 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Insertion 23440 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Deletion 23440 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Substitution 23662 58.22 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Insertion 23385 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Deletion 23385 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Substitution 27095 34.27 30.00 31.84 -1.84 Before
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Insertion 27095 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Deletion 27095 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Substitution 23613 57.94 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Insertion 23323 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Deletion 23323 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Substitution 23415 51.94 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Insertion 23114 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Deletion 23114 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Substitution 23528 44.35 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Insertion 23235 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Deletion 23235 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Substitution 23533 45.35 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Insertion 23216 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Deletion 23216 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Substitution 23434 45.15 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Insertion 23115 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Deletion 23115 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Substitution 23273 38.91 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Insertion 22963 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Deletion 22963 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Substitution 23239 43.90 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Insertion 22942 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Deletion 22942 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Substitution 23180 56.00 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Insertion 22865 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Deletion 22865 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Substitution 23176 43.83 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Insertion 22866 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Deletion 22866 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Substitution 23058 35.73 29.00 29.93 -0.93 Before
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Insertion 22735 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Deletion 22735 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Substitution 26959 41.43 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Insertion 26959 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Deletion 26959 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Substitution 23001 55.71 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Insertion 22661 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Deletion 22661 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Substitution 23024 43.78 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Insertion 22676 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Deletion 22676 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Substitution 22852 43.02 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Insertion 22503 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Deletion 22503 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Substitution 22870 43.91 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Insertion 22543 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Deletion 22543 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Substitution 22718 47.03 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Insertion 22376 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Deletion 22376 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Substitution 22669 44.02 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Insertion 22350 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Deletion 22350 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Substitution 22562 46.08 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Insertion 22231 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Deletion 22231 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Substitution 22513 52.13 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Insertion 22172 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Deletion 22172 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Substitution 22440 41.35 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Insertion 22104 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Deletion 22104 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Substitution 22275 40.23 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Insertion 21910 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Deletion 21910 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Substitution 26998 53.75 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Insertion 26998 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Deletion 26998 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Substitution 22241 47.07 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Insertion 21883 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Deletion 21883 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Substitution 22260 40.26 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Insertion 21891 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Deletion 21891 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Substitution 22102 37.73 29.00 29.88 -0.88 Before
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Insertion 21705 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Deletion 21705 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Substitution 21961 29.04 29.00 29.77 -0.77 Before
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Insertion 21548 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Deletion 21548 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Substitution 21959 29.34 29.00 29.57 -0.57 Before
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Insertion 21485 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Deletion 21485 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Substitution 21849 41.62 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Insertion 16823 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Deletion 16823 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Substitution 21639 67.53 28.00 30.10 -2.10 Before
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Insertion 16677 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Deletion 16677 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -147 Cycle Base Substitution 21643 232.47 23.00 29.88 -6.88 Before
REGRESSION.HCC1395_tumor.L007 -148 Cycle Base Substitution 21501 824.53 16.00 29.87 -13.87 Before
REGRESSION.HCC1395_tumor.L007 -149 Cycle Base Substitution 13325 753.04 14.00 30.68 -16.68 Before
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Substitution 27007 41.60 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Insertion 27007 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Deletion 27007 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -150 Cycle Base Substitution 4705 7.61 30.00 30.68 -0.68 Before
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Substitution 27094 39.00 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Insertion 27094 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Deletion 27094 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Substitution 27004 43.58 30.00 31.99 -1.99 Before
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Insertion 27004 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Deletion 27004 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Substitution 27053 36.16 30.00 31.85 -1.85 Before
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Insertion 27053 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Deletion 27053 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Substitution 27095 46.52 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Insertion 27095 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Deletion 27095 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -2 Cycle Base Substitution 27047 70.41 27.00 28.67 -1.67 Before
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Substitution 27031 35.42 31.00 32.02 -1.02 Before
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Insertion 27031 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Deletion 27031 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Substitution 26901 37.14 30.00 31.96 -1.96 Before
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Insertion 26901 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Deletion 26901 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Substitution 26924 33.99 30.00 31.94 -1.94 Before
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Insertion 26924 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Deletion 26924 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Substitution 27047 39.69 30.00 31.62 -1.62 Before
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Insertion 27047 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Deletion 27047 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Substitution 26879 35.38 30.00 31.70 -1.70 Before
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Insertion 26879 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Deletion 26879 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Substitution 26944 41.04 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Insertion 26944 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Deletion 26944 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Substitution 26868 46.02 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Insertion 26868 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Deletion 26868 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Substitution 26892 39.82 29.00 29.97 -0.97 Before
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Insertion 26891 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Deletion 26891 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Substitution 26832 44.19 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Insertion 26830 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Deletion 26830 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Substitution 27013 35.70 30.00 30.25 -0.25 Before
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Insertion 27010 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Deletion 27010 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -3 Cycle Base Substitution 27194 67.89 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Substitution 26835 40.47 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Insertion 26831 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Deletion 26831 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Substitution 26736 44.85 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Insertion 26732 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Deletion 26732 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Substitution 26815 31.81 30.00 30.50 -0.50 Before
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Insertion 26812 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Deletion 26812 2.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Substitution 26857 48.42 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Insertion 26854 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Deletion 26854 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Substitution 26807 29.64 30.00 30.37 -0.37 Before
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Insertion 26806 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Deletion 26806 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Substitution 26889 44.01 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Insertion 26888 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Deletion 26888 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Substitution 26928 36.60 30.00 30.15 -0.15 Before
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Insertion 26926 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Deletion 26926 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Substitution 26860 36.28 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Insertion 26859 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Deletion 26859 2.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Substitution 26767 44.65 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Insertion 26765 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Deletion 26765 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Substitution 26821 40.00 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Insertion 26819 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Deletion 26819 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -4 Cycle Base Substitution 27106 81.12 27.00 29.93 -2.93 Before
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Substitution 26789 30.93 30.00 30.29 -0.29 Before
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Insertion 26787 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Deletion 26787 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Substitution 26823 30.76 30.00 30.40 -0.40 Before
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Insertion 26820 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Deletion 26820 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Substitution 26867 29.90 30.00 30.51 -0.51 Before
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Insertion 26863 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Deletion 26863 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Substitution 26743 47.84 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Insertion 26737 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Deletion 26737 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Substitution 26826 30.03 30.00 30.59 -0.59 Before
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Insertion 26824 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Deletion 26824 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Substitution 26781 36.06 30.00 30.37 -0.37 Before
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Insertion 26774 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Deletion 26774 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Substitution 26761 36.92 30.00 30.13 -0.13 Before
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Insertion 26756 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Deletion 26756 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Substitution 26786 43.43 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Insertion 26778 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Deletion 26778 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Substitution 26748 39.86 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Insertion 26737 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Deletion 26737 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Substitution 26674 33.84 30.00 30.58 -0.58 Before
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Insertion 26666 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Deletion 26666 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Substitution 27231 47.51 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Insertion 27231 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Deletion 27231 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Substitution 26722 37.99 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Insertion 26704 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Deletion 26704 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Substitution 26691 43.56 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Insertion 26668 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Deletion 26668 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Substitution 26533 39.47 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Insertion 26507 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Deletion 26507 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Substitution 26568 39.27 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Insertion 26540 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Deletion 26540 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Substitution 26656 49.79 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Insertion 26624 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Deletion 26624 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Substitution 26714 41.57 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Insertion 26674 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Deletion 26674 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Substitution 26690 45.45 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Insertion 26657 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Deletion 26657 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Substitution 26544 39.26 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Insertion 26491 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Deletion 26491 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Substitution 26556 34.73 30.00 30.79 -0.79 Before
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Insertion 26510 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Deletion 26510 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Substitution 26616 46.96 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Insertion 26569 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Deletion 26569 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Substitution 27075 45.63 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Insertion 27075 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Deletion 27075 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Substitution 26549 51.86 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Insertion 26488 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Deletion 26488 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Substitution 26431 38.10 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Insertion 26383 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Deletion 26383 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Substitution 26473 42.87 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Insertion 26420 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Deletion 26420 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Substitution 26383 33.61 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Insertion 26330 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Deletion 26330 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Substitution 26394 40.23 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Insertion 26337 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Deletion 26337 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Substitution 26348 37.07 30.00 30.75 -0.75 Before
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Insertion 26270 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Deletion 26270 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Substitution 26426 39.00 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Insertion 26345 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Deletion 26345 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Substitution 26477 47.07 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Insertion 26391 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Deletion 26391 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Substitution 26461 36.55 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Insertion 26371 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Deletion 26371 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Substitution 26398 40.58 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Insertion 26309 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Deletion 26309 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Substitution 27003 51.13 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Insertion 27003 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Deletion 27003 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Substitution 26263 34.24 30.00 30.44 -0.44 Before
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Insertion 26167 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Deletion 26167 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Substitution 26211 39.29 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Insertion 26124 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Deletion 26124 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Substitution 26154 47.02 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Insertion 26048 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Deletion 26048 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Substitution 26242 44.18 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Insertion 26124 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Deletion 26124 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Substitution 26099 40.08 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Insertion 25975 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Deletion 25975 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Substitution 26158 44.48 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Insertion 26035 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Deletion 26035 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Substitution 26088 40.17 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Insertion 25966 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Deletion 25966 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Substitution 26072 37.20 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Insertion 25950 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Deletion 25950 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Substitution 25968 41.74 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Insertion 25831 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Deletion 25831 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Substitution 25966 53.52 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Insertion 25827 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Deletion 25827 2.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Substitution 27113 37.48 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Insertion 27113 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Deletion 27113 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Substitution 25952 38.02 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Insertion 25798 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Deletion 25798 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Substitution 25916 41.35 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Insertion 25764 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Deletion 25764 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Substitution 25881 38.78 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Insertion 25696 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Deletion 25696 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Substitution 25853 41.18 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Insertion 25674 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Deletion 25674 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Substitution 25749 48.57 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Insertion 25571 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Deletion 25571 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Substitution 25835 43.04 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Insertion 25655 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Deletion 25655 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Substitution 25813 36.36 30.00 30.79 -0.79 Before
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Insertion 25639 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Deletion 25639 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Substitution 25581 45.47 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Insertion 25409 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Deletion 25409 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Substitution 25674 45.90 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Insertion 25475 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Deletion 25475 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Substitution 25717 59.89 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Insertion 25510 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Deletion 25510 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Substitution 26973 44.89 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Insertion 26973 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Deletion 26973 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Substitution 25623 38.12 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Insertion 25405 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Deletion 25405 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Substitution 25487 47.22 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Insertion 25244 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Deletion 25244 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Substitution 25452 45.65 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Insertion 25220 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Deletion 25220 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Substitution 25391 38.23 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Insertion 25157 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Deletion 25157 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Substitution 25340 47.47 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Insertion 25123 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Deletion 25123 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Substitution 25288 51.97 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Insertion 25077 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Deletion 25077 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Substitution 25354 55.56 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Insertion 25138 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Deletion 25138 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Substitution 25155 45.35 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Insertion 24948 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Deletion 24948 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Substitution 25063 40.70 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Insertion 24841 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Deletion 24841 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Substitution 25030 46.34 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Insertion 24790 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Deletion 24790 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 1 Cycle Base Substitution 26614 59.28 27.00 28.88 -1.88 Before
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Substitution 26979 31.23 31.00 31.26 -0.26 Before
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Insertion 26979 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Deletion 26979 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Substitution 24851 22.76 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Insertion 24605 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Deletion 24605 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Substitution 24824 39.26 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Insertion 24577 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Deletion 24577 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Substitution 24795 41.61 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Insertion 24541 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Deletion 24541 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Substitution 24709 44.63 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Insertion 24462 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Deletion 24462 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Substitution 24742 42.07 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Insertion 24480 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Deletion 24480 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Substitution 24604 34.11 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Insertion 24337 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Deletion 24337 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Substitution 24542 47.53 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Insertion 24269 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Deletion 24269 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Substitution 24427 49.10 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Insertion 24138 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Deletion 24138 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Substitution 24410 44.57 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Insertion 24130 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Deletion 24130 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Substitution 24316 44.41 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Insertion 24034 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Deletion 24034 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Substitution 27023 30.64 31.00 31.41 -0.41 Before
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Insertion 27023 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Deletion 27023 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Substitution 24138 37.77 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Insertion 23877 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Deletion 23877 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Substitution 24241 35.72 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Insertion 23973 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Deletion 23973 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Substitution 24134 45.79 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Insertion 23857 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Deletion 23857 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Substitution 24143 39.42 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Insertion 23862 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Deletion 23862 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Substitution 23986 45.22 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Insertion 23713 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Deletion 23713 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Substitution 23998 36.59 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Insertion 23694 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Deletion 23694 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Substitution 23935 39.82 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Insertion 23629 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Deletion 23629 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Substitution 23806 33.66 30.00 30.41 -0.41 Before
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Insertion 23504 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Deletion 23504 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Substitution 23777 49.36 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Insertion 23480 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Deletion 23480 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Substitution 23834 47.73 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Insertion 23547 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Deletion 23547 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Substitution 26895 32.65 30.00 31.27 -1.27 Before
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Insertion 26895 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Deletion 26895 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Substitution 23676 41.25 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Insertion 23386 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Deletion 23386 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Substitution 23528 33.98 30.00 30.05 -0.05 Before
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Insertion 23222 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Deletion 23222 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Substitution 23595 54.14 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Insertion 23300 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Deletion 23300 1.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Substitution 23440 36.89 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Insertion 23137 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Deletion 23137 1.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Substitution 23319 37.65 29.00 29.79 -0.79 Before
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Insertion 23022 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Deletion 23022 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Substitution 23334 51.28 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Insertion 23022 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Deletion 23022 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Substitution 23256 37.12 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Insertion 22966 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Deletion 22966 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Substitution 23132 53.61 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Insertion 22827 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Deletion 22827 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Substitution 22906 49.15 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Insertion 22615 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Deletion 22615 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Substitution 22922 50.93 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Insertion 22621 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Deletion 22621 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Substitution 26888 33.72 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Insertion 26888 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Deletion 26888 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Substitution 22954 50.20 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Insertion 22628 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Deletion 22628 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Substitution 22918 53.50 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Insertion 22569 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Deletion 22569 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Substitution 22888 39.93 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Insertion 22555 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Deletion 22555 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Substitution 22675 47.13 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Insertion 22347 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Deletion 22347 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Substitution 22651 37.86 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Insertion 22344 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Deletion 22344 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Substitution 22533 49.96 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Insertion 22239 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Deletion 22239 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Substitution 22426 50.56 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Insertion 22113 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Deletion 22113 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Substitution 22498 52.77 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Insertion 22171 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Deletion 22171 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Substitution 22386 35.75 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Insertion 22081 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Deletion 22081 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Substitution 22375 52.16 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Insertion 22028 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Deletion 22028 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Substitution 26877 29.22 31.00 31.41 -0.41 Before
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Insertion 26877 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Deletion 26877 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Substitution 22290 41.14 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Insertion 21971 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Deletion 21971 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Substitution 22198 42.54 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Insertion 21879 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Deletion 21879 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Substitution 22010 41.73 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Insertion 21648 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Deletion 21648 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Substitution 22095 41.66 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Insertion 21775 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Deletion 21775 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Substitution 22000 47.36 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Insertion 21641 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Deletion 21641 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Substitution 21803 38.87 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Insertion 21427 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Deletion 21427 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Substitution 21823 48.25 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Insertion 21475 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Deletion 21475 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 147 Cycle Base Substitution 21700 45.09 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L007 148 Cycle Base Substitution 21613 46.97 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L007 149 Cycle Base Substitution 21420 50.31 28.00 29.61 -1.61 Before
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Substitution 26790 28.05 31.00 31.40 -0.40 Before
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Insertion 26790 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Deletion 26790 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 150 Cycle Base Substitution 21360 42.48 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Substitution 26788 20.33 32.00 32.85 -0.85 Before
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Insertion 26788 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Deletion 26788 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Substitution 26792 31.16 31.00 32.49 -1.49 Before
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Insertion 26792 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Deletion 26792 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Substitution 26771 23.05 32.00 32.98 -0.98 Before
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Insertion 26771 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Deletion 26771 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Substitution 26965 20.39 33.00 33.08 -0.08 Before
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Insertion 26965 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Deletion 26965 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 2 Cycle Base Substitution 27040 49.01 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Substitution 26907 20.11 32.00 32.66 -0.66 Before
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Insertion 26907 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Deletion 26907 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Substitution 26842 29.34 31.00 32.62 -1.62 Before
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Insertion 26842 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Deletion 26842 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Substitution 26782 21.11 32.00 32.98 -0.98 Before
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Insertion 26782 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Deletion 26782 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Substitution 26820 20.12 33.00 33.08 -0.08 Before
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Insertion 26820 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Deletion 26820 2.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Substitution 26692 19.08 33.00 33.04 -0.04 Before
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Insertion 26692 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Deletion 26692 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Substitution 26650 23.12 32.00 33.08 -1.08 Before
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Insertion 26650 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Deletion 26650 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Substitution 26742 27.69 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Insertion 26742 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Deletion 26742 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Substitution 26706 33.75 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Insertion 26706 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Deletion 26706 2.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Substitution 26733 30.32 31.00 31.54 -0.54 Before
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Insertion 26733 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Deletion 26733 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Substitution 26777 26.25 31.00 31.37 -0.37 Before
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Insertion 26777 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Deletion 26777 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 3 Cycle Base Substitution 26924 57.56 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Substitution 26692 28.14 31.00 31.53 -0.53 Before
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Insertion 26692 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Deletion 26692 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Substitution 26742 30.71 31.00 31.46 -0.46 Before
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Insertion 26741 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Deletion 26741 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Substitution 26712 41.08 30.00 31.81 -1.81 Before
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Insertion 26712 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Deletion 26712 1.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Substitution 26785 38.53 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Insertion 26784 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Deletion 26784 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Substitution 26766 29.06 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Insertion 26766 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Deletion 26766 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Substitution 26596 41.10 30.00 31.80 -1.80 Before
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Insertion 26596 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Deletion 26596 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Substitution 26684 35.20 30.00 31.58 -1.58 Before
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Insertion 26683 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Deletion 26683 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Substitution 26775 32.16 30.00 31.72 -1.72 Before
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Insertion 26774 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Deletion 26774 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Substitution 26682 29.54 31.00 31.89 -0.89 Before
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Insertion 26681 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Deletion 26681 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Substitution 26516 34.65 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Insertion 26515 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Deletion 26515 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 4 Cycle Base Substitution 26966 65.88 28.00 30.92 -2.92 Before
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Substitution 26601 33.27 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Insertion 26599 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Deletion 26599 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Substitution 26642 33.88 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Insertion 26640 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Deletion 26640 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Substitution 26585 38.74 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Insertion 26581 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Deletion 26581 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Substitution 26605 34.43 30.00 31.56 -1.56 Before
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Insertion 26601 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Deletion 26601 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Substitution 26465 31.02 31.00 31.37 -0.37 Before
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Insertion 26461 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Deletion 26461 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Substitution 26485 37.99 30.00 31.70 -1.70 Before
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Insertion 26480 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Deletion 26480 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Substitution 26614 31.79 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Insertion 26609 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Deletion 26609 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Substitution 26518 40.13 30.00 31.24 -1.24 Before
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Insertion 26512 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Deletion 26512 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Substitution 26512 34.56 30.00 31.33 -1.33 Before
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Insertion 26503 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Deletion 26503 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Substitution 26529 35.09 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Insertion 26522 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Deletion 26522 2.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Substitution 26947 37.74 30.00 31.48 -1.48 Before
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Insertion 26947 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Deletion 26947 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Substitution 26549 34.88 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Insertion 26537 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Deletion 26537 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Substitution 26512 40.13 30.00 31.85 -1.85 Before
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Insertion 26495 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Deletion 26495 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Substitution 26504 30.93 31.00 31.41 -0.41 Before
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Insertion 26479 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Deletion 26479 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Substitution 26442 29.13 31.00 31.52 -0.52 Before
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Insertion 26413 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Deletion 26413 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Substitution 26384 36.12 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Insertion 26352 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Deletion 26352 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Substitution 26510 31.16 31.00 31.42 -0.42 Before
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Insertion 26475 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Deletion 26475 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Substitution 26471 40.47 30.00 31.32 -1.32 Before
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Insertion 26443 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Deletion 26443 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Substitution 26492 42.98 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Insertion 26444 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Deletion 26444 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Substitution 26421 33.18 30.00 31.84 -1.84 Before
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Insertion 26375 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Deletion 26375 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Substitution 26425 31.87 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Insertion 26382 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Deletion 26382 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Substitution 26946 34.67 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Insertion 26946 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Deletion 26946 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Substitution 26399 38.62 30.00 31.66 -1.66 Before
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Insertion 26344 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Deletion 26344 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Substitution 26426 30.22 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Insertion 26378 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Deletion 26378 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Substitution 26386 28.27 31.00 31.56 -0.56 Before
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Insertion 26328 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Deletion 26328 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Substitution 26330 40.86 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Insertion 26270 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Deletion 26270 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Substitution 26419 29.18 31.00 31.22 -0.22 Before
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Insertion 26358 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Deletion 26358 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Substitution 26435 35.58 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Insertion 26360 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Deletion 26360 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Substitution 26217 40.44 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Insertion 26140 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Deletion 26140 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Substitution 26269 39.64 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Insertion 26182 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Deletion 26182 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Substitution 26289 40.93 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Insertion 26187 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Deletion 26187 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Substitution 26148 36.99 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Insertion 26056 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Deletion 26056 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Substitution 26773 40.66 30.00 31.04 -1.04 Before
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Insertion 26773 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Deletion 26773 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Substitution 26241 30.18 31.00 31.39 -0.39 Before
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Insertion 26145 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Deletion 26145 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Substitution 26117 42.57 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Insertion 26015 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Deletion 26015 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Substitution 26093 35.64 30.00 31.38 -1.38 Before
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Insertion 25979 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Deletion 25979 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Substitution 26081 42.02 29.00 30.95 -1.95 Before
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Insertion 25967 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Deletion 25967 2.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Substitution 26043 37.14 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Insertion 25920 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Deletion 25920 2.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Substitution 26107 33.54 30.00 31.03 -1.03 Before
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Insertion 25965 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Deletion 25965 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Substitution 25949 37.21 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Insertion 25828 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Deletion 25828 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Substitution 25970 39.06 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Insertion 25841 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Deletion 25841 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Substitution 25877 19.86 31.00 30.84 0.16 Before
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Insertion 25746 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Deletion 25746 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Substitution 25715 30.59 30.00 30.98 -0.98 Before
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Insertion 25577 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Deletion 25577 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Substitution 26965 41.50 30.00 31.05 -1.05 Before
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Insertion 26965 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Deletion 26965 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Substitution 25780 48.50 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Insertion 25623 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Deletion 25623 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Substitution 25732 38.48 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Insertion 25581 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Deletion 25581 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Substitution 25707 36.30 30.00 30.95 -0.95 Before
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Insertion 25533 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Deletion 25533 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Substitution 25589 34.74 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Insertion 25415 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Deletion 25415 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Substitution 25599 40.35 29.00 30.97 -1.97 Before
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Insertion 25427 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Deletion 25427 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Substitution 25655 37.55 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Insertion 25472 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Deletion 25472 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Substitution 25626 40.67 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Insertion 25448 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Deletion 25448 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Substitution 25563 44.40 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Insertion 25385 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Deletion 25385 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Substitution 25605 32.08 30.00 30.85 -0.85 Before
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Insertion 25416 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Deletion 25416 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Substitution 25396 49.55 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Insertion 25192 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Deletion 25192 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Substitution 26917 34.83 30.00 31.03 -1.03 Before
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Insertion 26917 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Deletion 26917 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Substitution 25375 40.47 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Insertion 25148 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Deletion 25148 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Substitution 25240 32.39 30.00 30.84 -0.84 Before
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Insertion 24996 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Deletion 24996 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Substitution 25366 36.80 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Insertion 25126 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Deletion 25126 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Substitution 25288 40.10 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Insertion 25063 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Deletion 25063 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Substitution 25187 36.22 30.00 30.76 -0.76 Before
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Insertion 24966 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Deletion 24966 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Substitution 25111 39.30 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Insertion 24892 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Deletion 24892 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Substitution 25103 39.12 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Insertion 24879 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Deletion 24879 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Substitution 25010 49.92 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Insertion 24786 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Deletion 24786 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Substitution 25019 55.78 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Insertion 24795 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Deletion 24795 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Substitution 24892 32.12 30.00 30.80 -0.80 Before
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Insertion 24655 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Deletion 24655 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 12 QualityScore Base Substitution 80008 7808.93 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L007 24 QualityScore Base Substitution 196175 759.14 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 40 QualityScore Base Substitution 7301819 5331.19 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L007 45 QualityScore Base Insertion 7578002 133.89 47.00 45.00 2.00 Before
REGRESSION.HCC1395_tumor.L007 45 QualityScore Base Deletion 7578002 341.03 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L008 AA Context Base Substitution 522554 1337.19 26.00 29.50 -3.50 Before
REGRESSION.HCC1395_tumor.L008 AAA Context Base Insertion 177130 21.32 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L008 AAA Context Base Deletion 177130 70.41 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L008 AAC Context Base Insertion 85144 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AAC Context Base Deletion 85144 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AAG Context Base Insertion 134076 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AAG Context Base Deletion 134076 5.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AAT Context Base Insertion 101492 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AAT Context Base Deletion 101492 2.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AC Context Base Substitution 356166 1194.43 25.00 28.67 -3.67 Before
REGRESSION.HCC1395_tumor.L008 ACA Context Base Insertion 131318 4.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACA Context Base Deletion 131318 6.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACC Context Base Insertion 104602 3.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACC Context Base Deletion 104602 2.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACG Context Base Insertion 20908 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACG Context Base Deletion 20908 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACT Context Base Insertion 104739 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACT Context Base Deletion 104739 4.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AG Context Base Substitution 559616 558.24 30.00 31.72 -1.72 Before
REGRESSION.HCC1395_tumor.L008 AGA Context Base Insertion 151288 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGA Context Base Deletion 151288 6.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGC Context Base Insertion 139532 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGC Context Base Deletion 139532 4.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGG Context Base Insertion 162907 9.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGG Context Base Deletion 162907 4.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGT Context Base Insertion 102401 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGT Context Base Deletion 102401 5.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AT Context Base Substitution 369756 483.90 29.00 32.00 -3.00 Before
REGRESSION.HCC1395_tumor.L008 ATA Context Base Insertion 74612 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATA Context Base Deletion 74612 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATC Context Base Insertion 79091 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATC Context Base Deletion 79091 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATG Context Base Insertion 114937 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATG Context Base Deletion 114937 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATT Context Base Insertion 108842 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATT Context Base Deletion 108842 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CA Context Base Substitution 592406 1289.07 27.00 29.88 -2.88 Before
REGRESSION.HCC1395_tumor.L008 CAA Context Base Insertion 112270 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAA Context Base Deletion 112270 4.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAC Context Base Insertion 125187 7.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAC Context Base Deletion 125187 6.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAG Context Base Insertion 211667 4.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAG Context Base Deletion 211667 11.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAT Context Base Insertion 111403 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAT Context Base Deletion 111403 3.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CC Context Base Substitution 553218 1742.21 25.00 28.89 -3.89 Before
REGRESSION.HCC1395_tumor.L008 CCA Context Base Insertion 176513 3.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCA Context Base Deletion 176513 2.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCC Context Base Insertion 152392 4.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCC Context Base Deletion 152392 9.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCG Context Base Insertion 37704 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCG Context Base Deletion 37704 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCT Context Base Insertion 178170 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCT Context Base Deletion 178170 6.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CG Context Base Substitution 114657 337.93 26.00 29.80 -3.80 Before
REGRESSION.HCC1395_tumor.L008 CGA Context Base Insertion 44463 4.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGA Context Base Deletion 44463 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGC Context Base Insertion 63703 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGC Context Base Deletion 63703 2.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGG Context Base Insertion 76977 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGG Context Base Deletion 76977 2.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGT Context Base Insertion 49235 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGT Context Base Deletion 49235 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CT Context Base Substitution 596260 444.74 31.00 32.36 -1.36 Before
REGRESSION.HCC1395_tumor.L008 CTA Context Base Insertion 58487 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTA Context Base Deletion 58487 3.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTC Context Base Insertion 146101 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTC Context Base Deletion 146101 8.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTG Context Base Insertion 213535 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTG Context Base Deletion 213535 5.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTT Context Base Insertion 146055 4.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTT Context Base Deletion 146055 5.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GA Context Base Substitution 494542 830.89 28.00 29.62 -1.62 Before
REGRESSION.HCC1395_tumor.L008 GAA Context Base Insertion 140859 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAA Context Base Deletion 140859 3.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAC Context Base Insertion 83590 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAC Context Base Deletion 83590 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAG Context Base Insertion 149551 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAG Context Base Deletion 149551 5.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAT Context Base Insertion 83481 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAT Context Base Deletion 83481 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GC Context Base Substitution 487771 1124.73 27.00 30.25 -3.25 Before
REGRESSION.HCC1395_tumor.L008 GCA Context Base Insertion 147704 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCA Context Base Deletion 147704 5.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCC Context Base Insertion 147269 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCC Context Base Deletion 147269 5.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCG Context Base Insertion 36691 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCG Context Base Deletion 36691 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCT Context Base Insertion 155638 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCT Context Base Deletion 155638 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GG Context Base Substitution 576604 732.25 29.00 31.67 -2.67 Before
REGRESSION.HCC1395_tumor.L008 GGA Context Base Insertion 156419 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGA Context Base Deletion 156419 5.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGC Context Base Insertion 145250 2.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGC Context Base Deletion 145250 5.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGG Context Base Insertion 158398 2.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGG Context Base Deletion 158398 11.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGT Context Base Insertion 115029 2.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGT Context Base Deletion 115029 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GT Context Base Substitution 407923 700.34 28.00 32.00 -4.00 Before
REGRESSION.HCC1395_tumor.L008 GTA Context Base Insertion 65885 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTA Context Base Deletion 65885 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTC Context Base Insertion 91269 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTC Context Base Deletion 91269 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTG Context Base Insertion 139970 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTG Context Base Deletion 139970 9.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTT Context Base Insertion 99660 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTT Context Base Deletion 99660 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TA Context Base Substitution 288240 774.31 26.00 29.67 -3.67 Before
REGRESSION.HCC1395_tumor.L008 TAA Context Base Insertion 87817 3.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAA Context Base Deletion 87817 3.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAC Context Base Insertion 59964 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAC Context Base Deletion 59964 3.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAG Context Base Insertion 59815 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAG Context Base Deletion 59815 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAT Context Base Insertion 70647 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAT Context Base Deletion 70647 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TC Context Base Substitution 448901 1045.66 27.00 30.44 -3.44 Before
REGRESSION.HCC1395_tumor.L008 TCA Context Base Insertion 132154 2.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCA Context Base Deletion 132154 6.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCC Context Base Insertion 145295 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCC Context Base Deletion 145295 4.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCG Context Base Insertion 18501 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCG Context Base Deletion 18501 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCT Context Base Insertion 153590 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCT Context Base Deletion 153590 5.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TG Context Base Substitution 586280 434.98 31.00 31.68 -0.68 Before
REGRESSION.HCC1395_tumor.L008 TGA Context Base Insertion 138622 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGA Context Base Deletion 138622 2.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGC Context Base Insertion 136120 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGC Context Base Deletion 136120 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGG Context Base Insertion 174018 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGG Context Base Deletion 174018 3.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGT Context Base Insertion 138478 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGT Context Base Deletion 138478 9.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TT Context Base Substitution 538152 731.19 29.00 32.75 -3.75 Before
REGRESSION.HCC1395_tumor.L008 TTA Context Base Insertion 87076 3.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTA Context Base Deletion 87076 3.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTC Context Base Insertion 129639 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTC Context Base Deletion 129639 6.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTG Context Base Insertion 113746 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTG Context Base Deletion 113746 2.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTT Context Base Insertion 179960 15.14 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L008 TTT Context Base Deletion 179960 56.24 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L008 -1 Cycle Base Substitution 26534 106.48 24.00 25.78 -1.78 Before
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Substitution 26879 41.59 30.00 31.58 -1.58 Before
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Insertion 26879 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Deletion 26879 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Substitution 24833 49.18 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Insertion 24615 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Deletion 24615 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Substitution 24876 55.71 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Insertion 24670 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Deletion 24670 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Substitution 24810 32.10 30.00 30.43 -0.43 Before
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Insertion 24593 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Deletion 24593 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Substitution 24671 55.41 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Insertion 24432 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Deletion 24432 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Substitution 24605 46.08 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Insertion 24340 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Deletion 24340 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Substitution 24638 53.95 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Insertion 24368 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Deletion 24368 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Substitution 24422 42.58 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Insertion 24167 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Deletion 24167 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Substitution 24447 35.48 29.00 30.00 -1.00 Before
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Insertion 24191 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Deletion 24191 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Substitution 24418 53.09 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Insertion 24165 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Deletion 24165 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Substitution 24484 53.73 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Insertion 24220 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Deletion 24220 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Substitution 26894 41.34 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Insertion 26894 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Deletion 26894 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Substitution 24318 43.11 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Insertion 24025 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Deletion 24025 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Substitution 24268 42.01 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Insertion 23966 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Deletion 23966 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Substitution 24250 53.01 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Insertion 23956 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Deletion 23956 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Substitution 24141 64.98 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Insertion 23837 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Deletion 23837 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Substitution 23962 39.98 29.00 29.62 -0.62 Before
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Insertion 23648 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Deletion 23648 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Substitution 23991 46.49 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Insertion 23668 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Deletion 23668 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Substitution 23923 39.61 29.00 29.81 -0.81 Before
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Insertion 23591 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Deletion 23591 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Substitution 23825 45.21 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Insertion 23503 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Deletion 23503 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Substitution 23772 49.01 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Insertion 23460 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Deletion 23460 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Substitution 23738 56.60 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Insertion 23415 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Deletion 23415 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Substitution 26860 31.18 31.00 31.47 -0.47 Before
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Insertion 26860 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Deletion 26860 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Substitution 23684 57.70 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Insertion 23378 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Deletion 23378 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Substitution 23473 42.37 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Insertion 23166 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Deletion 23166 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Substitution 23510 43.27 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Insertion 23202 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Deletion 23202 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Substitution 23447 44.79 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Insertion 23138 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Deletion 23138 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Substitution 23339 45.87 28.00 29.71 -1.71 Before
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Insertion 23042 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Deletion 23042 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Substitution 23370 48.20 28.00 29.58 -1.58 Before
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Insertion 23061 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Deletion 23061 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Substitution 23231 51.75 28.00 29.50 -1.50 Before
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Insertion 22905 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Deletion 22905 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Substitution 23204 59.57 28.00 29.38 -1.38 Before
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Insertion 22900 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Deletion 22900 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Substitution 23012 48.30 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Insertion 22707 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Deletion 22707 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Substitution 22918 45.82 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Insertion 22595 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Deletion 22595 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Substitution 26816 41.77 30.00 31.73 -1.73 Before
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Insertion 26816 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Deletion 26816 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Substitution 22986 49.01 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Insertion 22666 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Deletion 22666 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Substitution 22858 39.34 29.00 29.77 -0.77 Before
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Insertion 22538 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Deletion 22538 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Substitution 22828 48.75 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Insertion 22509 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Deletion 22509 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Substitution 22736 43.05 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Insertion 22422 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Deletion 22422 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Substitution 22655 49.36 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Insertion 22314 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Deletion 22314 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Substitution 22602 41.93 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Insertion 22259 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Deletion 22259 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Substitution 22425 43.71 28.00 29.43 -1.43 Before
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Insertion 22079 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Deletion 22079 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Substitution 22416 47.30 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Insertion 22059 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Deletion 22059 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Substitution 22343 39.36 29.00 29.89 -0.89 Before
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Insertion 22004 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Deletion 22004 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Substitution 22251 49.87 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Insertion 21930 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Deletion 21930 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Substitution 26752 44.88 30.00 31.66 -1.66 Before
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Insertion 26752 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Deletion 26752 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Substitution 22127 37.40 29.00 29.54 -0.54 Before
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Insertion 21746 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Deletion 21746 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Substitution 22130 36.80 29.00 29.70 -0.70 Before
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Insertion 21743 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Deletion 21743 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Substitution 21981 38.73 28.00 29.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Insertion 21540 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Deletion 21540 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Substitution 21899 39.71 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Insertion 21428 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Deletion 21428 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Substitution 21809 35.48 29.00 29.59 -0.59 Before
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Insertion 21314 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Deletion 21314 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Substitution 21735 44.46 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Insertion 16588 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Deletion 16588 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Substitution 21556 73.43 28.00 30.25 -2.25 Before
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Insertion 16518 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Deletion 16518 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -147 Cycle Base Substitution 21450 240.44 23.00 30.01 -7.01 Before
REGRESSION.HCC1395_tumor.L008 -148 Cycle Base Substitution 21357 852.28 15.00 30.26 -15.26 Before
REGRESSION.HCC1395_tumor.L008 -149 Cycle Base Substitution 13232 779.06 14.00 30.53 -16.53 Before
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Substitution 27006 26.76 31.00 31.48 -0.48 Before
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Insertion 27006 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Deletion 27006 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -150 Cycle Base Substitution 4705 5.84 30.00 30.59 -0.59 Before
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Substitution 26935 41.24 30.00 31.68 -1.68 Before
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Insertion 26935 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Deletion 26935 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Substitution 26778 47.46 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Insertion 26778 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Deletion 26778 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Substitution 26817 37.55 30.00 31.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Insertion 26817 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Deletion 26817 1.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Substitution 26807 45.30 30.00 31.38 -1.38 Before
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Insertion 26807 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Deletion 26807 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -2 Cycle Base Substitution 27099 70.23 27.00 28.43 -1.43 Before
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Substitution 26812 33.06 30.00 31.83 -1.83 Before
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Insertion 26812 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Deletion 26812 2.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Substitution 26664 28.63 31.00 31.72 -0.72 Before
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Insertion 26664 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Deletion 26664 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Substitution 26809 43.57 30.00 31.93 -1.93 Before
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Insertion 26809 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Deletion 26809 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Substitution 26794 47.42 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Insertion 26794 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Deletion 26794 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Substitution 26743 34.40 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Insertion 26743 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Deletion 26743 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Substitution 26715 41.50 31.00 32.01 -1.01 Before
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Insertion 26715 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Deletion 26715 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Substitution 26708 45.82 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Insertion 26708 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Deletion 26708 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Substitution 26718 39.13 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Insertion 26718 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Deletion 26718 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Substitution 26571 32.48 30.00 30.08 -0.08 Before
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Insertion 26571 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Deletion 26571 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Substitution 26756 35.58 30.00 30.01 -0.01 Before
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Insertion 26755 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Deletion 26755 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -3 Cycle Base Substitution 27018 65.91 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Substitution 26732 42.74 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Insertion 26731 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Deletion 26731 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Substitution 26676 51.39 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Insertion 26674 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Deletion 26674 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Substitution 26614 30.23 30.00 30.13 -0.13 Before
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Insertion 26612 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Deletion 26612 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Substitution 26665 42.41 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Insertion 26664 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Deletion 26664 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Substitution 26652 31.70 30.00 30.42 -0.42 Before
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Insertion 26649 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Deletion 26649 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Substitution 26635 39.41 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Insertion 26634 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Deletion 26634 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Substitution 26752 43.59 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Insertion 26751 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Deletion 26751 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Substitution 26591 31.44 30.00 30.15 -0.15 Before
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Insertion 26590 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Deletion 26590 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Substitution 26557 38.01 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Insertion 26556 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Deletion 26556 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Substitution 26564 36.98 30.00 30.73 -0.73 Before
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Insertion 26563 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Deletion 26563 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -4 Cycle Base Substitution 26951 76.52 27.00 29.80 -2.80 Before
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Substitution 26524 33.31 30.00 30.77 -0.77 Before
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Insertion 26523 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Deletion 26523 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Substitution 26624 40.68 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Insertion 26623 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Deletion 26623 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Substitution 26514 33.89 30.00 30.62 -0.62 Before
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Insertion 26514 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Deletion 26514 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Substitution 26577 41.53 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Insertion 26577 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Deletion 26577 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Substitution 26631 48.91 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Insertion 26627 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Deletion 26627 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Substitution 26533 35.65 30.00 30.34 -0.34 Before
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Insertion 26525 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Deletion 26525 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Substitution 26537 36.24 30.00 30.39 -0.39 Before
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Insertion 26527 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Deletion 26527 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Substitution 26434 34.23 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Insertion 26424 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Deletion 26424 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Substitution 26532 40.76 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Insertion 26524 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Deletion 26524 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Substitution 26523 43.22 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Insertion 26515 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Deletion 26515 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Substitution 26952 46.48 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Insertion 26952 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Deletion 26952 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Substitution 26554 38.45 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Insertion 26542 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Deletion 26542 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Substitution 26441 32.18 30.00 30.46 -0.46 Before
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Insertion 26425 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Deletion 26425 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Substitution 26535 39.48 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Insertion 26510 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Deletion 26510 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Substitution 26499 48.30 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Insertion 26474 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Deletion 26474 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Substitution 26443 36.61 30.00 30.59 -0.59 Before
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Insertion 26412 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Deletion 26412 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Substitution 26366 52.15 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Insertion 26336 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Deletion 26336 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Substitution 26454 42.83 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Insertion 26421 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Deletion 26421 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Substitution 26280 32.76 30.00 30.68 -0.68 Before
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Insertion 26243 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Deletion 26243 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Substitution 26365 43.84 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Insertion 26322 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Deletion 26322 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Substitution 26430 42.16 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Insertion 26391 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Deletion 26391 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Substitution 26964 58.11 29.00 30.96 -1.96 Before
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Insertion 26964 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Deletion 26964 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Substitution 26438 49.50 29.00 30.88 -1.88 Before
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Insertion 26393 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Deletion 26393 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Substitution 26381 37.62 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Insertion 26330 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Deletion 26330 2.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Substitution 26467 42.16 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Insertion 26413 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Deletion 26413 2.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Substitution 26337 55.99 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Insertion 26266 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Deletion 26266 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Substitution 26254 39.22 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Insertion 26183 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Deletion 26183 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Substitution 26220 41.86 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Insertion 26138 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Deletion 26138 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Substitution 26210 28.63 30.00 30.51 -0.51 Before
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Insertion 26121 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Deletion 26121 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Substitution 26215 32.36 30.00 30.78 -0.78 Before
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Insertion 26126 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Deletion 26126 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Substitution 26276 44.96 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Insertion 26183 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Deletion 26183 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Substitution 26238 38.64 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Insertion 26153 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Deletion 26153 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Substitution 26879 41.31 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Insertion 26879 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Deletion 26879 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Substitution 26234 36.63 30.00 30.64 -0.64 Before
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Insertion 26150 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Deletion 26150 2.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Substitution 25999 35.90 30.00 30.38 -0.38 Before
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Insertion 25904 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Deletion 25904 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Substitution 25987 40.83 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Insertion 25886 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Deletion 25886 2.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Substitution 26154 41.69 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Insertion 26034 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Deletion 26034 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Substitution 26046 31.83 30.00 30.60 -0.60 Before
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Insertion 25928 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Deletion 25928 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Substitution 25927 39.85 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Insertion 25799 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Deletion 25799 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Substitution 25923 34.93 30.00 30.44 -0.44 Before
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Insertion 25777 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Deletion 25777 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Substitution 25842 39.44 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Insertion 25703 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Deletion 25703 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Substitution 25896 44.75 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Insertion 25754 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Deletion 25754 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Substitution 25814 46.23 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Insertion 25658 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Deletion 25658 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Substitution 26920 44.93 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Insertion 26920 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Deletion 26920 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Substitution 25769 43.24 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Insertion 25609 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Deletion 25609 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Substitution 25804 39.91 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Insertion 25635 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Deletion 25635 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Substitution 25714 44.99 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Insertion 25550 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Deletion 25550 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Substitution 25713 49.81 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Insertion 25540 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Deletion 25540 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Substitution 25593 40.86 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Insertion 25417 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Deletion 25417 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Substitution 25548 46.73 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Insertion 25393 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Deletion 25393 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Substitution 25585 39.00 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Insertion 25407 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Deletion 25407 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Substitution 25486 50.82 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Insertion 25319 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Deletion 25319 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Substitution 25506 45.47 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Insertion 25333 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Deletion 25333 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Substitution 25442 49.53 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Insertion 25262 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Deletion 25262 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Substitution 26978 50.49 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Insertion 26978 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Deletion 26978 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Substitution 25461 39.19 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Insertion 25279 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Deletion 25279 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Substitution 25459 46.42 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Insertion 25271 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Deletion 25271 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Substitution 25310 50.17 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Insertion 25110 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Deletion 25110 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Substitution 25236 55.09 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Insertion 25009 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Deletion 25009 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Substitution 25111 34.68 30.00 30.47 -0.47 Before
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Insertion 24883 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Deletion 24883 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Substitution 25218 38.08 29.00 29.98 -0.98 Before
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Insertion 24975 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Deletion 24975 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Substitution 25114 55.88 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Insertion 24871 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Deletion 24871 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Substitution 25091 47.89 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Insertion 24849 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Deletion 24849 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Substitution 24889 49.90 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Insertion 24661 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Deletion 24661 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Substitution 24952 45.54 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Insertion 24735 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Deletion 24735 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 1 Cycle Base Substitution 26600 54.76 28.00 28.47 -0.47 Before
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Substitution 26845 31.80 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Insertion 26845 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Deletion 26845 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Substitution 24723 52.25 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Insertion 24507 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Deletion 24507 1.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Substitution 24737 26.19 30.00 30.49 -0.49 Before
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Insertion 24533 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Deletion 24533 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Substitution 24685 29.19 30.00 30.66 -0.66 Before
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Insertion 24464 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Deletion 24464 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Substitution 24607 41.21 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Insertion 24359 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Deletion 24359 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Substitution 24586 33.79 30.00 30.37 -0.37 Before
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Insertion 24337 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Deletion 24337 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Substitution 24523 38.33 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Insertion 24260 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Deletion 24260 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Substitution 24537 40.93 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Insertion 24290 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Deletion 24290 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Substitution 24365 41.41 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Insertion 24120 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Deletion 24120 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Substitution 24270 51.51 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Insertion 24029 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Deletion 24029 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Substitution 24287 31.13 30.00 30.81 -0.81 Before
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Insertion 24032 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Deletion 24032 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Substitution 26874 32.81 30.00 30.87 -0.87 Before
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Insertion 26874 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Deletion 26874 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Substitution 24302 47.60 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Insertion 24019 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Deletion 24019 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Substitution 24308 40.94 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Insertion 24001 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Deletion 24001 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Substitution 24143 48.26 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Insertion 23831 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Deletion 23831 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Substitution 24236 43.68 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Insertion 23923 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Deletion 23923 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Substitution 24052 32.97 30.00 30.30 -0.30 Before
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Insertion 23740 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Deletion 23740 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Substitution 23924 41.11 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Insertion 23598 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Deletion 23598 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Substitution 23875 40.08 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Insertion 23540 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Deletion 23540 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Substitution 23740 47.32 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Insertion 23409 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Deletion 23409 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Substitution 23602 35.72 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Insertion 23306 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Deletion 23306 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Substitution 23721 48.50 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Insertion 23419 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Deletion 23419 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Substitution 26865 35.82 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Insertion 26865 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Deletion 26865 1.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Substitution 23594 42.26 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Insertion 23305 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Deletion 23305 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Substitution 23648 55.48 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Insertion 23331 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Deletion 23331 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Substitution 23334 44.90 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Insertion 23017 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Deletion 23017 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Substitution 23322 49.78 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Insertion 23014 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Deletion 23014 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Substitution 23310 55.41 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Insertion 23008 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Deletion 23008 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Substitution 23309 37.20 29.00 29.93 -0.93 Before
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Insertion 23007 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Deletion 23007 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Substitution 23246 49.57 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Insertion 22951 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Deletion 22951 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Substitution 23125 37.81 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Insertion 22839 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Deletion 22839 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Substitution 23016 49.44 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Insertion 22722 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Deletion 22722 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Substitution 22988 38.86 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Insertion 22688 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Deletion 22688 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Substitution 26777 36.53 30.00 30.98 -0.98 Before
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Insertion 26777 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Deletion 26777 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Substitution 22910 40.36 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Insertion 22599 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Deletion 22599 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Substitution 22945 52.00 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Insertion 22638 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Deletion 22638 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Substitution 22847 50.66 28.00 29.67 -1.67 Before
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Insertion 22525 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Deletion 22525 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Substitution 22643 54.43 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Insertion 22340 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Deletion 22340 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Substitution 22540 41.92 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Insertion 22220 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Deletion 22220 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Substitution 22487 45.74 28.00 29.61 -1.61 Before
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Insertion 22138 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Deletion 22138 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Substitution 22398 46.96 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Insertion 22075 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Deletion 22075 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Substitution 22403 43.49 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Insertion 22074 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Deletion 22074 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Substitution 22294 40.87 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Insertion 21986 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Deletion 21986 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Substitution 22251 47.75 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Insertion 21937 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Deletion 21937 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Substitution 26727 22.60 31.00 31.25 -0.25 Before
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Insertion 26727 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Deletion 26727 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Substitution 22135 37.58 29.00 29.66 -0.66 Before
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Insertion 21807 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Deletion 21807 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Substitution 22172 40.15 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Insertion 21835 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Deletion 21835 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Substitution 22101 47.77 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Insertion 21750 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Deletion 21750 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Substitution 21976 46.52 28.00 29.32 -1.32 Before
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Insertion 21625 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Deletion 21625 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Substitution 21883 45.68 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Insertion 21515 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Deletion 21515 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Substitution 21843 41.81 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Insertion 21456 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Deletion 21456 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Substitution 21837 38.33 29.00 29.95 -0.95 Before
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Insertion 21468 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Deletion 21468 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 147 Cycle Base Substitution 21602 53.33 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L008 148 Cycle Base Substitution 21477 53.30 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L008 149 Cycle Base Substitution 21424 47.65 28.00 29.59 -1.59 Before
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Substitution 26782 34.28 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Insertion 26782 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Deletion 26782 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 150 Cycle Base Substitution 21366 42.19 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Substitution 26704 24.67 32.00 33.01 -1.01 Before
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Insertion 26704 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Deletion 26704 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Substitution 26689 27.32 31.00 32.73 -1.73 Before
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Insertion 26689 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Deletion 26689 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Substitution 26741 18.35 32.00 32.52 -0.52 Before
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Insertion 26741 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Deletion 26741 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Substitution 26747 23.04 32.00 32.92 -0.92 Before
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Insertion 26747 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Deletion 26747 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 2 Cycle Base Substitution 26963 45.12 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Substitution 26692 24.57 32.00 32.85 -0.85 Before
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Insertion 26692 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Deletion 26692 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Substitution 26616 25.59 32.00 32.67 -0.67 Before
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Insertion 26616 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Deletion 26616 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Substitution 26806 16.61 33.00 33.00 -0.00 Before
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Insertion 26806 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Deletion 26806 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Substitution 26621 21.25 32.00 32.73 -0.73 Before
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Insertion 26621 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Deletion 26621 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Substitution 26664 22.20 33.00 33.24 -0.24 Before
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Insertion 26664 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Deletion 26664 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Substitution 26671 24.66 32.00 32.57 -0.57 Before
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Insertion 26671 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Deletion 26671 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Substitution 26579 34.05 30.00 31.51 -1.51 Before
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Insertion 26579 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Deletion 26579 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Substitution 26682 30.75 31.00 31.17 -0.17 Before
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Insertion 26682 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Deletion 26682 1.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Substitution 26709 25.16 31.00 31.38 -0.38 Before
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Insertion 26709 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Deletion 26709 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Substitution 26655 26.20 31.00 31.37 -0.37 Before
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Insertion 26654 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Deletion 26654 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 3 Cycle Base Substitution 26979 53.76 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Substitution 26659 32.18 30.00 31.56 -1.56 Before
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Insertion 26658 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Deletion 26658 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Substitution 26526 27.82 31.00 31.65 -0.65 Before
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Insertion 26524 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Deletion 26524 2.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Substitution 26616 35.41 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Insertion 26613 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Deletion 26613 2.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Substitution 26608 28.09 31.00 31.12 -0.12 Before
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Insertion 26607 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Deletion 26607 2.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Substitution 26565 32.32 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Insertion 26562 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Deletion 26562 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Substitution 26619 27.81 31.00 31.52 -0.52 Before
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Insertion 26617 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Deletion 26617 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Substitution 26537 33.66 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Insertion 26537 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Deletion 26537 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Substitution 26522 31.38 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Insertion 26522 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Deletion 26522 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Substitution 26528 32.01 30.00 31.66 -1.66 Before
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Insertion 26526 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Deletion 26526 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Substitution 26543 38.39 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Insertion 26542 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Deletion 26542 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 4 Cycle Base Substitution 27038 61.90 29.00 31.13 -2.13 Before
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Substitution 26555 32.24 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Insertion 26554 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Deletion 26554 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Substitution 26571 30.75 31.00 31.54 -0.54 Before
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Insertion 26569 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Deletion 26569 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Substitution 26519 37.54 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Insertion 26519 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Deletion 26519 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Substitution 26546 22.35 31.00 31.59 -0.59 Before
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Insertion 26546 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Deletion 26546 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Substitution 26532 34.15 30.00 31.12 -1.12 Before
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Insertion 26529 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Deletion 26529 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Substitution 26445 33.38 30.00 31.69 -1.69 Before
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Insertion 26439 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Deletion 26439 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Substitution 26416 23.24 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Insertion 26406 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Deletion 26406 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Substitution 26416 31.04 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Insertion 26405 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Deletion 26405 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Substitution 26471 33.64 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Insertion 26465 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Deletion 26465 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Substitution 26466 39.67 29.00 30.97 -1.97 Before
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Insertion 26457 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Deletion 26457 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Substitution 26968 38.74 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Insertion 26968 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Deletion 26968 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Substitution 26440 29.13 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Insertion 26427 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Deletion 26427 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Substitution 26341 35.90 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Insertion 26322 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Deletion 26322 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Substitution 26393 30.39 31.00 31.72 -0.72 Before
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Insertion 26370 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Deletion 26370 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Substitution 26381 27.76 31.00 31.46 -0.46 Before
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Insertion 26361 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Deletion 26361 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Substitution 26334 38.26 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Insertion 26312 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Deletion 26312 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Substitution 26302 24.21 31.00 31.64 -0.64 Before
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Insertion 26272 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Deletion 26272 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Substitution 26472 26.84 31.00 31.49 -0.49 Before
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Insertion 26436 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Deletion 26436 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Substitution 26305 31.03 31.00 31.06 -0.06 Before
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Insertion 26270 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Deletion 26270 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Substitution 26367 31.07 31.00 31.40 -0.40 Before
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Insertion 26325 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Deletion 26325 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Substitution 26393 31.41 31.00 31.48 -0.48 Before
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Insertion 26357 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Deletion 26357 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Substitution 26905 35.16 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Insertion 26905 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Deletion 26905 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Substitution 26238 33.85 30.00 31.05 -1.05 Before
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Insertion 26198 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Deletion 26198 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Substitution 26288 34.15 30.00 31.38 -1.38 Before
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Insertion 26237 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Deletion 26237 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Substitution 26192 35.15 30.00 30.94 -0.94 Before
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Insertion 26137 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Deletion 26137 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Substitution 26175 38.69 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Insertion 26108 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Deletion 26108 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Substitution 26122 45.04 29.00 30.99 -1.99 Before
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Insertion 26044 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Deletion 26044 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Substitution 26172 33.68 30.00 31.33 -1.33 Before
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Insertion 26096 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Deletion 26096 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Substitution 26050 30.93 30.00 31.21 -1.21 Before
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Insertion 25964 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Deletion 25964 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Substitution 26079 36.40 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Insertion 25996 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Deletion 25996 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Substitution 26078 43.48 29.00 30.82 -1.82 Before
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Insertion 25992 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Deletion 25992 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Substitution 26132 31.83 30.00 31.18 -1.18 Before
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Insertion 26049 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Deletion 26049 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Substitution 26817 25.94 31.00 31.20 -0.20 Before
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Insertion 26817 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Deletion 26817 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Substitution 26051 29.66 31.00 31.25 -0.25 Before
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Insertion 25965 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Deletion 25965 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Substitution 26120 27.82 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Insertion 26016 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Deletion 26016 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Substitution 26045 34.67 30.00 31.27 -1.27 Before
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Insertion 25941 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Deletion 25941 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Substitution 26071 45.12 30.00 31.04 -1.04 Before
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Insertion 25960 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Deletion 25960 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Substitution 25877 42.11 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Insertion 25762 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Deletion 25762 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Substitution 25940 41.89 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Insertion 25820 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Deletion 25820 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Substitution 25881 38.95 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Insertion 25743 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Deletion 25743 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Substitution 25885 46.11 29.00 30.98 -1.98 Before
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Insertion 25751 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Deletion 25751 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Substitution 25830 34.64 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Insertion 25691 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Deletion 25691 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Substitution 25754 41.02 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Insertion 25600 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Deletion 25600 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Substitution 26785 34.17 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Insertion 26785 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Deletion 26785 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Substitution 25683 40.51 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Insertion 25531 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Deletion 25531 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Substitution 25669 35.09 30.00 30.54 -0.54 Before
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Insertion 25481 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Deletion 25481 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Substitution 25657 44.97 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Insertion 25486 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Deletion 25486 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Substitution 25559 32.59 30.00 30.98 -0.98 Before
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Insertion 25399 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Deletion 25399 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Substitution 25494 40.99 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Insertion 25328 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Deletion 25328 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Substitution 25537 39.10 29.00 30.75 -1.75 Before
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Insertion 25379 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Deletion 25379 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Substitution 25423 42.29 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Insertion 25238 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Deletion 25238 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Substitution 25417 25.72 30.00 30.77 -0.77 Before
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Insertion 25242 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Deletion 25242 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Substitution 25291 45.66 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Insertion 25111 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Deletion 25111 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Substitution 25262 34.74 30.00 30.71 -0.71 Before
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Insertion 25089 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Deletion 25089 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Substitution 26840 33.47 30.00 31.24 -1.24 Before
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Insertion 26840 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Deletion 26840 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Substitution 25305 32.26 30.00 30.96 -0.96 Before
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Insertion 25118 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Deletion 25118 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Substitution 25385 43.72 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Insertion 25199 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Deletion 25199 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Substitution 25199 47.75 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Insertion 25012 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Deletion 25012 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Substitution 25193 35.49 30.00 30.78 -0.78 Before
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Insertion 24982 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Deletion 24982 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Substitution 25067 33.19 30.00 30.46 -0.46 Before
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Insertion 24845 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Deletion 24845 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Substitution 25144 27.48 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Insertion 24903 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Deletion 24903 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Substitution 25069 40.38 29.00 30.74 -1.74 Before
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Insertion 24832 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Deletion 24832 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Substitution 24930 39.84 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Insertion 24687 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Deletion 24687 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Substitution 24950 42.39 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Insertion 24721 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Deletion 24721 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Substitution 24713 35.96 29.00 30.82 -1.82 Before
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Insertion 24497 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Deletion 24497 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 12 QualityScore Base Substitution 81206 7793.84 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L008 24 QualityScore Base Substitution 195517 783.61 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 40 QualityScore Base Substitution 7269465 5346.35 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L008 45 QualityScore Base Insertion 7546188 138.61 47.00 45.00 2.00 Before
REGRESSION.HCC1395_tumor.L008 45 QualityScore Base Deletion 7546188 374.21 43.00 45.00 -2.00 Before
REGRESSION.HCC1395_tumor.L001 AA Context Base Substitution 838217 1860.20 27.00 25.56 1.44 After
REGRESSION.HCC1395_tumor.L001 AAA Context Base Insertion 297407 79.46 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L001 AAA Context Base Deletion 297407 194.04 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L001 AAC Context Base Insertion 132989 5.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AAC Context Base Deletion 132989 9.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AAG Context Base Insertion 199491 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AAG Context Base Deletion 199491 10.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AAT Context Base Insertion 174217 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AAT Context Base Deletion 174217 13.99 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 AC Context Base Substitution 533796 1895.94 25.00 24.74 0.26 After
REGRESSION.HCC1395_tumor.L001 ACA Context Base Insertion 206308 21.28 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 ACA Context Base Deletion 206308 32.55 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 ACC Context Base Insertion 146935 7.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ACC Context Base Deletion 146935 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ACG Context Base Insertion 30708 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ACG Context Base Deletion 30708 2.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ACT Context Base Insertion 158447 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ACT Context Base Deletion 158447 10.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AG Context Base Substitution 803328 615.20 31.00 28.73 2.27 After
REGRESSION.HCC1395_tumor.L001 AGA Context Base Insertion 222590 6.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGA Context Base Deletion 222590 10.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGC Context Base Insertion 193550 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGC Context Base Deletion 193550 5.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGG Context Base Insertion 228096 9.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGG Context Base Deletion 228096 6.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGT Context Base Insertion 155664 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGT Context Base Deletion 155664 7.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AT Context Base Substitution 604222 618.22 30.00 27.65 2.35 After
REGRESSION.HCC1395_tumor.L001 ATA Context Base Insertion 135001 9.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATA Context Base Deletion 135001 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATC Context Base Insertion 121192 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATC Context Base Deletion 121192 6.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATG Context Base Insertion 175629 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATG Context Base Deletion 175629 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATT Context Base Insertion 183290 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATT Context Base Deletion 183290 8.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CA Context Base Substitution 861161 1755.72 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L001 CAA Context Base Insertion 172470 7.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CAA Context Base Deletion 172470 11.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CAC Context Base Insertion 184712 21.63 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 CAC Context Base Deletion 184712 31.28 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 CAG Context Base Insertion 293376 8.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CAG Context Base Deletion 293376 10.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CAT Context Base Insertion 171267 7.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CAT Context Base Deletion 171267 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CC Context Base Substitution 766432 2435.14 25.00 24.65 0.35 After
REGRESSION.HCC1395_tumor.L001 CCA Context Base Insertion 246410 6.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCA Context Base Deletion 246410 6.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCC Context Base Insertion 212774 11.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCC Context Base Deletion 212774 15.63 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 CCG Context Base Insertion 53455 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCG Context Base Deletion 53455 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCT Context Base Insertion 243729 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCT Context Base Deletion 243729 9.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CG Context Base Substitution 160000 558.98 25.00 24.97 0.03 After
REGRESSION.HCC1395_tumor.L001 CGA Context Base Insertion 56330 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGA Context Base Deletion 56330 0.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGC Context Base Insertion 80598 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGC Context Base Deletion 80598 5.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGG Context Base Insertion 97282 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGG Context Base Deletion 97282 9.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGT Context Base Insertion 63503 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGT Context Base Deletion 63503 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CT Context Base Substitution 842674 410.63 33.00 29.39 3.61 After
REGRESSION.HCC1395_tumor.L001 CTA Context Base Insertion 96879 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTA Context Base Deletion 96879 6.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTC Context Base Insertion 201933 7.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTC Context Base Deletion 201933 20.79 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 CTG Context Base Insertion 294390 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTG Context Base Deletion 294390 10.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTT Context Base Insertion 211352 5.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTT Context Base Deletion 211352 8.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GA Context Base Substitution 704832 1006.19 28.00 26.98 1.02 After
REGRESSION.HCC1395_tumor.L001 GAA Context Base Insertion 210985 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAA Context Base Deletion 210985 8.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAC Context Base Insertion 118606 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAC Context Base Deletion 118606 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAG Context Base Insertion 207073 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAG Context Base Deletion 207073 10.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAT Context Base Insertion 125233 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAT Context Base Deletion 125233 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GC Context Base Substitution 665050 1440.18 27.00 26.08 0.92 After
REGRESSION.HCC1395_tumor.L001 GCA Context Base Insertion 205669 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCA Context Base Deletion 205669 4.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCC Context Base Insertion 199638 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCC Context Base Deletion 199638 8.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCG Context Base Insertion 48642 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCG Context Base Deletion 48642 6.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCT Context Base Insertion 210833 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCT Context Base Deletion 210833 5.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GG Context Base Substitution 791836 736.10 30.00 27.75 2.25 After
REGRESSION.HCC1395_tumor.L001 GGA Context Base Insertion 215123 14.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGA Context Base Deletion 215123 14.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGC Context Base Insertion 196555 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGC Context Base Deletion 196555 8.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGG Context Base Insertion 218617 7.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGG Context Base Deletion 218617 30.94 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 GGT Context Base Insertion 159064 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGT Context Base Deletion 159064 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GT Context Base Substitution 595094 1024.37 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L001 GTA Context Base Insertion 102396 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTA Context Base Deletion 102396 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTC Context Base Insertion 128006 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTC Context Base Deletion 128006 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTG Context Base Insertion 201379 14.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTG Context Base Deletion 201379 37.57 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L001 GTT Context Base Insertion 149938 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTT Context Base Deletion 149938 12.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TA Context Base Substitution 485975 1148.45 26.00 25.09 0.91 After
REGRESSION.HCC1395_tumor.L001 TAA Context Base Insertion 150097 10.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAA Context Base Deletion 150097 13.89 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 TAC Context Base Insertion 94065 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAC Context Base Deletion 94065 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAG Context Base Insertion 97005 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAG Context Base Deletion 97005 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAT Context Base Insertion 129179 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAT Context Base Deletion 129179 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TC Context Base Substitution 650031 1667.30 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L001 TCA Context Base Insertion 196038 5.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCA Context Base Deletion 196038 12.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCC Context Base Insertion 202198 30.51 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 TCC Context Base Deletion 202198 8.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCG Context Base Insertion 26018 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCG Context Base Deletion 26018 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCT Context Base Insertion 224000 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCT Context Base Deletion 224000 13.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TG Context Base Substitution 849286 384.99 33.00 29.43 3.57 After
REGRESSION.HCC1395_tumor.L001 TGA Context Base Insertion 205333 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGA Context Base Deletion 205333 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGC Context Base Insertion 190109 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGC Context Base Deletion 190109 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGG Context Base Insertion 242007 4.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGG Context Base Deletion 242007 12.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGT Context Base Insertion 213095 14.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGT Context Base Deletion 213095 38.43 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L001 TT Context Base Substitution 845408 944.33 29.00 28.24 0.76 After
REGRESSION.HCC1395_tumor.L001 TTA Context Base Insertion 148029 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTA Context Base Deletion 148029 10.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTC Context Base Insertion 195049 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTC Context Base Deletion 195049 10.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTG Context Base Insertion 171805 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTG Context Base Deletion 171805 8.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTT Context Base Insertion 295213 58.34 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L001 TTT Context Base Deletion 295213 160.68 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L001 -1 Cycle Base Substitution 38749 163.62 24.00 23.57 0.43 After
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Substitution 39073 57.68 28.00 27.99 0.01 After
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Insertion 39073 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Deletion 39073 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Substitution 36684 81.26 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Insertion 36393 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Deletion 36393 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Substitution 36589 93.30 26.00 26.63 -0.63 After
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Insertion 36285 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Deletion 36285 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Substitution 36560 93.25 26.00 26.62 -0.62 After
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Insertion 36236 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Deletion 36236 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Substitution 36325 89.91 26.00 26.49 -0.49 After
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Insertion 36000 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Deletion 36000 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Substitution 36258 76.54 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Insertion 35923 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Deletion 35923 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Substitution 36169 76.84 27.00 26.20 0.80 After
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Insertion 35825 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Deletion 35825 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Substitution 36201 81.91 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Insertion 35874 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Deletion 35874 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Substitution 36008 66.78 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Insertion 35688 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Deletion 35688 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Substitution 36021 84.33 26.00 26.59 -0.59 After
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Insertion 35690 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Deletion 35690 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Substitution 35897 86.16 26.00 26.59 -0.59 After
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Insertion 35578 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Deletion 35578 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Substitution 39057 62.51 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Insertion 39057 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Deletion 39057 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Substitution 35886 79.86 26.00 26.38 -0.38 After
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Insertion 35542 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Deletion 35542 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Substitution 35706 81.13 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Insertion 35338 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Deletion 35338 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Substitution 35678 65.29 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Insertion 35299 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Deletion 35299 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Substitution 35586 77.34 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Insertion 35228 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Deletion 35228 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Substitution 35470 87.55 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Insertion 35124 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Deletion 35124 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Substitution 35426 88.34 26.00 26.40 -0.40 After
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Insertion 35075 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Deletion 35075 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Substitution 35250 80.93 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Insertion 34895 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Deletion 34895 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Substitution 35154 83.70 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Insertion 34780 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Deletion 34780 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Substitution 35159 69.50 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Insertion 34753 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Deletion 34753 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Substitution 35050 74.36 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Insertion 34658 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Deletion 34658 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Substitution 39049 37.37 29.00 27.89 1.11 After
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Insertion 39049 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Deletion 39049 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Substitution 34908 93.58 26.00 26.38 -0.38 After
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Insertion 34553 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Deletion 34553 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Substitution 34881 84.66 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Insertion 34512 0.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Deletion 34512 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Substitution 34655 76.91 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Insertion 34300 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Deletion 34300 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Substitution 34664 90.86 26.00 25.62 0.38 After
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Insertion 34285 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Deletion 34285 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Substitution 34544 79.48 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Insertion 34133 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Deletion 34133 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Substitution 34482 80.73 26.00 26.25 -0.25 After
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Insertion 34092 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Deletion 34092 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Substitution 34427 79.30 26.00 26.33 -0.33 After
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Insertion 34030 2.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Deletion 34030 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Substitution 34395 87.25 26.00 25.78 0.22 After
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Insertion 34008 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Deletion 34008 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Substitution 34178 78.02 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Insertion 33784 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Deletion 33784 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Substitution 34070 93.89 26.00 25.66 0.34 After
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Insertion 33691 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Deletion 33691 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Substitution 39050 50.68 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Insertion 39050 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Deletion 39050 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Substitution 34014 69.69 27.00 26.27 0.73 After
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Insertion 33615 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Deletion 33615 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Substitution 33869 90.15 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Insertion 33468 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Deletion 33468 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Substitution 33820 79.94 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Insertion 33405 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Deletion 33405 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Substitution 33690 73.00 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Insertion 33274 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Deletion 33274 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Substitution 33564 66.53 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Insertion 33151 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Deletion 33151 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Substitution 33507 77.35 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Insertion 33079 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Deletion 33079 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Substitution 33293 80.27 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Insertion 32845 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Deletion 32845 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Substitution 33158 72.09 27.00 26.06 0.94 After
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Insertion 32703 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Deletion 32703 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Substitution 33106 69.06 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Insertion 32604 0.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Deletion 32604 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Substitution 33050 72.71 27.00 26.07 0.93 After
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Insertion 32550 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Deletion 32550 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Substitution 39063 61.84 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Insertion 39063 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Deletion 39063 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Substitution 32984 71.67 27.00 26.13 0.87 After
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Insertion 32444 0.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Deletion 32444 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Substitution 32837 57.28 27.00 26.19 0.81 After
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Insertion 32276 0.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Deletion 32276 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Substitution 32742 58.33 27.00 26.24 0.76 After
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Insertion 32130 0.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Deletion 32130 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Substitution 32480 55.96 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Insertion 31840 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Deletion 31840 0.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Substitution 32381 52.91 27.00 26.26 0.74 After
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Insertion 31692 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Deletion 31692 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Substitution 32248 42.56 28.00 26.52 1.48 After
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Insertion 24918 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Deletion 24918 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Substitution 32051 22.35 28.00 26.20 1.80 After
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Insertion 24801 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Deletion 24801 0.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -147 Cycle Base Substitution 31914 16.12 27.00 23.13 3.87 After
REGRESSION.HCC1395_tumor.L001 -148 Cycle Base Substitution 31627 17.87 24.00 16.09 7.91 After
REGRESSION.HCC1395_tumor.L001 -149 Cycle Base Substitution 19779 22.99 22.00 14.17 7.83 After
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Substitution 38947 46.73 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Insertion 38947 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Deletion 38947 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -150 Cycle Base Substitution 6937 14.34 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Substitution 38990 63.07 28.00 27.76 0.24 After
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Insertion 38990 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Deletion 38990 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Substitution 39020 60.51 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Insertion 39019 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Deletion 39019 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Substitution 39095 48.95 28.00 27.88 0.12 After
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Insertion 39094 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Deletion 39094 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Substitution 38847 61.80 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Insertion 38846 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Deletion 38846 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -2 Cycle Base Substitution 39163 129.18 25.00 25.67 -0.67 After
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Substitution 39000 46.17 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Insertion 38999 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Deletion 38999 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Substitution 38882 56.43 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Insertion 38882 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Deletion 38882 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Substitution 38922 56.46 28.00 27.85 0.15 After
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Insertion 38921 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Deletion 38921 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Substitution 38935 51.67 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Insertion 38934 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Deletion 38934 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Substitution 38931 51.98 28.00 27.82 0.18 After
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Insertion 38930 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Deletion 38930 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Substitution 38900 58.68 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Insertion 38899 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Deletion 38899 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Substitution 38753 50.85 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Insertion 38753 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Deletion 38753 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Substitution 38894 42.28 29.00 27.20 1.80 After
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Insertion 38893 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Deletion 38893 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Substitution 38939 69.23 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Insertion 38935 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Deletion 38935 4.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Substitution 38858 39.48 29.00 27.32 1.68 After
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Insertion 38853 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Deletion 38853 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -3 Cycle Base Substitution 39269 127.62 25.00 26.65 -1.65 After
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Substitution 38846 66.87 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Insertion 38838 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Deletion 38838 4.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Substitution 38863 57.81 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Insertion 38856 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Deletion 38856 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Substitution 38779 54.90 28.00 26.83 1.17 After
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Insertion 38773 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Deletion 38773 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Substitution 38789 40.30 29.00 27.37 1.63 After
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Insertion 38785 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Deletion 38785 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Substitution 38752 49.38 28.00 26.90 1.10 After
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Insertion 38745 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Deletion 38745 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Substitution 38691 44.67 28.00 27.00 1.00 After
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Insertion 38683 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Deletion 38683 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Substitution 38804 55.24 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Insertion 38800 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Deletion 38800 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Substitution 38769 50.91 28.00 27.06 0.94 After
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Insertion 38765 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Deletion 38765 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Substitution 38657 71.82 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Insertion 38650 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Deletion 38650 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Substitution 38641 47.76 28.00 27.00 1.00 After
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Insertion 38636 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Deletion 38636 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -4 Cycle Base Substitution 39123 69.65 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Substitution 38641 54.86 28.00 27.11 0.89 After
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Insertion 38636 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Deletion 38636 4.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Substitution 38627 47.15 28.00 27.21 0.79 After
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Insertion 38620 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Deletion 38620 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Substitution 38698 59.35 28.00 27.28 0.72 After
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Insertion 38692 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Deletion 38692 5.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Substitution 38700 54.27 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Insertion 38692 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Deletion 38692 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Substitution 38724 60.97 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Insertion 38714 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Deletion 38714 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Substitution 38666 61.82 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Insertion 38653 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Deletion 38653 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Substitution 38672 50.84 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Insertion 38661 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Deletion 38661 4.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Substitution 38602 67.11 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Insertion 38594 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Deletion 38594 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Substitution 38563 56.69 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Insertion 38550 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Deletion 38550 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Substitution 38591 58.32 28.00 26.79 1.21 After
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Insertion 38574 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Deletion 38574 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Substitution 39141 45.62 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Insertion 39141 0.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Deletion 39141 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Substitution 38659 56.66 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Insertion 38635 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Deletion 38635 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Substitution 38697 68.71 27.00 27.14 -0.14 After
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Insertion 38672 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Deletion 38672 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Substitution 38572 68.13 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Insertion 38548 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Deletion 38548 5.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Substitution 38585 60.98 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Insertion 38564 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Deletion 38564 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Substitution 38558 67.38 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Insertion 38532 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Deletion 38532 4.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Substitution 38687 75.54 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Insertion 38657 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Deletion 38657 4.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Substitution 38411 69.64 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Insertion 38371 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Deletion 38371 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Substitution 38559 59.34 28.00 27.05 0.95 After
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Insertion 38501 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Deletion 38501 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Substitution 38605 53.38 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Insertion 38550 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Deletion 38550 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Substitution 38487 61.52 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Insertion 38415 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Deletion 38415 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Substitution 38921 61.79 28.00 27.31 0.69 After
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Insertion 38921 0.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Deletion 38921 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Substitution 38471 76.34 27.00 27.03 -0.03 After
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Insertion 38403 2.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Deletion 38403 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Substitution 38320 72.13 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Insertion 38248 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Deletion 38248 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Substitution 38514 59.13 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Insertion 38435 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Deletion 38435 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Substitution 38318 52.04 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Insertion 38247 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Deletion 38247 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Substitution 38254 51.47 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Insertion 38174 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Deletion 38174 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Substitution 38258 74.69 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Insertion 38171 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Deletion 38171 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Substitution 38294 65.62 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Insertion 38194 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Deletion 38194 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Substitution 38242 51.85 28.00 26.89 1.11 After
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Insertion 38138 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Deletion 38138 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Substitution 38200 62.20 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Insertion 38091 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Deletion 38091 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Substitution 38232 68.04 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Insertion 38118 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Deletion 38118 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Substitution 39053 74.40 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Insertion 39053 0.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Deletion 39053 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Substitution 38125 55.96 28.00 27.23 0.77 After
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Insertion 38017 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Deletion 38017 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Substitution 38110 59.96 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Insertion 37986 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Deletion 37986 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Substitution 38094 63.60 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Insertion 37967 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Deletion 37967 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Substitution 38042 70.31 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Insertion 37909 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Deletion 37909 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Substitution 38018 72.49 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Insertion 37874 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Deletion 37874 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Substitution 38038 76.83 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Insertion 37889 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Deletion 37889 4.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Substitution 37872 80.84 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Insertion 37723 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Deletion 37723 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Substitution 37921 67.44 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Insertion 37771 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Deletion 37771 4.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Substitution 37788 64.47 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Insertion 37620 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Deletion 37620 5.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Substitution 37857 66.53 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Insertion 37667 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Deletion 37667 5.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Substitution 39034 74.60 27.00 27.16 -0.16 After
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Insertion 39034 0.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Deletion 39034 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Substitution 37729 76.71 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Insertion 37555 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Deletion 37555 5.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Substitution 37719 69.37 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Insertion 37525 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Deletion 37525 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Substitution 37722 77.85 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Insertion 37524 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Deletion 37524 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Substitution 37491 74.18 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Insertion 37296 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Deletion 37296 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Substitution 37595 83.17 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Insertion 37404 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Deletion 37404 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Substitution 37500 61.69 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Insertion 37279 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Deletion 37279 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Substitution 37450 78.66 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Insertion 37246 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Deletion 37246 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Substitution 37374 83.12 26.00 26.60 -0.60 After
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Insertion 37139 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Deletion 37139 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Substitution 37300 73.80 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Insertion 37084 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Deletion 37084 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Substitution 37375 80.72 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Insertion 37155 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Deletion 37155 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Substitution 39231 53.17 28.00 27.28 0.72 After
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Insertion 39231 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Deletion 39231 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Substitution 37289 80.55 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Insertion 37046 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Deletion 37046 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Substitution 37187 71.08 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Insertion 36953 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Deletion 36953 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Substitution 37155 63.59 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Insertion 36887 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Deletion 36887 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Substitution 37001 81.23 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Insertion 36733 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Deletion 36733 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Substitution 37170 73.24 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Insertion 36894 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Deletion 36894 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Substitution 36944 80.69 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Insertion 36637 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Deletion 36637 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Substitution 36974 81.91 26.00 26.60 -0.60 After
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Insertion 36660 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Deletion 36660 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Substitution 36841 72.89 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Insertion 36554 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Deletion 36554 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Substitution 36740 84.85 26.00 26.07 -0.07 After
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Insertion 36461 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Deletion 36461 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Substitution 36696 86.82 26.00 26.69 -0.69 After
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Insertion 36417 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Deletion 36417 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 1 Cycle Base Substitution 38790 83.46 26.00 26.00 0.00 After
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Substitution 39104 48.54 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Insertion 39104 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Deletion 39104 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Substitution 36770 68.68 27.00 27.09 -0.09 After
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Insertion 36470 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Deletion 36470 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Substitution 36623 44.17 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Insertion 36296 0.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Deletion 36296 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Substitution 36451 81.19 26.00 26.88 -0.88 After
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Insertion 36127 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Deletion 36127 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Substitution 36353 50.93 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Insertion 36019 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Deletion 36019 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Substitution 36375 61.29 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Insertion 36056 0.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Deletion 36056 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Substitution 36217 59.02 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Insertion 35882 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Deletion 35882 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Substitution 36074 69.80 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Insertion 35745 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Deletion 35745 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Substitution 36189 66.17 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Insertion 35874 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Deletion 35874 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Substitution 36025 86.90 26.00 26.68 -0.68 After
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Insertion 35689 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Deletion 35689 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Substitution 35874 68.08 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Insertion 35545 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Deletion 35545 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Substitution 39034 43.11 29.00 27.51 1.49 After
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Insertion 39034 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Deletion 39034 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Substitution 35797 57.90 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Insertion 35445 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Deletion 35445 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Substitution 35722 69.04 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Insertion 35362 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Deletion 35362 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Substitution 35744 75.74 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Insertion 35392 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Deletion 35392 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Substitution 35710 78.66 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Insertion 35345 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Deletion 35345 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Substitution 35396 70.96 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Insertion 35067 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Deletion 35067 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Substitution 35492 72.20 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Insertion 35149 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Deletion 35149 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Substitution 35308 59.98 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Insertion 34945 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Deletion 34945 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Substitution 35188 78.72 26.00 26.77 -0.77 After
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Insertion 34823 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Deletion 34823 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Substitution 35134 68.81 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Insertion 34758 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Deletion 34758 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Substitution 35064 70.43 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Insertion 34690 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Deletion 34690 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Substitution 39124 39.21 29.00 27.60 1.40 After
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Insertion 39124 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Deletion 39124 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Substitution 35031 82.47 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Insertion 34670 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Deletion 34670 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Substitution 34886 67.90 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Insertion 34546 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Deletion 34546 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Substitution 34799 66.65 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Insertion 34447 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Deletion 34447 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Substitution 34805 65.46 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Insertion 34421 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Deletion 34421 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Substitution 34695 58.56 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Insertion 34300 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Deletion 34300 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Substitution 34561 68.52 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Insertion 34177 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Deletion 34177 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Substitution 34357 71.50 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Insertion 33972 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Deletion 33972 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Substitution 34352 56.20 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Insertion 33975 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Deletion 33975 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Substitution 34263 82.39 26.00 26.63 -0.63 After
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Insertion 33871 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Deletion 33871 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Substitution 34245 63.21 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Insertion 33880 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Deletion 33880 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Substitution 39102 40.01 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Insertion 39102 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Deletion 39102 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Substitution 34002 70.27 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Insertion 33616 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Deletion 33616 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Substitution 33925 64.68 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Insertion 33533 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Deletion 33533 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Substitution 33814 65.25 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Insertion 33410 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Deletion 33410 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Substitution 33800 78.23 26.00 26.67 -0.67 After
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Insertion 33409 0.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Deletion 33409 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Substitution 33724 75.20 26.00 26.50 -0.50 After
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Insertion 33329 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Deletion 33329 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Substitution 33543 73.97 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Insertion 33139 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Deletion 33139 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Substitution 33419 48.21 28.00 26.69 1.31 After
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Insertion 33003 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Deletion 33003 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Substitution 33442 65.71 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Insertion 33029 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Deletion 33029 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Substitution 33253 71.33 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Insertion 32798 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Deletion 32798 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Substitution 33140 73.29 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Insertion 32687 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Deletion 32687 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Substitution 39086 44.09 29.00 28.11 0.89 After
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Insertion 39086 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Deletion 39086 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Substitution 33011 64.28 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Insertion 32550 0.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Deletion 32550 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Substitution 33034 52.45 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Insertion 32570 0.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Deletion 32570 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Substitution 32734 78.43 26.00 26.40 -0.40 After
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Insertion 32268 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Deletion 32268 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Substitution 32718 77.88 26.00 25.70 0.30 After
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Insertion 32265 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Deletion 32265 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Substitution 32545 66.90 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Insertion 32099 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Deletion 32099 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Substitution 32432 76.11 26.00 26.66 -0.66 After
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Insertion 31981 0.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Deletion 31981 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Substitution 32374 67.09 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Insertion 31972 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Deletion 31972 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 147 Cycle Base Substitution 32229 63.44 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L001 148 Cycle Base Substitution 32179 79.21 26.00 26.67 -0.67 After
REGRESSION.HCC1395_tumor.L001 149 Cycle Base Substitution 32045 81.99 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Substitution 39075 34.31 29.00 27.93 1.07 After
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Insertion 39075 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Deletion 39075 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 150 Cycle Base Substitution 31860 78.16 26.00 26.48 -0.48 After
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Substitution 38959 38.85 29.00 28.63 0.37 After
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Insertion 38959 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Deletion 38959 4.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Substitution 38797 33.94 29.00 28.67 0.33 After
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Insertion 38796 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Deletion 38796 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Substitution 38964 30.04 30.00 28.53 1.47 After
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Insertion 38963 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Deletion 38963 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Substitution 39020 27.13 30.00 28.68 1.32 After
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Insertion 39019 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Deletion 39019 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 2 Cycle Base Substitution 39209 76.87 27.00 27.19 -0.19 After
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Substitution 38888 25.18 30.00 28.67 1.33 After
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Insertion 38887 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Deletion 38887 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Substitution 38936 38.08 29.00 28.63 0.37 After
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Insertion 38936 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Deletion 38936 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Substitution 38905 21.20 31.00 29.13 1.87 After
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Insertion 38905 2.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Deletion 38905 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Substitution 38949 27.85 30.00 28.52 1.48 After
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Insertion 38949 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Deletion 38949 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Substitution 38918 25.56 30.00 28.58 1.42 After
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Insertion 38918 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Deletion 38918 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Substitution 38890 28.74 30.00 28.83 1.17 After
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Insertion 38890 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Deletion 38890 5.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Substitution 38992 45.37 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Insertion 38992 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Deletion 38992 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Substitution 38928 29.95 29.00 27.91 1.09 After
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Insertion 38927 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Deletion 38927 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Substitution 38917 43.34 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Insertion 38917 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Deletion 38917 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Substitution 38961 38.48 29.00 28.05 0.95 After
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Insertion 38960 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Deletion 38960 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 3 Cycle Base Substitution 39189 102.28 26.00 27.21 -1.21 After
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Substitution 38899 37.65 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Insertion 38898 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Deletion 38898 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Substitution 38835 38.40 29.00 28.03 0.97 After
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Insertion 38835 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Deletion 38835 5.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Substitution 38868 50.94 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Insertion 38866 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Deletion 38866 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Substitution 38679 48.89 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Insertion 38677 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Deletion 38677 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Substitution 38833 56.09 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Insertion 38831 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Deletion 38831 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Substitution 38799 47.48 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Insertion 38795 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Deletion 38795 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Substitution 38899 49.63 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Insertion 38893 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Deletion 38893 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Substitution 38747 40.82 29.00 28.10 0.90 After
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Insertion 38739 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Deletion 38739 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Substitution 38878 45.23 29.00 28.06 0.94 After
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Insertion 38866 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Deletion 38866 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Substitution 38814 33.66 29.00 28.17 0.83 After
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Insertion 38805 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Deletion 38805 4.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 4 Cycle Base Substitution 39138 77.83 27.00 27.17 -0.17 After
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Substitution 38909 40.83 29.00 28.14 0.86 After
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Insertion 38903 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Deletion 38903 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Substitution 38815 56.65 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Insertion 38809 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Deletion 38809 4.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Substitution 38712 54.49 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Insertion 38708 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Deletion 38708 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Substitution 38699 40.38 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Insertion 38692 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Deletion 38692 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Substitution 38859 42.17 29.00 28.35 0.65 After
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Insertion 38849 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Deletion 38849 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Substitution 38585 40.07 29.00 27.89 1.11 After
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Insertion 38575 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Deletion 38575 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Substitution 38675 39.34 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Insertion 38663 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Deletion 38663 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Substitution 38632 49.39 29.00 28.10 0.90 After
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Insertion 38623 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Deletion 38623 4.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Substitution 38706 44.45 29.00 28.03 0.97 After
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Insertion 38692 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Deletion 38692 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Substitution 38732 38.25 29.00 28.16 0.84 After
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Insertion 38715 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Deletion 38715 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Substitution 39086 52.16 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Insertion 39086 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Deletion 39086 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Substitution 38596 48.43 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Insertion 38570 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Deletion 38570 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Substitution 38601 53.96 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Insertion 38577 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Deletion 38577 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Substitution 38634 46.21 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Insertion 38612 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Deletion 38612 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Substitution 38636 46.54 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Insertion 38613 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Deletion 38613 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Substitution 38527 46.46 28.00 27.73 0.27 After
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Insertion 38502 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Deletion 38502 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Substitution 38613 41.89 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Insertion 38584 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Deletion 38584 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Substitution 38519 50.41 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Insertion 38480 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Deletion 38480 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Substitution 38593 76.84 27.00 27.52 -0.52 After
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Insertion 38542 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Deletion 38542 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Substitution 38533 43.13 29.00 27.62 1.38 After
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Insertion 38479 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Deletion 38479 5.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Substitution 38540 42.71 29.00 28.08 0.92 After
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Insertion 38469 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Deletion 38469 5.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Substitution 39103 59.83 28.00 27.61 0.39 After
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Insertion 39103 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Deletion 39103 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Substitution 38480 54.72 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Insertion 38414 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Deletion 38414 5.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Substitution 38521 52.34 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Insertion 38454 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Deletion 38454 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Substitution 38532 49.48 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Insertion 38459 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Deletion 38459 4.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Substitution 38436 65.72 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Insertion 38359 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Deletion 38359 4.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Substitution 38472 43.35 29.00 27.52 1.48 After
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Insertion 38382 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Deletion 38382 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Substitution 38303 49.66 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Insertion 38219 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Deletion 38219 5.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Substitution 38220 60.44 28.00 27.52 0.48 After
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Insertion 38122 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Deletion 38122 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Substitution 38396 52.29 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Insertion 38290 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Deletion 38290 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Substitution 38350 60.28 28.00 27.83 0.17 After
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Insertion 38237 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Deletion 38237 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Substitution 38240 47.06 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Insertion 38117 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Deletion 38117 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Substitution 39152 46.03 29.00 28.10 0.90 After
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Insertion 39152 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Deletion 39152 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Substitution 38313 53.03 28.00 27.86 0.14 After
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Insertion 38199 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Deletion 38199 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Substitution 38096 49.01 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Insertion 37979 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Deletion 37979 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Substitution 38058 56.07 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Insertion 37936 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Deletion 37936 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Substitution 38155 71.89 27.00 27.16 -0.16 After
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Insertion 38017 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Deletion 38017 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Substitution 38051 55.60 28.00 27.52 0.48 After
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Insertion 37911 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Deletion 37911 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Substitution 38077 60.77 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Insertion 37926 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Deletion 37926 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Substitution 38099 49.52 28.00 27.41 0.59 After
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Insertion 37938 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Deletion 37938 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Substitution 38009 63.92 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Insertion 37852 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Deletion 37852 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Substitution 37794 49.91 28.00 27.38 0.62 After
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Insertion 37619 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Deletion 37619 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Substitution 37743 68.38 27.00 27.12 -0.12 After
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Insertion 37552 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Deletion 37552 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Substitution 39148 43.60 29.00 27.80 1.20 After
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Insertion 39148 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Deletion 39148 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Substitution 37821 58.21 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Insertion 37633 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Deletion 37633 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Substitution 37800 67.59 27.00 27.35 -0.35 After
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Insertion 37602 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Deletion 37602 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Substitution 37729 57.24 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Insertion 37524 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Deletion 37524 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Substitution 37739 77.45 27.00 27.05 -0.05 After
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Insertion 37541 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Deletion 37541 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Substitution 37570 70.91 27.00 27.60 -0.60 After
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Insertion 37348 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Deletion 37348 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Substitution 37617 57.52 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Insertion 37388 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Deletion 37388 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Substitution 37383 64.02 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Insertion 37168 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Deletion 37168 3.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Substitution 37440 57.19 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Insertion 37219 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Deletion 37219 4.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Substitution 37378 64.01 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Insertion 37156 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Deletion 37156 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Substitution 37449 59.25 28.00 27.15 0.85 After
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Insertion 37229 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Deletion 37229 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Substitution 39166 37.41 29.00 27.59 1.41 After
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Insertion 39166 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Deletion 39166 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Substitution 37387 67.49 27.00 27.06 -0.06 After
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Insertion 37148 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Deletion 37148 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Substitution 37317 60.69 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Insertion 37091 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Deletion 37091 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Substitution 37306 77.44 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Insertion 37043 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Deletion 37043 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Substitution 37089 63.95 28.00 27.36 0.64 After
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Insertion 36809 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Deletion 36809 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Substitution 37152 67.13 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Insertion 36873 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Deletion 36873 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Substitution 37060 68.09 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Insertion 36760 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Deletion 36760 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Substitution 37010 72.05 27.00 27.16 -0.16 After
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Insertion 36709 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Deletion 36709 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Substitution 36950 76.24 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Insertion 36661 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Deletion 36661 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Substitution 36692 73.00 27.00 27.32 -0.32 After
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Insertion 36407 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Deletion 36407 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Substitution 36705 67.67 27.00 27.09 -0.09 After
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Insertion 36433 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Deletion 36433 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 10 QualityScore Base Substitution 26734 2854.95 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L001 11 QualityScore Base Substitution 15245 1107.94 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L001 12 QualityScore Base Substitution 11996 719.42 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L001 13 QualityScore Base Substitution 21104 748.26 14.00 13.00 1.00 After
REGRESSION.HCC1395_tumor.L001 14 QualityScore Base Substitution 13192 218.95 17.00 14.00 3.00 After
REGRESSION.HCC1395_tumor.L001 15 QualityScore Base Substitution 17272 13.56 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L001 16 QualityScore Base Substitution 8211 0.78 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L001 17 QualityScore Base Substitution 14371 1.31 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L001 21 QualityScore Base Substitution 103 0.00 21.00 21.00 0.00 After
REGRESSION.HCC1395_tumor.L001 22 QualityScore Base Substitution 30847 238.81 21.00 22.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 23 QualityScore Base Substitution 48896 344.64 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 24 QualityScore Base Substitution 161659 616.09 24.00 24.00 0.00 After
REGRESSION.HCC1395_tumor.L001 25 QualityScore Base Substitution 99901 139.82 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L001 28 QualityScore Base Substitution 7743 3.01 28.00 28.00 0.00 After
REGRESSION.HCC1395_tumor.L001 29 QualityScore Base Substitution 69319 124.14 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 30 QualityScore Base Substitution 2513041 1539.07 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L001 31 QualityScore Base Substitution 2884013 1273.09 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L001 32 QualityScore Base Substitution 4680185 1139.18 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L001 33 QualityScore Base Substitution 398194 68.81 35.00 33.00 2.00 After
REGRESSION.HCC1395_tumor.L001 45 QualityScore Base Insertion 11074895 478.23 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 45 QualityScore Base Deletion 11074895 960.45 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L001 8 QualityScore Base Substitution 1117 208.43 7.00 8.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 9 QualityScore Base Substitution 51752 7388.79 8.00 9.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 AA Context Base Substitution 845812 1915.58 26.00 25.42 0.58 After
REGRESSION.HCC1395_tumor.L002 AAA Context Base Insertion 300711 70.15 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L002 AAA Context Base Deletion 300711 221.20 36.00 45.00 -9.00 After
REGRESSION.HCC1395_tumor.L002 AAC Context Base Insertion 133858 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AAC Context Base Deletion 133858 7.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AAG Context Base Insertion 200918 7.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AAG Context Base Deletion 200918 8.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AAT Context Base Insertion 175873 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AAT Context Base Deletion 175873 13.96 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 AC Context Base Substitution 536687 1895.30 25.00 24.68 0.32 After
REGRESSION.HCC1395_tumor.L002 ACA Context Base Insertion 206755 20.74 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 ACA Context Base Deletion 206755 39.49 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L002 ACC Context Base Insertion 148448 6.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ACC Context Base Deletion 148448 6.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ACG Context Base Insertion 31047 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ACG Context Base Deletion 31047 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ACT Context Base Insertion 159505 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ACT Context Base Deletion 159505 11.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AG Context Base Substitution 811875 635.09 31.00 28.67 2.33 After
REGRESSION.HCC1395_tumor.L002 AGA Context Base Insertion 226389 5.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGA Context Base Deletion 226389 9.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGC Context Base Insertion 194720 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGC Context Base Deletion 194720 9.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGG Context Base Insertion 231032 14.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGG Context Base Deletion 231032 8.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGT Context Base Insertion 155854 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGT Context Base Deletion 155854 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AT Context Base Substitution 608287 633.00 30.00 27.55 2.45 After
REGRESSION.HCC1395_tumor.L002 ATA Context Base Insertion 135412 7.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATA Context Base Deletion 135412 5.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATC Context Base Insertion 123153 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATC Context Base Deletion 123153 9.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATG Context Base Insertion 176334 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATG Context Base Deletion 176334 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATT Context Base Insertion 183623 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATT Context Base Deletion 183623 7.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CA Context Base Substitution 867696 1909.14 27.00 25.72 1.28 After
REGRESSION.HCC1395_tumor.L002 CAA Context Base Insertion 174415 4.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CAA Context Base Deletion 174415 14.06 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 CAC Context Base Insertion 185985 24.96 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 CAC Context Base Deletion 185985 40.64 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L002 CAG Context Base Insertion 296431 7.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CAG Context Base Deletion 296431 8.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CAT Context Base Insertion 172053 8.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CAT Context Base Deletion 172053 5.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CC Context Base Substitution 772786 2403.17 25.00 24.66 0.34 After
REGRESSION.HCC1395_tumor.L002 CCA Context Base Insertion 249053 6.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCA Context Base Deletion 249053 7.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCC Context Base Insertion 213878 13.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCC Context Base Deletion 213878 16.21 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 CCG Context Base Insertion 54076 7.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCG Context Base Deletion 54076 6.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCT Context Base Insertion 245666 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCT Context Base Deletion 245666 9.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CG Context Base Substitution 162112 564.08 25.00 24.78 0.22 After
REGRESSION.HCC1395_tumor.L002 CGA Context Base Insertion 57015 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGA Context Base Deletion 57015 0.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGC Context Base Insertion 81260 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGC Context Base Deletion 81260 8.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGG Context Base Insertion 98058 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGG Context Base Deletion 98058 8.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGT Context Base Insertion 63444 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGT Context Base Deletion 63444 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CT Context Base Substitution 849789 407.26 33.00 29.59 3.41 After
REGRESSION.HCC1395_tumor.L002 CTA Context Base Insertion 97292 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTA Context Base Deletion 97292 7.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTC Context Base Insertion 205666 5.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTC Context Base Deletion 205666 15.58 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 CTG Context Base Insertion 295662 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTG Context Base Deletion 295662 13.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTT Context Base Insertion 212109 6.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTT Context Base Deletion 212109 9.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GA Context Base Substitution 712219 1063.41 28.00 26.50 1.50 After
REGRESSION.HCC1395_tumor.L002 GAA Context Base Insertion 212008 5.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAA Context Base Deletion 212008 6.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAC Context Base Insertion 119459 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAC Context Base Deletion 119459 7.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAG Context Base Insertion 211040 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAG Context Base Deletion 211040 7.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAT Context Base Insertion 127021 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAT Context Base Deletion 127021 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GC Context Base Substitution 670491 1511.44 26.00 25.89 0.11 After
REGRESSION.HCC1395_tumor.L002 GCA Context Base Insertion 207593 5.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCA Context Base Deletion 207593 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCC Context Base Insertion 201931 4.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCC Context Base Deletion 201931 12.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCG Context Base Insertion 49131 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCG Context Base Deletion 49131 6.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCT Context Base Insertion 212290 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCT Context Base Deletion 212290 5.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GG Context Base Substitution 798819 730.19 30.00 27.63 2.37 After
REGRESSION.HCC1395_tumor.L002 GGA Context Base Insertion 217033 22.44 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 GGA Context Base Deletion 217033 14.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GGC Context Base Insertion 198736 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GGC Context Base Deletion 198736 6.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GGG Context Base Insertion 220111 9.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GGG Context Base Deletion 220111 28.25 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 GGT Context Base Insertion 160316 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GGT Context Base Deletion 160316 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GT Context Base Substitution 596023 1025.01 28.00 26.85 1.15 After
REGRESSION.HCC1395_tumor.L002 GTA Context Base Insertion 102374 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GTA Context Base Deletion 102374 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GTC Context Base Insertion 127749 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GTC Context Base Deletion 127749 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GTG Context Base Insertion 202323 17.38 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 GTG Context Base Deletion 202323 32.77 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 GTT Context Base Insertion 150389 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GTT Context Base Deletion 150389 11.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TA Context Base Substitution 487227 1251.30 26.00 24.88 1.12 After
REGRESSION.HCC1395_tumor.L002 TAA Context Base Insertion 151391 11.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAA Context Base Deletion 151391 17.55 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 TAC Context Base Insertion 93954 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAC Context Base Deletion 93954 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAG Context Base Insertion 97233 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAG Context Base Deletion 97233 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAT Context Base Insertion 128916 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAT Context Base Deletion 128916 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TC Context Base Substitution 655582 1671.66 26.00 25.42 0.58 After
REGRESSION.HCC1395_tumor.L002 TCA Context Base Insertion 197473 6.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCA Context Base Deletion 197473 11.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCC Context Base Insertion 203498 28.89 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 TCC Context Base Deletion 203498 8.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCG Context Base Insertion 26638 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCG Context Base Deletion 26638 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCT Context Base Insertion 226583 7.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCT Context Base Deletion 226583 13.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TG Context Base Substitution 853288 369.32 33.00 29.35 3.65 After
REGRESSION.HCC1395_tumor.L002 TGA Context Base Insertion 206450 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGA Context Base Deletion 206450 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGC Context Base Insertion 191449 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGC Context Base Deletion 191449 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGG Context Base Insertion 243818 6.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGG Context Base Deletion 243818 7.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGT Context Base Insertion 212478 16.48 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 TGT Context Base Deletion 212478 35.71 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L002 TT Context Base Substitution 848969 933.74 30.00 28.22 1.78 After
REGRESSION.HCC1395_tumor.L002 TTA Context Base Insertion 148568 10.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTA Context Base Deletion 148568 8.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTC Context Base Insertion 195075 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTC Context Base Deletion 195075 9.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTG Context Base Insertion 172945 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTG Context Base Deletion 172945 5.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTT Context Base Insertion 297087 64.87 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L002 TTT Context Base Deletion 297087 156.89 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L002 -1 Cycle Base Substitution 39032 179.47 23.00 23.56 -0.56 After
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Substitution 39233 53.60 28.00 27.35 0.65 After
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Insertion 39233 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Deletion 39233 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Substitution 36766 82.39 26.00 26.49 -0.49 After
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Insertion 36459 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Deletion 36459 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Substitution 36716 69.29 27.00 26.30 0.70 After
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Insertion 36374 4.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Deletion 36374 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Substitution 36609 83.95 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Insertion 36296 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Deletion 36296 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Substitution 36567 80.29 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Insertion 36229 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Deletion 36229 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Substitution 36664 74.70 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Insertion 36311 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Deletion 36311 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Substitution 36508 58.68 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Insertion 36191 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Deletion 36191 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Substitution 36332 78.27 27.00 26.28 0.72 After
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Insertion 36018 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Deletion 36018 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Substitution 36264 73.89 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Insertion 35953 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Deletion 35953 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Substitution 36163 88.27 26.00 25.64 0.36 After
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Insertion 35869 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Deletion 35869 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Substitution 36054 64.70 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Insertion 35745 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Deletion 35745 4.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Substitution 39203 45.32 29.00 27.56 1.44 After
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Insertion 39202 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Deletion 39202 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Substitution 35991 90.04 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Insertion 35659 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Deletion 35659 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Substitution 36016 76.59 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Insertion 35695 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Deletion 35695 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Substitution 35838 91.77 26.00 25.52 0.48 After
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Insertion 35509 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Deletion 35509 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Substitution 35829 82.61 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Insertion 35514 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Deletion 35514 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Substitution 35678 81.00 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Insertion 35353 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Deletion 35353 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Substitution 35603 74.35 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Insertion 35271 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Deletion 35271 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Substitution 35644 70.99 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Insertion 35284 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Deletion 35284 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Substitution 35319 81.58 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Insertion 34935 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Deletion 34935 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Substitution 35359 79.60 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Insertion 34978 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Deletion 34978 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Substitution 35193 101.83 26.00 26.16 -0.16 After
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Insertion 34799 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Deletion 34799 2.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Substitution 39299 59.26 28.00 27.75 0.25 After
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Insertion 39298 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Deletion 39298 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Substitution 35120 90.74 26.00 26.07 -0.07 After
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Insertion 34756 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Deletion 34756 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Substitution 35059 86.61 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Insertion 34708 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Deletion 34708 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Substitution 35074 70.81 27.00 26.30 0.70 After
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Insertion 34698 0.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Deletion 34698 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Substitution 34979 72.61 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Insertion 34610 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Deletion 34610 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Substitution 34810 78.11 26.00 26.23 -0.23 After
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Insertion 34467 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Deletion 34467 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Substitution 34669 73.20 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Insertion 34298 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Deletion 34298 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Substitution 34649 97.23 25.00 25.63 -0.63 After
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Insertion 34278 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Deletion 34278 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Substitution 34430 95.00 26.00 25.59 0.41 After
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Insertion 34066 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Deletion 34066 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Substitution 34445 73.59 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Insertion 34050 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Deletion 34050 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Substitution 34334 76.40 27.00 26.12 0.88 After
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Insertion 33943 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Deletion 33943 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Substitution 39313 61.05 28.00 27.82 0.18 After
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Insertion 39313 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Deletion 39313 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Substitution 34258 69.76 27.00 26.15 0.85 After
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Insertion 33891 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Deletion 33891 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Substitution 34160 81.45 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Insertion 33769 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Deletion 33769 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Substitution 34136 82.86 26.00 25.91 0.09 After
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Insertion 33721 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Deletion 33721 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Substitution 33939 68.49 27.00 26.10 0.90 After
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Insertion 33524 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Deletion 33524 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Substitution 33858 80.15 26.00 26.09 -0.09 After
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Insertion 33416 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Deletion 33416 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Substitution 33718 94.94 25.00 25.53 -0.53 After
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Insertion 33288 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Deletion 33288 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Substitution 33575 73.36 27.00 26.11 0.89 After
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Insertion 33127 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Deletion 33127 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Substitution 33610 72.73 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Insertion 33146 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Deletion 33146 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Substitution 33400 91.84 26.00 26.07 -0.07 After
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Insertion 32931 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Deletion 32931 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Substitution 33301 72.09 26.00 25.89 0.11 After
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Insertion 32802 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Deletion 32802 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Substitution 39259 57.14 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Insertion 39258 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Deletion 39258 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Substitution 33187 75.20 26.00 25.73 0.27 After
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Insertion 32657 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Deletion 32657 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Substitution 33205 75.18 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Insertion 32628 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Deletion 32628 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Substitution 33022 69.18 27.00 26.16 0.84 After
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Insertion 32336 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Deletion 32336 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Substitution 32868 50.23 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Insertion 32144 0.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Deletion 32144 0.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Substitution 32745 47.16 28.00 26.75 1.25 After
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Insertion 31999 0.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Deletion 31999 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Substitution 32651 51.21 27.00 26.23 0.77 After
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Insertion 25139 0.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Deletion 25139 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Substitution 32344 23.08 28.00 26.15 1.85 After
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Insertion 25006 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Deletion 25006 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -147 Cycle Base Substitution 32220 17.27 26.00 22.36 3.64 After
REGRESSION.HCC1395_tumor.L002 -148 Cycle Base Substitution 31921 22.20 23.00 15.18 7.82 After
REGRESSION.HCC1395_tumor.L002 -149 Cycle Base Substitution 19827 24.44 22.00 14.17 7.83 After
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Substitution 39230 62.02 28.00 27.56 0.44 After
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Insertion 39230 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Deletion 39230 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -150 Cycle Base Substitution 6978 12.53 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Substitution 39312 54.94 28.00 27.86 0.14 After
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Insertion 39312 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Deletion 39312 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Substitution 39261 62.47 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Insertion 39261 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Deletion 39261 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Substitution 39155 68.12 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Insertion 39154 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Deletion 39154 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Substitution 39258 66.29 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Insertion 39257 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Deletion 39257 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -2 Cycle Base Substitution 39393 140.75 25.00 25.48 -0.48 After
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Substitution 39199 54.31 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Insertion 39197 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Deletion 39197 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Substitution 39147 55.24 28.00 27.72 0.28 After
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Insertion 39145 0.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Deletion 39145 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Substitution 39070 58.40 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Insertion 39069 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Deletion 39069 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Substitution 39198 48.04 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Insertion 39197 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Deletion 39197 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Substitution 39192 53.49 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Insertion 39191 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Deletion 39191 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Substitution 39127 57.51 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Insertion 39126 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Deletion 39126 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Substitution 39126 49.89 28.00 26.67 1.33 After
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Insertion 39125 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Deletion 39125 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Substitution 39148 53.63 28.00 26.59 1.41 After
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Insertion 39146 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Deletion 39146 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Substitution 39099 64.38 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Insertion 39096 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Deletion 39096 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Substitution 39224 64.45 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Insertion 39220 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Deletion 39220 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -3 Cycle Base Substitution 39490 137.15 25.00 26.40 -1.40 After
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Substitution 39123 59.71 28.00 26.39 1.61 After
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Insertion 39118 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Deletion 39118 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Substitution 39092 69.44 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Insertion 39088 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Deletion 39088 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Substitution 39180 52.74 28.00 26.76 1.24 After
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Insertion 39175 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Deletion 39175 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Substitution 39095 61.87 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Insertion 39089 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Deletion 39089 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Substitution 39070 59.63 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Insertion 39063 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Deletion 39063 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Substitution 39082 63.61 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Insertion 39074 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Deletion 39074 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Substitution 39014 54.24 28.00 26.56 1.44 After
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Insertion 39010 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Deletion 39010 5.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Substitution 39081 60.23 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Insertion 39073 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Deletion 39073 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Substitution 38996 62.84 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Insertion 38990 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Deletion 38990 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Substitution 39020 63.69 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Insertion 39015 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Deletion 39015 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -4 Cycle Base Substitution 39430 80.64 27.00 26.09 0.91 After
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Substitution 38964 60.78 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Insertion 38960 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Deletion 38960 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Substitution 38963 60.81 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Insertion 38962 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Deletion 38962 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Substitution 38905 54.36 28.00 26.60 1.40 After
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Insertion 38904 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Deletion 38904 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Substitution 39023 66.41 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Insertion 39018 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Deletion 39018 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Substitution 38799 56.63 28.00 26.76 1.24 After
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Insertion 38793 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Deletion 38793 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Substitution 38971 51.16 28.00 26.90 1.10 After
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Insertion 38962 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Deletion 38962 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Substitution 38926 64.72 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Insertion 38915 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Deletion 38915 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Substitution 38916 50.78 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Insertion 38909 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Deletion 38909 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Substitution 38831 46.78 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Insertion 38821 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Deletion 38821 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Substitution 38911 68.30 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Insertion 38896 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Deletion 38896 5.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Substitution 39374 65.69 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Insertion 39374 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Deletion 39374 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Substitution 38745 65.16 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Insertion 38716 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Deletion 38716 5.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Substitution 38791 55.57 28.00 26.71 1.29 After
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Insertion 38755 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Deletion 38755 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Substitution 38812 64.28 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Insertion 38774 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Deletion 38774 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Substitution 38749 58.03 28.00 26.88 1.12 After
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Insertion 38712 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Deletion 38712 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Substitution 38822 63.28 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Insertion 38791 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Deletion 38791 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Substitution 38926 63.07 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Insertion 38891 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Deletion 38891 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Substitution 38772 67.10 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Insertion 38734 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Deletion 38734 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Substitution 38727 64.55 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Insertion 38672 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Deletion 38672 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Substitution 38839 56.64 28.00 26.99 1.01 After
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Insertion 38775 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Deletion 38775 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Substitution 38785 59.65 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Insertion 38715 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Deletion 38715 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Substitution 39329 68.19 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Insertion 39329 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Deletion 39329 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Substitution 38601 65.41 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Insertion 38529 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Deletion 38529 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Substitution 38777 71.30 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Insertion 38701 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Deletion 38701 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Substitution 38606 55.39 28.00 27.20 0.80 After
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Insertion 38531 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Deletion 38531 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Substitution 38581 58.25 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Insertion 38513 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Deletion 38513 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Substitution 38605 53.75 28.00 26.98 1.02 After
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Insertion 38523 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Deletion 38523 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Substitution 38483 68.58 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Insertion 38392 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Deletion 38392 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Substitution 38463 64.37 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Insertion 38375 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Deletion 38375 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Substitution 38478 51.27 28.00 26.88 1.12 After
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Insertion 38369 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Deletion 38369 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Substitution 38428 71.77 27.00 27.13 -0.13 After
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Insertion 38318 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Deletion 38318 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Substitution 38459 54.47 28.00 26.68 1.32 After
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Insertion 38353 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Deletion 38353 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Substitution 39310 65.08 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Insertion 39310 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Deletion 39310 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Substitution 38448 63.16 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Insertion 38328 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Deletion 38328 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Substitution 38410 64.85 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Insertion 38282 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Deletion 38282 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Substitution 38396 73.72 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Insertion 38259 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Deletion 38259 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Substitution 38400 63.78 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Insertion 38271 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Deletion 38271 4.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Substitution 38191 64.62 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Insertion 38059 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Deletion 38059 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Substitution 38243 62.45 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Insertion 38093 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Deletion 38093 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Substitution 38123 74.90 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Insertion 37983 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Deletion 37983 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Substitution 38170 64.33 28.00 27.06 0.94 After
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Insertion 38015 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Deletion 38015 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Substitution 38202 75.20 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Insertion 38032 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Deletion 38032 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Substitution 38150 74.54 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Insertion 37975 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Deletion 37975 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Substitution 39242 60.37 28.00 26.97 1.03 After
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Insertion 39242 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Deletion 39242 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Substitution 38102 80.20 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Insertion 37907 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Deletion 37907 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Substitution 38006 64.79 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Insertion 37801 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Deletion 37801 5.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Substitution 38081 74.65 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Insertion 37868 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Deletion 37868 5.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Substitution 37932 74.71 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Insertion 37719 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Deletion 37719 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Substitution 37845 69.34 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Insertion 37630 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Deletion 37630 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Substitution 37786 59.70 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Insertion 37562 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Deletion 37562 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Substitution 37746 79.72 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Insertion 37519 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Deletion 37519 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Substitution 37790 56.45 28.00 26.64 1.36 After
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Insertion 37542 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Deletion 37542 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Substitution 37760 69.39 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Insertion 37511 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Deletion 37511 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Substitution 37620 71.52 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Insertion 37364 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Deletion 37364 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Substitution 39326 42.54 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Insertion 39326 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Deletion 39326 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Substitution 37377 88.61 26.00 25.71 0.29 After
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Insertion 37122 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Deletion 37122 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Substitution 37585 63.42 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Insertion 37332 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Deletion 37332 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Substitution 37534 88.56 26.00 25.97 0.03 After
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Insertion 37289 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Deletion 37289 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Substitution 37328 76.77 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Insertion 37074 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Deletion 37074 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Substitution 37282 91.36 26.00 25.76 0.24 After
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Insertion 37015 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Deletion 37015 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Substitution 37138 72.03 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Insertion 36872 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Deletion 36872 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Substitution 37141 62.66 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Insertion 36863 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Deletion 36863 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Substitution 37010 68.53 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Insertion 36738 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Deletion 36738 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Substitution 36968 80.73 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Insertion 36668 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Deletion 36668 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Substitution 36849 82.36 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Insertion 36543 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Deletion 36543 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 1 Cycle Base Substitution 39038 77.46 27.00 25.86 1.14 After
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Substitution 39399 55.68 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Insertion 39399 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Deletion 39399 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Substitution 36864 74.79 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Insertion 36555 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Deletion 36555 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Substitution 36736 80.21 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Insertion 36412 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Deletion 36412 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Substitution 36837 82.12 26.00 26.54 -0.54 After
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Insertion 36532 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Deletion 36532 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Substitution 36648 59.98 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Insertion 36319 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Deletion 36319 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Substitution 36567 69.27 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Insertion 36226 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Deletion 36226 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Substitution 36517 53.98 28.00 26.49 1.51 After
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Insertion 36193 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Deletion 36193 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Substitution 36422 71.38 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Insertion 36096 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Deletion 36096 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Substitution 36390 67.32 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Insertion 36092 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Deletion 36092 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Substitution 36192 91.18 26.00 26.47 -0.47 After
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Insertion 35899 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Deletion 35899 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Substitution 36179 76.02 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Insertion 35866 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Deletion 35866 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Substitution 39329 40.46 29.00 27.48 1.52 After
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Insertion 39329 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Deletion 39329 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Substitution 36094 72.12 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Insertion 35773 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Deletion 35773 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Substitution 36066 75.86 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Insertion 35749 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Deletion 35749 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Substitution 35871 77.38 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Insertion 35564 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Deletion 35564 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Substitution 35751 67.86 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Insertion 35458 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Deletion 35458 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Substitution 35848 80.43 26.00 26.66 -0.66 After
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Insertion 35530 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Deletion 35530 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Substitution 35602 75.90 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Insertion 35278 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Deletion 35278 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Substitution 35485 75.50 27.00 26.30 0.70 After
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Insertion 35125 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Deletion 35125 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Substitution 35522 81.33 26.00 25.78 0.22 After
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Insertion 35147 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Deletion 35147 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Substitution 35438 72.81 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Insertion 35057 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Deletion 35057 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Substitution 35333 65.53 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Insertion 34959 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Deletion 34959 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Substitution 39273 42.48 29.00 27.52 1.48 After
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Insertion 39273 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Deletion 39273 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Substitution 35229 71.55 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Insertion 34868 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Deletion 34868 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Substitution 35181 88.61 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Insertion 34844 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Deletion 34844 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Substitution 34980 69.22 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Insertion 34622 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Deletion 34622 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Substitution 35093 68.30 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Insertion 34751 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Deletion 34751 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Substitution 34979 83.16 26.00 25.89 0.11 After
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Insertion 34622 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Deletion 34622 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Substitution 34759 83.12 26.00 26.24 -0.24 After
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Insertion 34396 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Deletion 34396 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Substitution 34713 76.37 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Insertion 34364 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Deletion 34364 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Substitution 34650 61.12 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Insertion 34277 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Deletion 34277 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Substitution 34435 73.61 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Insertion 34051 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Deletion 34051 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Substitution 34467 64.31 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Insertion 34088 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Deletion 34088 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Substitution 39330 43.51 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Insertion 39330 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Deletion 39330 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Substitution 34436 70.66 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Insertion 34091 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Deletion 34091 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Substitution 34293 84.89 26.00 25.70 0.30 After
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Insertion 33921 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Deletion 33921 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Substitution 34159 80.64 26.00 25.81 0.19 After
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Insertion 33783 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Deletion 33783 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Substitution 34121 78.79 26.00 25.83 0.17 After
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Insertion 33718 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Deletion 33718 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Substitution 34161 67.99 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Insertion 33738 0.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Deletion 33738 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Substitution 33893 80.26 26.00 26.33 -0.33 After
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Insertion 33474 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Deletion 33474 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Substitution 33864 62.48 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Insertion 33452 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Deletion 33452 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Substitution 33744 80.88 26.00 26.24 -0.24 After
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Insertion 33310 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Deletion 33310 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Substitution 33624 82.52 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Insertion 33212 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Deletion 33212 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Substitution 33614 103.04 25.00 25.47 -0.47 After
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Insertion 33172 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Deletion 33172 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Substitution 39279 39.08 29.00 27.38 1.62 After
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Insertion 39279 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Deletion 39279 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Substitution 33402 70.05 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Insertion 32980 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Deletion 32980 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Substitution 33269 74.43 26.00 26.41 -0.41 After
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Insertion 32848 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Deletion 32848 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Substitution 33192 84.51 26.00 25.73 0.27 After
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Insertion 32691 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Deletion 32691 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Substitution 33027 75.85 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Insertion 32518 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Deletion 32518 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Substitution 32978 82.14 26.00 26.26 -0.26 After
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Insertion 32454 0.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Deletion 32454 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Substitution 32784 72.54 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Insertion 32268 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Deletion 32268 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Substitution 32647 71.53 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Insertion 32191 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Deletion 32191 0.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 147 Cycle Base Substitution 32636 77.27 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L002 148 Cycle Base Substitution 32537 107.56 25.00 26.37 -1.37 After
REGRESSION.HCC1395_tumor.L002 149 Cycle Base Substitution 32391 86.40 26.00 26.25 -0.25 After
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Substitution 39300 37.98 29.00 27.85 1.15 After
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Insertion 39300 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Deletion 39300 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 150 Cycle Base Substitution 32207 74.18 26.00 26.44 -0.44 After
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Substitution 39206 32.13 30.00 28.61 1.39 After
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Insertion 39206 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Deletion 39206 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Substitution 39236 35.83 29.00 28.32 0.68 After
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Insertion 39236 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Deletion 39236 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Substitution 39453 24.03 30.00 28.58 1.42 After
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Insertion 39452 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Deletion 39452 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Substitution 39081 33.17 30.00 28.66 1.34 After
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Insertion 39080 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Deletion 39080 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 2 Cycle Base Substitution 39515 90.17 26.00 26.98 -0.98 After
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Substitution 39184 31.17 30.00 28.39 1.61 After
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Insertion 39183 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Deletion 39183 4.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Substitution 39236 37.23 29.00 28.48 0.52 After
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Insertion 39235 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Deletion 39235 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Substitution 39194 33.12 30.00 28.78 1.22 After
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Insertion 39194 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Deletion 39194 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Substitution 39261 24.00 30.00 28.47 1.53 After
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Insertion 39261 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Deletion 39261 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Substitution 39133 28.89 30.00 28.61 1.39 After
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Insertion 39133 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Deletion 39133 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Substitution 39129 32.86 30.00 28.62 1.38 After
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Insertion 39129 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Deletion 39129 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Substitution 39248 41.18 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Insertion 39248 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Deletion 39248 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Substitution 39221 38.63 29.00 28.02 0.98 After
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Insertion 39221 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Deletion 39221 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Substitution 39118 43.38 29.00 28.15 0.85 After
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Insertion 39118 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Deletion 39118 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Substitution 39096 40.18 29.00 28.08 0.92 After
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Insertion 39095 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Deletion 39095 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 3 Cycle Base Substitution 39719 107.25 26.00 26.85 -0.85 After
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Substitution 39111 36.51 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Insertion 39109 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Deletion 39109 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Substitution 39174 35.68 29.00 27.82 1.18 After
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Insertion 39172 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Deletion 39172 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Substitution 39171 61.94 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Insertion 39168 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Deletion 39168 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Substitution 39205 40.20 29.00 27.89 1.11 After
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Insertion 39201 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Deletion 39201 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Substitution 39201 46.85 28.00 27.82 0.18 After
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Insertion 39198 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Deletion 39198 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Substitution 39170 49.65 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Insertion 39168 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Deletion 39168 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Substitution 38997 59.17 28.00 27.87 0.13 After
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Insertion 38994 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Deletion 38994 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Substitution 39163 45.84 29.00 28.46 0.54 After
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Insertion 39161 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Deletion 39161 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Substitution 39029 34.21 29.00 27.75 1.25 After
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Insertion 39027 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Deletion 39027 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Substitution 39087 44.66 29.00 28.01 0.99 After
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Insertion 39085 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Deletion 39085 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 4 Cycle Base Substitution 39478 61.07 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Substitution 39185 44.36 29.00 27.85 1.15 After
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Insertion 39182 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Deletion 39182 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Substitution 39032 57.96 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Insertion 39029 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Deletion 39029 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Substitution 39118 33.05 29.00 27.68 1.32 After
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Insertion 39114 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Deletion 39114 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Substitution 38883 51.12 28.00 27.59 0.41 After
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Insertion 38875 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Deletion 38875 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Substitution 39051 43.33 29.00 27.90 1.10 After
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Insertion 39041 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Deletion 39041 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Substitution 39059 51.14 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Insertion 39046 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Deletion 39046 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Substitution 39142 38.06 29.00 27.53 1.47 After
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Insertion 39129 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Deletion 39129 5.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Substitution 39042 56.04 28.00 27.58 0.42 After
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Insertion 39031 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Deletion 39031 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Substitution 38908 40.08 29.00 27.62 1.38 After
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Insertion 38895 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Deletion 38895 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Substitution 38871 39.53 29.00 27.66 1.34 After
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Insertion 38851 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Deletion 38851 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Substitution 39574 44.39 29.00 27.63 1.37 After
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Insertion 39574 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Deletion 39574 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Substitution 38918 45.80 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Insertion 38895 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Deletion 38895 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Substitution 38943 56.22 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Insertion 38912 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Deletion 38912 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Substitution 38902 52.49 28.00 27.54 0.46 After
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Insertion 38872 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Deletion 38872 5.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Substitution 38978 56.39 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Insertion 38943 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Deletion 38943 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Substitution 39033 61.08 28.00 27.90 0.10 After
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Insertion 39002 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Deletion 39002 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Substitution 38876 44.48 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Insertion 38841 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Deletion 38841 4.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Substitution 38772 51.83 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Insertion 38735 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Deletion 38735 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Substitution 38716 61.25 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Insertion 38666 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Deletion 38666 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Substitution 38828 42.44 29.00 27.45 1.55 After
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Insertion 38760 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Deletion 38760 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Substitution 38772 42.49 29.00 27.50 1.50 After
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Insertion 38703 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Deletion 38703 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Substitution 39450 44.95 29.00 28.12 0.88 After
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Insertion 39450 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Deletion 39450 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Substitution 38799 42.17 29.00 27.81 1.19 After
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Insertion 38724 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Deletion 38724 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Substitution 38688 47.14 28.00 27.61 0.39 After
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Insertion 38608 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Deletion 38608 5.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Substitution 38614 42.32 29.00 27.38 1.62 After
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Insertion 38532 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Deletion 38532 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Substitution 38686 60.87 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Insertion 38612 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Deletion 38612 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Substitution 38673 57.17 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Insertion 38593 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Deletion 38593 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Substitution 38648 47.93 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Insertion 38553 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Deletion 38553 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Substitution 38673 42.27 29.00 27.44 1.56 After
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Insertion 38581 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Deletion 38581 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Substitution 38636 52.96 28.00 27.34 0.66 After
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Insertion 38534 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Deletion 38534 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Substitution 38558 60.14 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Insertion 38447 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Deletion 38447 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Substitution 38503 46.91 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Insertion 38391 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Deletion 38391 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Substitution 39398 48.16 28.00 27.29 0.71 After
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Insertion 39398 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Deletion 39398 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Substitution 38592 49.53 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Insertion 38483 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Deletion 38483 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Substitution 38510 59.44 28.00 27.37 0.63 After
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Insertion 38390 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Deletion 38390 5.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Substitution 38462 57.97 28.00 27.31 0.69 After
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Insertion 38331 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Deletion 38331 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Substitution 38490 67.63 27.00 27.13 -0.13 After
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Insertion 38361 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Deletion 38361 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Substitution 38347 69.05 27.00 27.10 -0.10 After
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Insertion 38210 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Deletion 38210 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Substitution 38408 51.28 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Insertion 38252 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Deletion 38252 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Substitution 38331 55.18 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Insertion 38190 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Deletion 38190 4.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Substitution 38189 71.64 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Insertion 38033 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Deletion 38033 4.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Substitution 38165 61.14 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Insertion 37993 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Deletion 37993 4.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Substitution 38156 62.68 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Insertion 37981 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Deletion 37981 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Substitution 39420 35.00 29.00 28.07 0.93 After
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Insertion 39420 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Deletion 39420 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Substitution 38050 63.53 28.00 27.15 0.85 After
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Insertion 37856 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Deletion 37856 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Substitution 38049 63.51 28.00 27.14 0.86 After
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Insertion 37836 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Deletion 37836 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Substitution 37946 67.76 27.00 27.11 -0.11 After
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Insertion 37744 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Deletion 37744 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Substitution 37918 51.41 28.00 27.05 0.95 After
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Insertion 37711 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Deletion 37711 4.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Substitution 37930 57.83 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Insertion 37730 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Deletion 37730 4.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Substitution 37828 67.93 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Insertion 37610 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Deletion 37610 5.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Substitution 37781 66.84 27.00 27.05 -0.05 After
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Insertion 37557 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Deletion 37557 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Substitution 37862 64.11 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Insertion 37625 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Deletion 37625 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Substitution 37679 52.64 28.00 27.32 0.68 After
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Insertion 37432 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Deletion 37432 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Substitution 37597 62.47 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Insertion 37344 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Deletion 37344 4.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Substitution 39323 30.22 30.00 28.07 1.93 After
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Insertion 39323 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Deletion 39323 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Substitution 37566 63.32 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Insertion 37312 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Deletion 37312 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Substitution 37401 68.14 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Insertion 37163 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Deletion 37163 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Substitution 37389 63.45 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Insertion 37155 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Deletion 37155 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Substitution 37448 72.54 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Insertion 37196 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Deletion 37196 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Substitution 37341 78.48 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Insertion 37089 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Deletion 37089 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Substitution 37227 59.06 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Insertion 36978 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Deletion 36978 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Substitution 37193 67.44 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Insertion 36914 2.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Deletion 36914 4.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Substitution 37114 58.18 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Insertion 36849 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Deletion 36849 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Substitution 37011 59.92 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Insertion 36720 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Deletion 36720 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Substitution 36891 64.18 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Insertion 36588 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Deletion 36588 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 10 QualityScore Base Substitution 15320 1511.30 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L002 11 QualityScore Base Substitution 15579 1124.36 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L002 12 QualityScore Base Substitution 20833 1232.85 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L002 13 QualityScore Base Substitution 7162 77.60 17.00 13.00 4.00 After
REGRESSION.HCC1395_tumor.L002 14 QualityScore Base Substitution 25028 351.16 18.00 14.00 4.00 After
REGRESSION.HCC1395_tumor.L002 15 QualityScore Base Substitution 17892 13.85 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L002 16 QualityScore Base Substitution 14640 3.91 22.00 16.00 6.00 After
REGRESSION.HCC1395_tumor.L002 22 QualityScore Base Substitution 8173 2.18 24.00 22.00 2.00 After
REGRESSION.HCC1395_tumor.L002 23 QualityScore Base Substitution 101691 667.03 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 24 QualityScore Base Substitution 109499 393.31 24.00 24.00 0.00 After
REGRESSION.HCC1395_tumor.L002 25 QualityScore Base Substitution 128640 206.44 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L002 28 QualityScore Base Substitution 7958 0.09 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L002 29 QualityScore Base Substitution 69121 117.35 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 30 QualityScore Base Substitution 2520772 1549.46 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L002 31 QualityScore Base Substitution 2900795 1296.10 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L002 32 QualityScore Base Substitution 4705920 1116.97 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L002 33 QualityScore Base Substitution 419080 78.76 35.00 33.00 2.00 After
REGRESSION.HCC1395_tumor.L002 45 QualityScore Base Insertion 11155742 526.57 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L002 45 QualityScore Base Deletion 11155742 992.82 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L002 7 QualityScore Base Substitution 562 124.05 7.00 7.00 0.00 After
REGRESSION.HCC1395_tumor.L002 8 QualityScore Base Substitution 11607 1963.35 8.00 8.00 0.00 After
REGRESSION.HCC1395_tumor.L002 9 QualityScore Base Substitution 55470 7346.49 9.00 9.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AA Context Base Substitution 830015 1886.02 26.00 24.93 1.07 After
REGRESSION.HCC1395_tumor.L003 AAA Context Base Insertion 294437 61.67 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L003 AAA Context Base Deletion 294437 185.61 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L003 AAC Context Base Insertion 131357 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AAC Context Base Deletion 131357 9.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AAG Context Base Insertion 198000 7.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AAG Context Base Deletion 198000 7.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AAT Context Base Insertion 172200 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AAT Context Base Deletion 172200 14.76 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 AC Context Base Substitution 529837 1814.79 25.00 24.72 0.28 After
REGRESSION.HCC1395_tumor.L003 ACA Context Base Insertion 204285 16.98 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 ACA Context Base Deletion 204285 36.76 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L003 ACC Context Base Insertion 146154 10.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ACC Context Base Deletion 146154 5.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ACG Context Base Insertion 30760 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ACG Context Base Deletion 30760 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ACT Context Base Insertion 157230 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ACT Context Base Deletion 157230 11.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AG Context Base Substitution 798658 623.03 31.00 28.66 2.34 After
REGRESSION.HCC1395_tumor.L003 AGA Context Base Insertion 221496 5.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGA Context Base Deletion 221496 11.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGC Context Base Insertion 192378 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGC Context Base Deletion 192378 5.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGG Context Base Insertion 227410 12.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGG Context Base Deletion 227410 8.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGT Context Base Insertion 153841 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGT Context Base Deletion 153841 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AT Context Base Substitution 599449 626.26 30.00 27.54 2.46 After
REGRESSION.HCC1395_tumor.L003 ATA Context Base Insertion 134243 8.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATA Context Base Deletion 134243 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATC Context Base Insertion 120439 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATC Context Base Deletion 120439 8.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATG Context Base Insertion 173808 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATG Context Base Deletion 173808 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATT Context Base Insertion 181306 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATT Context Base Deletion 181306 9.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CA Context Base Substitution 853460 1832.72 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L003 CAA Context Base Insertion 170570 8.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CAA Context Base Deletion 170570 12.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CAC Context Base Insertion 183584 21.60 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 CAC Context Base Deletion 183584 35.79 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L003 CAG Context Base Insertion 291397 9.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CAG Context Base Deletion 291397 11.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CAT Context Base Insertion 170052 7.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CAT Context Base Deletion 170052 7.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CC Context Base Substitution 763422 2440.09 25.00 24.57 0.43 After
REGRESSION.HCC1395_tumor.L003 CCA Context Base Insertion 244335 7.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCA Context Base Deletion 244335 8.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCC Context Base Insertion 211971 14.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCC Context Base Deletion 211971 18.73 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 CCG Context Base Insertion 54011 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCG Context Base Deletion 54011 6.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCT Context Base Insertion 242654 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCT Context Base Deletion 242654 11.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CG Context Base Substitution 161584 514.61 25.00 24.72 0.28 After
REGRESSION.HCC1395_tumor.L003 CGA Context Base Insertion 56435 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGA Context Base Deletion 56435 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGC Context Base Insertion 80444 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGC Context Base Deletion 80444 5.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGG Context Base Insertion 98622 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGG Context Base Deletion 98622 11.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGT Context Base Insertion 62481 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGT Context Base Deletion 62481 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CT Context Base Substitution 838043 366.30 33.00 29.56 3.44 After
REGRESSION.HCC1395_tumor.L003 CTA Context Base Insertion 96706 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTA Context Base Deletion 96706 7.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTC Context Base Insertion 201653 8.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTC Context Base Deletion 201653 17.82 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 CTG Context Base Insertion 291422 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTG Context Base Deletion 291422 14.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTT Context Base Insertion 209943 10.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTT Context Base Deletion 209943 9.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GA Context Base Substitution 699237 997.52 28.00 26.53 1.47 After
REGRESSION.HCC1395_tumor.L003 GAA Context Base Insertion 208454 6.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAA Context Base Deletion 208454 8.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAC Context Base Insertion 117756 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAC Context Base Deletion 117756 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAG Context Base Insertion 206323 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAG Context Base Deletion 206323 12.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAT Context Base Insertion 124909 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAT Context Base Deletion 124909 5.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GC Context Base Substitution 662504 1474.41 27.00 25.89 1.11 After
REGRESSION.HCC1395_tumor.L003 GCA Context Base Insertion 203822 5.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCA Context Base Deletion 203822 7.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCC Context Base Insertion 199092 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCC Context Base Deletion 199092 9.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCG Context Base Insertion 49199 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCG Context Base Deletion 49199 7.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCT Context Base Insertion 209447 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCT Context Base Deletion 209447 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GG Context Base Substitution 790411 772.63 30.00 27.63 2.37 After
REGRESSION.HCC1395_tumor.L003 GGA Context Base Insertion 213714 22.99 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 GGA Context Base Deletion 213714 14.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GGC Context Base Insertion 196981 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GGC Context Base Deletion 196981 9.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GGG Context Base Insertion 218744 14.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GGG Context Base Deletion 218744 33.87 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 GGT Context Base Insertion 158324 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GGT Context Base Deletion 158324 5.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GT Context Base Substitution 588011 1072.05 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L003 GTA Context Base Insertion 101708 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTA Context Base Deletion 101708 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTC Context Base Insertion 126274 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTC Context Base Deletion 126274 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTG Context Base Insertion 198920 12.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTG Context Base Deletion 198920 34.02 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L003 GTT Context Base Insertion 148567 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTT Context Base Deletion 148567 14.64 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 TA Context Base Substitution 483554 1177.89 26.00 25.01 0.99 After
REGRESSION.HCC1395_tumor.L003 TAA Context Base Insertion 149452 9.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAA Context Base Deletion 149452 14.39 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 TAC Context Base Insertion 93808 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAC Context Base Deletion 93808 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAG Context Base Insertion 96871 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAG Context Base Deletion 96871 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAT Context Base Insertion 127891 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAT Context Base Deletion 127891 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TC Context Base Substitution 645667 1618.44 26.00 26.08 -0.08 After
REGRESSION.HCC1395_tumor.L003 TCA Context Base Insertion 194416 6.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCA Context Base Deletion 194416 13.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCC Context Base Insertion 201084 32.38 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 TCC Context Base Deletion 201084 11.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCG Context Base Insertion 26395 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCG Context Base Deletion 26395 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCT Context Base Insertion 222978 5.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCT Context Base Deletion 222978 12.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TG Context Base Substitution 840148 365.69 33.00 29.35 3.65 After
REGRESSION.HCC1395_tumor.L003 TGA Context Base Insertion 202185 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGA Context Base Deletion 202185 6.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGC Context Base Insertion 188532 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGC Context Base Deletion 188532 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGG Context Base Insertion 239925 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGG Context Base Deletion 239925 8.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGT Context Base Insertion 209491 13.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGT Context Base Deletion 209491 36.84 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L003 TT Context Base Substitution 839713 921.15 30.00 28.18 1.82 After
REGRESSION.HCC1395_tumor.L003 TTA Context Base Insertion 147288 5.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTA Context Base Deletion 147288 7.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTC Context Base Insertion 193404 6.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTC Context Base Deletion 193404 11.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTG Context Base Insertion 170028 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTG Context Base Deletion 170028 8.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTT Context Base Insertion 294229 62.75 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L003 TTT Context Base Deletion 294229 166.00 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L003 -1 Cycle Base Substitution 38382 137.75 24.00 24.13 -0.13 After
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Substitution 38641 50.24 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Insertion 38641 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Deletion 38641 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Substitution 36302 90.84 26.00 26.02 -0.02 After
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Insertion 36003 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Deletion 36003 5.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Substitution 36277 96.97 26.00 25.61 0.39 After
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Insertion 35971 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Deletion 35971 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Substitution 36110 78.77 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Insertion 35811 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Deletion 35811 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Substitution 36087 68.28 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Insertion 35781 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Deletion 35781 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Substitution 35959 73.00 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Insertion 35659 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Deletion 35659 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Substitution 35836 91.70 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Insertion 35516 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Deletion 35516 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Substitution 35788 92.67 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Insertion 35470 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Deletion 35470 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Substitution 35762 79.65 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Insertion 35447 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Deletion 35447 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Substitution 35694 79.69 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Insertion 35364 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Deletion 35364 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Substitution 35664 86.40 26.00 25.72 0.28 After
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Insertion 35336 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Deletion 35336 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Substitution 38739 40.73 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Insertion 38739 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Deletion 38739 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Substitution 35554 95.04 26.00 25.63 0.37 After
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Insertion 35228 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Deletion 35228 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Substitution 35393 89.10 26.00 25.73 0.27 After
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Insertion 35069 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Deletion 35069 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Substitution 35343 76.40 27.00 26.21 0.79 After
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Insertion 35019 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Deletion 35019 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Substitution 35305 82.05 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Insertion 34975 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Deletion 34975 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Substitution 35200 88.36 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Insertion 34874 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Deletion 34874 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Substitution 34992 87.12 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Insertion 34639 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Deletion 34639 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Substitution 35043 84.68 26.00 25.56 0.44 After
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Insertion 34701 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Deletion 34701 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Substitution 34776 96.47 26.00 26.13 -0.13 After
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Insertion 34429 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Deletion 34429 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Substitution 34706 77.21 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Insertion 34347 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Deletion 34347 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Substitution 34654 87.10 26.00 26.50 -0.50 After
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Insertion 34304 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Deletion 34304 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Substitution 38828 61.86 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Insertion 38828 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Deletion 38828 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Substitution 34673 79.88 26.00 26.29 -0.29 After
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Insertion 34330 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Deletion 34330 4.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Substitution 34630 79.63 26.00 26.12 -0.12 After
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Insertion 34265 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Deletion 34265 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Substitution 34531 98.03 26.00 26.23 -0.23 After
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Insertion 34168 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Deletion 34168 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Substitution 34284 67.31 27.00 25.99 1.01 After
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Insertion 33912 0.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Deletion 33912 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Substitution 34154 81.20 26.00 25.99 0.01 After
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Insertion 33773 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Deletion 33773 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Substitution 34295 79.06 26.00 26.03 -0.03 After
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Insertion 33901 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Deletion 33901 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Substitution 34183 71.53 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Insertion 33780 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Deletion 33780 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Substitution 34085 54.31 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Insertion 33687 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Deletion 33687 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Substitution 33940 89.36 26.00 25.54 0.46 After
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Insertion 33548 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Deletion 33548 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Substitution 33848 87.70 26.00 26.02 -0.02 After
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Insertion 33450 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Deletion 33450 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Substitution 38795 44.66 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Insertion 38795 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Deletion 38795 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Substitution 33820 74.27 27.00 26.16 0.84 After
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Insertion 33427 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Deletion 33427 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Substitution 33589 74.23 26.00 25.92 0.08 After
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Insertion 33209 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Deletion 33209 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Substitution 33671 71.26 27.00 26.18 0.82 After
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Insertion 33251 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Deletion 33251 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Substitution 33502 94.71 26.00 26.04 -0.04 After
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Insertion 33066 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Deletion 33066 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Substitution 33336 69.57 27.00 26.21 0.79 After
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Insertion 32899 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Deletion 32899 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Substitution 33252 87.16 26.00 25.63 0.37 After
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Insertion 32820 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Deletion 32820 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Substitution 33223 73.87 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Insertion 32759 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Deletion 32759 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Substitution 33087 93.51 25.00 25.60 -0.60 After
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Insertion 32626 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Deletion 32626 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Substitution 32974 70.70 27.00 26.15 0.85 After
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Insertion 32489 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Deletion 32489 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Substitution 32779 61.64 27.00 26.25 0.75 After
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Insertion 32269 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Deletion 32269 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Substitution 38752 47.69 28.00 27.73 0.27 After
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Insertion 38752 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Deletion 38752 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Substitution 32703 67.77 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Insertion 32204 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Deletion 32204 2.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Substitution 32567 68.20 27.00 26.16 0.84 After
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Insertion 32020 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Deletion 32020 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Substitution 32486 53.85 27.00 26.28 0.72 After
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Insertion 31889 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Deletion 31889 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Substitution 32471 60.70 27.00 26.26 0.74 After
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Insertion 31816 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Deletion 31816 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Substitution 32188 51.03 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Insertion 31465 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Deletion 31465 0.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Substitution 32006 45.63 28.00 26.24 1.76 After
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Insertion 24790 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Deletion 24790 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Substitution 31874 28.13 28.00 26.07 1.93 After
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Insertion 24722 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Deletion 24722 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -147 Cycle Base Substitution 31686 16.77 26.00 22.36 3.64 After
REGRESSION.HCC1395_tumor.L003 -148 Cycle Base Substitution 31474 29.90 23.00 15.12 7.88 After
REGRESSION.HCC1395_tumor.L003 -149 Cycle Base Substitution 19653 26.57 21.00 14.16 6.84 After
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Substitution 38836 58.96 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Insertion 38836 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Deletion 38836 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -150 Cycle Base Substitution 6919 18.78 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Substitution 38738 56.01 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Insertion 38738 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Deletion 38738 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Substitution 38876 57.48 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Insertion 38876 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Deletion 38876 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Substitution 38742 65.63 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Insertion 38742 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Deletion 38742 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Substitution 38694 64.44 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Insertion 38694 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Deletion 38694 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -2 Cycle Base Substitution 38976 129.54 25.00 25.59 -0.59 After
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Substitution 38771 62.92 28.00 27.58 0.42 After
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Insertion 38770 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Deletion 38770 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Substitution 38674 43.91 29.00 27.76 1.24 After
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Insertion 38674 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Deletion 38674 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Substitution 38689 56.56 28.00 27.73 0.27 After
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Insertion 38689 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Deletion 38689 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Substitution 38791 43.55 29.00 27.63 1.37 After
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Insertion 38791 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Deletion 38791 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Substitution 38796 49.73 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Insertion 38796 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Deletion 38796 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Substitution 38719 46.64 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Insertion 38719 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Deletion 38719 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Substitution 38597 60.84 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Insertion 38597 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Deletion 38597 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Substitution 38599 49.61 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Insertion 38596 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Deletion 38596 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Substitution 38591 81.75 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Insertion 38589 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Deletion 38589 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Substitution 38570 63.18 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Insertion 38566 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Deletion 38566 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -3 Cycle Base Substitution 38934 134.46 25.00 26.47 -1.47 After
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Substitution 38569 58.61 28.00 26.60 1.40 After
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Insertion 38562 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Deletion 38562 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Substitution 38634 64.92 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Insertion 38628 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Deletion 38628 5.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Substitution 38678 52.69 28.00 26.53 1.47 After
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Insertion 38670 0.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Deletion 38670 5.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Substitution 38553 50.16 28.00 26.92 1.08 After
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Insertion 38546 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Deletion 38546 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Substitution 38470 45.14 28.00 26.72 1.28 After
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Insertion 38468 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Deletion 38468 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Substitution 38569 53.05 28.00 27.00 1.00 After
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Insertion 38566 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Deletion 38566 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Substitution 38568 57.31 28.00 26.62 1.38 After
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Insertion 38565 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Deletion 38565 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Substitution 38393 66.50 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Insertion 38391 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Deletion 38391 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Substitution 38569 62.32 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Insertion 38567 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Deletion 38567 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Substitution 38496 53.91 28.00 26.60 1.40 After
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Insertion 38492 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Deletion 38492 4.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -4 Cycle Base Substitution 38803 84.13 27.00 26.18 0.82 After
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Substitution 38562 68.36 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Insertion 38559 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Deletion 38559 5.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Substitution 38369 59.51 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Insertion 38366 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Deletion 38366 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Substitution 38281 36.59 29.00 27.57 1.43 After
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Insertion 38276 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Deletion 38276 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Substitution 38499 58.84 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Insertion 38494 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Deletion 38494 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Substitution 38444 49.24 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Insertion 38440 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Deletion 38440 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Substitution 38564 53.83 28.00 26.83 1.17 After
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Insertion 38558 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Deletion 38558 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Substitution 38358 41.05 28.00 26.87 1.13 After
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Insertion 38353 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Deletion 38353 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Substitution 38420 68.44 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Insertion 38414 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Deletion 38414 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Substitution 38427 49.77 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Insertion 38418 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Deletion 38418 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Substitution 38368 57.61 28.00 26.82 1.18 After
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Insertion 38354 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Deletion 38354 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Substitution 38932 61.84 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Insertion 38932 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Deletion 38932 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Substitution 38403 62.77 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Insertion 38391 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Deletion 38391 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Substitution 38287 56.37 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Insertion 38265 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Deletion 38265 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Substitution 38299 53.01 28.00 26.76 1.24 After
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Insertion 38276 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Deletion 38276 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Substitution 38177 44.58 28.00 26.92 1.08 After
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Insertion 38151 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Deletion 38151 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Substitution 38242 68.54 27.00 27.04 -0.04 After
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Insertion 38208 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Deletion 38208 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Substitution 38301 66.00 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Insertion 38265 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Deletion 38265 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Substitution 38173 62.20 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Insertion 38134 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Deletion 38134 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Substitution 38249 52.22 28.00 26.93 1.07 After
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Insertion 38200 2.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Deletion 38200 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Substitution 38231 55.10 28.00 26.98 1.02 After
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Insertion 38178 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Deletion 38178 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Substitution 38411 66.10 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Insertion 38352 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Deletion 38352 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Substitution 38787 76.00 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Insertion 38787 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Deletion 38787 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Substitution 38263 81.11 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Insertion 38202 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Deletion 38202 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Substitution 37992 53.30 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Insertion 37930 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Deletion 37930 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Substitution 38063 59.00 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Insertion 37999 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Deletion 37999 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Substitution 38183 65.90 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Insertion 38111 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Deletion 38111 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Substitution 38217 69.92 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Insertion 38139 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Deletion 38139 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Substitution 38182 66.34 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Insertion 38088 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Deletion 38088 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Substitution 38311 72.03 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Insertion 38214 2.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Deletion 38214 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Substitution 38028 60.56 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Insertion 37938 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Deletion 37938 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Substitution 38085 66.52 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Insertion 37983 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Deletion 37983 4.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Substitution 38045 66.99 27.00 27.00 -0.00 After
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Insertion 37939 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Deletion 37939 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Substitution 38732 83.33 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Insertion 38732 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Deletion 38732 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Substitution 38107 71.52 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Insertion 37997 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Deletion 37997 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Substitution 38059 80.63 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Insertion 37926 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Deletion 37926 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Substitution 37907 69.60 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Insertion 37766 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Deletion 37766 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Substitution 37873 60.73 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Insertion 37721 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Deletion 37721 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Substitution 37932 62.85 28.00 27.00 1.00 After
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Insertion 37769 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Deletion 37769 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Substitution 37854 63.63 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Insertion 37688 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Deletion 37688 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Substitution 37819 73.87 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Insertion 37642 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Deletion 37642 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Substitution 37762 73.15 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Insertion 37586 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Deletion 37586 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Substitution 37611 87.78 26.00 26.77 -0.77 After
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Insertion 37436 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Deletion 37436 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Substitution 37624 75.87 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Insertion 37443 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Deletion 37443 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Substitution 38852 66.61 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Insertion 38852 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Deletion 38852 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Substitution 37519 67.25 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Insertion 37342 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Deletion 37342 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Substitution 37601 72.20 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Insertion 37418 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Deletion 37418 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Substitution 37466 74.03 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Insertion 37265 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Deletion 37265 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Substitution 37387 68.69 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Insertion 37170 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Deletion 37170 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Substitution 37384 72.65 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Insertion 37165 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Deletion 37165 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Substitution 37358 86.25 26.00 26.69 -0.69 After
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Insertion 37154 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Deletion 37154 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Substitution 37073 89.29 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Insertion 36861 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Deletion 36861 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Substitution 37287 76.01 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Insertion 37062 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Deletion 37062 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Substitution 37243 75.56 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Insertion 37006 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Deletion 37006 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Substitution 37090 90.61 26.00 26.44 -0.44 After
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Insertion 36845 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Deletion 36845 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Substitution 38803 53.49 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Insertion 38803 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Deletion 38803 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Substitution 37080 62.79 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Insertion 36834 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Deletion 36834 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Substitution 36928 84.23 26.00 26.65 -0.65 After
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Insertion 36675 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Deletion 36675 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Substitution 36808 77.40 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Insertion 36539 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Deletion 36539 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Substitution 36876 92.51 26.00 25.87 0.13 After
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Insertion 36618 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Deletion 36618 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Substitution 36690 70.98 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Insertion 36426 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Deletion 36426 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Substitution 36682 78.10 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Insertion 36414 4.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Deletion 36414 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Substitution 36617 96.86 26.00 26.47 -0.47 After
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Insertion 36337 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Deletion 36337 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Substitution 36471 84.26 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Insertion 36159 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Deletion 36159 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Substitution 36596 75.83 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Insertion 36288 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Deletion 36288 4.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Substitution 36350 80.22 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Insertion 36050 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Deletion 36050 4.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 1 Cycle Base Substitution 38410 90.67 26.00 25.92 0.08 After
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Substitution 38769 46.93 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Insertion 38769 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Deletion 38769 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Substitution 36310 68.77 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Insertion 36013 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Deletion 36013 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Substitution 36371 57.76 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Insertion 36079 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Deletion 36079 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Substitution 36305 62.62 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Insertion 36002 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Deletion 36002 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Substitution 36162 52.52 28.00 26.69 1.31 After
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Insertion 35855 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Deletion 35855 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Substitution 36234 60.07 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Insertion 35930 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Deletion 35930 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Substitution 36105 72.49 27.00 27.00 -0.00 After
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Insertion 35799 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Deletion 35799 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Substitution 35855 63.72 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Insertion 35535 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Deletion 35535 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Substitution 35905 76.55 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Insertion 35590 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Deletion 35590 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Substitution 35688 71.64 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Insertion 35347 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Deletion 35347 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Substitution 35791 58.34 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Insertion 35460 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Deletion 35460 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Substitution 38693 40.66 29.00 27.60 1.40 After
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Insertion 38693 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Deletion 38693 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Substitution 35551 91.00 26.00 25.88 0.12 After
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Insertion 35218 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Deletion 35218 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Substitution 35436 66.46 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Insertion 35102 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Deletion 35102 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Substitution 35331 62.35 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Insertion 35017 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Deletion 35017 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Substitution 35429 62.71 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Insertion 35113 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Deletion 35113 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Substitution 35243 61.22 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Insertion 34922 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Deletion 34922 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Substitution 35224 79.74 26.00 26.54 -0.54 After
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Insertion 34880 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Deletion 34880 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Substitution 35071 70.53 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Insertion 34733 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Deletion 34733 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Substitution 35144 76.90 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Insertion 34788 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Deletion 34788 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Substitution 34908 57.74 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Insertion 34552 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Deletion 34552 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Substitution 34865 63.69 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Insertion 34492 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Deletion 34492 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Substitution 38668 42.83 29.00 27.87 1.13 After
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Insertion 38668 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Deletion 38668 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Substitution 34744 60.97 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Insertion 34387 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Deletion 34387 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Substitution 34647 66.44 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Insertion 34283 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Deletion 34283 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Substitution 34681 65.01 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Insertion 34321 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Deletion 34321 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Substitution 34494 73.86 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Insertion 34136 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Deletion 34136 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Substitution 34373 64.75 27.00 25.88 1.12 After
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Insertion 33984 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Deletion 33984 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Substitution 34248 56.37 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Insertion 33868 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Deletion 33868 2.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Substitution 34308 67.30 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Insertion 33918 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Deletion 33918 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Substitution 34213 61.15 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Insertion 33829 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Deletion 33829 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Substitution 34035 67.58 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Insertion 33662 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Deletion 33662 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Substitution 33984 79.36 26.00 26.06 -0.06 After
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Insertion 33620 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Deletion 33620 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Substitution 38748 33.48 30.00 28.08 1.92 After
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Insertion 38748 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Deletion 38748 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Substitution 33869 66.71 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Insertion 33492 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Deletion 33492 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Substitution 33759 72.40 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Insertion 33386 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Deletion 33386 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Substitution 33798 59.68 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Insertion 33421 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Deletion 33421 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Substitution 33555 77.26 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Insertion 33147 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Deletion 33147 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Substitution 33504 79.51 26.00 25.85 0.15 After
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Insertion 33082 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Deletion 33082 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Substitution 33252 69.50 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Insertion 32822 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Deletion 32822 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Substitution 33296 71.79 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Insertion 32860 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Deletion 32860 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Substitution 33233 62.23 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Insertion 32795 0.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Deletion 32795 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Substitution 33145 78.32 26.00 26.48 -0.48 After
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Insertion 32726 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Deletion 32726 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Substitution 32995 69.23 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Insertion 32579 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Deletion 32579 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Substitution 38643 38.05 29.00 27.81 1.19 After
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Insertion 38643 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Deletion 38643 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Substitution 32902 70.64 27.00 26.07 0.93 After
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Insertion 32501 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Deletion 32501 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Substitution 32821 67.36 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Insertion 32414 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Deletion 32414 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Substitution 32700 76.89 26.00 26.71 -0.71 After
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Insertion 32240 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Deletion 32240 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Substitution 32642 78.80 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Insertion 32199 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Deletion 32199 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Substitution 32539 63.52 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Insertion 32067 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Deletion 32067 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Substitution 32347 55.73 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Insertion 31887 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Deletion 31887 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Substitution 32215 86.27 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Insertion 31781 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Deletion 31781 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 147 Cycle Base Substitution 32135 77.24 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L003 148 Cycle Base Substitution 32055 83.83 26.00 26.63 -0.63 After
REGRESSION.HCC1395_tumor.L003 149 Cycle Base Substitution 31879 90.02 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Substitution 38843 36.03 29.00 27.71 1.29 After
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Insertion 38843 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Deletion 38843 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 150 Cycle Base Substitution 31896 73.99 26.00 26.57 -0.57 After
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Substitution 38766 31.47 30.00 28.65 1.35 After
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Insertion 38766 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Deletion 38766 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Substitution 38773 27.91 30.00 28.58 1.42 After
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Insertion 38773 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Deletion 38773 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Substitution 38762 22.03 30.00 28.64 1.36 After
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Insertion 38762 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Deletion 38762 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Substitution 38664 28.99 30.00 28.34 1.66 After
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Insertion 38664 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Deletion 38664 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 2 Cycle Base Substitution 38902 85.21 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Substitution 38651 18.80 30.00 28.62 1.38 After
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Insertion 38651 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Deletion 38651 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Substitution 38634 34.76 29.00 28.82 0.18 After
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Insertion 38634 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Deletion 38634 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Substitution 38610 28.89 30.00 28.32 1.68 After
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Insertion 38609 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Deletion 38609 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Substitution 38701 24.84 30.00 28.52 1.48 After
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Insertion 38700 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Deletion 38700 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Substitution 38579 29.76 30.00 28.50 1.50 After
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Insertion 38578 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Deletion 38578 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Substitution 38572 31.75 30.00 28.49 1.51 After
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Insertion 38571 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Deletion 38571 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Substitution 38546 43.66 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Insertion 38546 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Deletion 38546 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Substitution 38360 41.41 29.00 27.73 1.27 After
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Insertion 38358 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Deletion 38358 2.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Substitution 38446 45.88 28.00 27.74 0.26 After
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Insertion 38445 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Deletion 38445 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Substitution 38606 33.05 30.00 28.37 1.63 After
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Insertion 38601 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Deletion 38601 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 3 Cycle Base Substitution 38892 105.83 26.00 27.36 -1.36 After
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Substitution 38599 48.00 28.00 27.73 0.27 After
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Insertion 38590 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Deletion 38590 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Substitution 38592 44.54 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Insertion 38583 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Deletion 38583 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Substitution 38589 60.53 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Insertion 38579 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Deletion 38579 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Substitution 38523 36.52 29.00 28.45 0.55 After
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Insertion 38517 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Deletion 38517 4.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Substitution 38501 40.43 29.00 27.79 1.21 After
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Insertion 38497 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Deletion 38497 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Substitution 38544 38.14 29.00 27.63 1.37 After
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Insertion 38540 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Deletion 38540 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Substitution 38388 53.53 28.00 28.12 -0.12 After
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Insertion 38385 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Deletion 38385 4.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Substitution 38408 40.38 29.00 27.90 1.10 After
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Insertion 38404 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Deletion 38404 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Substitution 38429 50.01 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Insertion 38427 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Deletion 38427 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Substitution 38480 38.07 29.00 27.55 1.45 After
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Insertion 38478 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Deletion 38478 5.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 4 Cycle Base Substitution 38764 78.06 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Substitution 38385 41.91 29.00 27.90 1.10 After
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Insertion 38383 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Deletion 38383 5.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Substitution 38425 48.38 29.00 28.05 0.95 After
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Insertion 38424 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Deletion 38424 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Substitution 38366 35.81 29.00 28.18 0.82 After
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Insertion 38365 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Deletion 38365 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Substitution 38488 44.39 29.00 28.14 0.86 After
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Insertion 38486 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Deletion 38486 4.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Substitution 38482 42.89 29.00 28.04 0.96 After
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Insertion 38479 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Deletion 38479 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Substitution 38409 33.96 29.00 28.03 0.97 After
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Insertion 38401 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Deletion 38401 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Substitution 38419 31.64 30.00 28.33 1.67 After
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Insertion 38410 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Deletion 38410 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Substitution 38429 44.14 29.00 27.64 1.36 After
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Insertion 38419 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Deletion 38419 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Substitution 38407 50.64 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Insertion 38395 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Deletion 38395 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Substitution 38424 37.22 29.00 27.94 1.06 After
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Insertion 38412 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Deletion 38412 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Substitution 38866 54.09 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Insertion 38866 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Deletion 38866 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Substitution 38344 43.33 29.00 27.66 1.34 After
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Insertion 38330 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Deletion 38330 5.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Substitution 38271 53.49 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Insertion 38253 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Deletion 38253 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Substitution 38500 48.42 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Insertion 38480 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Deletion 38480 5.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Substitution 38306 45.09 28.00 27.76 0.24 After
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Insertion 38279 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Deletion 38279 5.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Substitution 38279 39.34 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Insertion 38245 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Deletion 38245 5.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Substitution 38329 40.39 29.00 27.75 1.25 After
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Insertion 38295 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Deletion 38295 5.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Substitution 38296 56.14 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Insertion 38257 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Deletion 38257 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Substitution 38295 54.97 28.00 27.41 0.59 After
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Insertion 38237 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Deletion 38237 4.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Substitution 38182 45.10 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Insertion 38116 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Deletion 38116 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Substitution 38165 43.77 29.00 27.59 1.41 After
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Insertion 38097 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Deletion 38097 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Substitution 38727 51.64 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Insertion 38727 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Deletion 38727 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Substitution 38186 44.08 29.00 27.66 1.34 After
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Insertion 38121 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Deletion 38121 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Substitution 38119 48.97 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Insertion 38056 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Deletion 38056 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Substitution 38148 53.49 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Insertion 38085 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Deletion 38085 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Substitution 38188 43.25 29.00 27.68 1.32 After
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Insertion 38125 2.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Deletion 38125 4.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Substitution 38120 48.02 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Insertion 38037 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Deletion 38037 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Substitution 38188 45.45 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Insertion 38100 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Deletion 38100 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Substitution 38112 43.18 29.00 27.62 1.38 After
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Insertion 38017 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Deletion 38017 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Substitution 38145 41.72 29.00 27.96 1.04 After
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Insertion 38048 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Deletion 38048 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Substitution 37935 52.48 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Insertion 37835 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Deletion 37835 4.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Substitution 37907 58.14 28.00 27.42 0.58 After
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Insertion 37804 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Deletion 37804 6.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Substitution 38753 49.04 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Insertion 38753 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Deletion 38753 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Substitution 37987 64.48 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Insertion 37878 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Deletion 37878 5.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Substitution 38003 39.39 29.00 27.37 1.63 After
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Insertion 37878 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Deletion 37878 5.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Substitution 37943 54.20 28.00 27.33 0.67 After
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Insertion 37810 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Deletion 37810 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Substitution 37835 60.62 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Insertion 37688 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Deletion 37688 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Substitution 37848 48.00 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Insertion 37687 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Deletion 37687 6.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Substitution 37836 63.27 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Insertion 37672 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Deletion 37672 4.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Substitution 37783 57.68 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Insertion 37610 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Deletion 37610 4.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Substitution 37675 64.80 28.00 27.32 0.68 After
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Insertion 37499 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Deletion 37499 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Substitution 37649 57.50 28.00 27.30 0.70 After
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Insertion 37476 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Deletion 37476 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Substitution 37558 57.31 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Insertion 37378 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Deletion 37378 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Substitution 38835 44.43 29.00 27.43 1.57 After
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Insertion 38835 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Deletion 38835 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Substitution 37537 57.12 28.00 27.10 0.90 After
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Insertion 37358 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Deletion 37358 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Substitution 37529 51.11 28.00 27.06 0.94 After
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Insertion 37349 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Deletion 37349 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Substitution 37442 64.07 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Insertion 37262 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Deletion 37262 4.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Substitution 37394 60.46 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Insertion 37183 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Deletion 37183 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Substitution 37426 55.62 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Insertion 37219 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Deletion 37219 3.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Substitution 37346 62.65 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Insertion 37131 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Deletion 37131 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Substitution 37295 67.65 27.00 27.32 -0.32 After
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Insertion 37083 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Deletion 37083 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Substitution 37112 56.00 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Insertion 36894 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Deletion 36894 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Substitution 37191 55.70 28.00 27.15 0.85 After
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Insertion 36960 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Deletion 36960 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Substitution 37154 57.87 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Insertion 36918 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Deletion 36918 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Substitution 38845 43.40 29.00 27.66 1.34 After
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Insertion 38845 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Deletion 38845 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Substitution 37089 56.00 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Insertion 36852 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Deletion 36852 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Substitution 36911 55.88 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Insertion 36659 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Deletion 36659 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Substitution 36848 63.01 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Insertion 36587 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Deletion 36587 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Substitution 36868 63.63 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Insertion 36603 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Deletion 36603 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Substitution 36797 74.12 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Insertion 36518 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Deletion 36518 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Substitution 36778 59.49 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Insertion 36498 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Deletion 36498 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Substitution 36681 62.66 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Insertion 36402 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Deletion 36402 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Substitution 36641 66.87 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Insertion 36342 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Deletion 36342 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Substitution 36532 70.06 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Insertion 36236 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Deletion 36236 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Substitution 36351 67.82 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Insertion 36065 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Deletion 36065 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 10 QualityScore Base Substitution 14154 1499.70 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L003 11 QualityScore Base Substitution 13819 1046.67 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L003 12 QualityScore Base Substitution 22096 1265.39 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L003 13 QualityScore Base Substitution 6726 76.29 17.00 13.00 4.00 After
REGRESSION.HCC1395_tumor.L003 14 QualityScore Base Substitution 24896 327.60 18.00 14.00 4.00 After
REGRESSION.HCC1395_tumor.L003 15 QualityScore Base Substitution 17604 9.10 22.00 15.00 7.00 After
REGRESSION.HCC1395_tumor.L003 16 QualityScore Base Substitution 14390 1.93 22.00 16.00 6.00 After
REGRESSION.HCC1395_tumor.L003 22 QualityScore Base Substitution 8053 2.08 24.00 22.00 2.00 After
REGRESSION.HCC1395_tumor.L003 23 QualityScore Base Substitution 109879 673.79 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 24 QualityScore Base Substitution 97758 386.35 24.00 24.00 0.00 After
REGRESSION.HCC1395_tumor.L003 25 QualityScore Base Substitution 125211 236.12 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L003 28 QualityScore Base Substitution 7790 2.44 28.00 28.00 0.00 After
REGRESSION.HCC1395_tumor.L003 29 QualityScore Base Substitution 58084 97.26 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 30 QualityScore Base Substitution 2492060 1496.05 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L003 31 QualityScore Base Substitution 2859735 1269.27 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L003 32 QualityScore Base Substitution 4660782 1093.66 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L003 33 QualityScore Base Substitution 400024 55.19 36.00 33.00 3.00 After
REGRESSION.HCC1395_tumor.L003 45 QualityScore Base Insertion 11000515 501.11 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 45 QualityScore Base Deletion 11000515 1002.56 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L003 8 QualityScore Base Substitution 4584 837.73 7.00 8.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 9 QualityScore Base Substitution 62870 8355.47 9.00 9.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AA Context Base Substitution 835630 1815.91 27.00 25.50 1.50 After
REGRESSION.HCC1395_tumor.L004 AAA Context Base Insertion 297690 58.58 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 AAA Context Base Deletion 297690 212.15 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L004 AAC Context Base Insertion 132645 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AAC Context Base Deletion 132645 7.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AAG Context Base Insertion 197770 7.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AAG Context Base Deletion 197770 8.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AAT Context Base Insertion 174136 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AAT Context Base Deletion 174136 12.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AC Context Base Substitution 530214 1873.51 25.00 24.76 0.24 After
REGRESSION.HCC1395_tumor.L004 ACA Context Base Insertion 204085 18.96 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 ACA Context Base Deletion 204085 40.28 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 ACC Context Base Insertion 146004 7.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ACC Context Base Deletion 146004 6.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ACG Context Base Insertion 30444 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ACG Context Base Deletion 30444 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ACT Context Base Insertion 158368 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ACT Context Base Deletion 158368 15.24 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 AG Context Base Substitution 797101 606.74 31.00 28.75 2.25 After
REGRESSION.HCC1395_tumor.L004 AGA Context Base Insertion 221341 5.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGA Context Base Deletion 221341 11.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGC Context Base Insertion 190941 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGC Context Base Deletion 190941 5.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGG Context Base Insertion 225895 14.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGG Context Base Deletion 225895 7.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGT Context Base Insertion 154922 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGT Context Base Deletion 154922 5.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AT Context Base Substitution 601377 641.18 30.00 27.65 2.35 After
REGRESSION.HCC1395_tumor.L004 ATA Context Base Insertion 134757 8.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATA Context Base Deletion 134757 5.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATC Context Base Insertion 120917 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATC Context Base Deletion 120917 5.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATG Context Base Insertion 173871 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATG Context Base Deletion 173871 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATT Context Base Insertion 182114 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATT Context Base Deletion 182114 7.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CA Context Base Substitution 852688 1787.78 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L004 CAA Context Base Insertion 171940 6.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CAA Context Base Deletion 171940 11.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CAC Context Base Insertion 182812 21.67 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 CAC Context Base Deletion 182812 39.32 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 CAG Context Base Insertion 290431 9.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CAG Context Base Deletion 290431 11.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CAT Context Base Insertion 169504 7.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CAT Context Base Deletion 169504 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CC Context Base Substitution 759676 2407.13 25.00 24.69 0.31 After
REGRESSION.HCC1395_tumor.L004 CCA Context Base Insertion 243339 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CCA Context Base Deletion 243339 8.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CCC Context Base Insertion 210468 16.46 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 CCC Context Base Deletion 210468 18.25 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 CCG Context Base Insertion 53550 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CCG Context Base Deletion 53550 7.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CCT Context Base Insertion 242078 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CCT Context Base Deletion 242078 12.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CG Context Base Substitution 159892 504.12 25.00 25.53 -0.53 After
REGRESSION.HCC1395_tumor.L004 CGA Context Base Insertion 55665 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGA Context Base Deletion 55665 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGC Context Base Insertion 79656 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGC Context Base Deletion 79656 6.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGG Context Base Insertion 96983 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGG Context Base Deletion 96983 8.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGT Context Base Insertion 62461 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGT Context Base Deletion 62461 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CT Context Base Substitution 836906 407.40 33.00 29.40 3.60 After
REGRESSION.HCC1395_tumor.L004 CTA Context Base Insertion 96579 0.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTA Context Base Deletion 96579 8.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTC Context Base Insertion 200945 6.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTC Context Base Deletion 200945 19.70 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 CTG Context Base Insertion 292660 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTG Context Base Deletion 292660 13.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTT Context Base Insertion 209162 6.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTT Context Base Deletion 209162 9.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GA Context Base Substitution 700242 997.47 28.00 26.99 1.01 After
REGRESSION.HCC1395_tumor.L004 GAA Context Base Insertion 208455 6.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAA Context Base Deletion 208455 9.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAC Context Base Insertion 118023 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAC Context Base Deletion 118023 7.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAG Context Base Insertion 206900 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAG Context Base Deletion 206900 11.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAT Context Base Insertion 124686 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAT Context Base Deletion 124686 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GC Context Base Substitution 658158 1458.12 27.00 26.02 0.98 After
REGRESSION.HCC1395_tumor.L004 GCA Context Base Insertion 203520 8.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCA Context Base Deletion 203520 5.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCC Context Base Insertion 197882 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCC Context Base Deletion 197882 10.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCG Context Base Insertion 48765 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCG Context Base Deletion 48765 4.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCT Context Base Insertion 207794 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCT Context Base Deletion 207794 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GG Context Base Substitution 785379 747.10 30.00 27.76 2.24 After
REGRESSION.HCC1395_tumor.L004 GGA Context Base Insertion 213689 15.81 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 GGA Context Base Deletion 213689 13.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GGC Context Base Insertion 195091 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GGC Context Base Deletion 195091 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GGG Context Base Insertion 217103 12.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GGG Context Base Deletion 217103 30.10 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 GGT Context Base Insertion 157078 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GGT Context Base Deletion 157078 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GT Context Base Substitution 588344 1053.44 27.00 27.00 -0.00 After
REGRESSION.HCC1395_tumor.L004 GTA Context Base Insertion 101343 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GTA Context Base Deletion 101343 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GTC Context Base Insertion 126499 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GTC Context Base Deletion 126499 5.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GTG Context Base Insertion 199006 15.51 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 GTG Context Base Deletion 199006 35.94 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 GTT Context Base Insertion 149272 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GTT Context Base Deletion 149272 13.25 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 TA Context Base Substitution 483865 1132.34 26.00 25.56 0.44 After
REGRESSION.HCC1395_tumor.L004 TAA Context Base Insertion 150347 10.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAA Context Base Deletion 150347 15.62 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 TAC Context Base Insertion 93406 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAC Context Base Deletion 93406 5.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAG Context Base Insertion 95785 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAG Context Base Deletion 95785 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAT Context Base Insertion 128821 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAT Context Base Deletion 128821 4.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TC Context Base Substitution 645390 1632.58 26.00 25.60 0.40 After
REGRESSION.HCC1395_tumor.L004 TCA Context Base Insertion 195144 5.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TCA Context Base Deletion 195144 15.23 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 TCC Context Base Insertion 200299 36.22 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 TCC Context Base Deletion 200299 9.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TCG Context Base Insertion 25987 0.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TCG Context Base Deletion 25987 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TCT Context Base Insertion 222943 6.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TCT Context Base Deletion 222943 15.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TG Context Base Substitution 841752 349.23 33.00 29.45 3.55 After
REGRESSION.HCC1395_tumor.L004 TGA Context Base Insertion 204154 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGA Context Base Deletion 204154 4.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGC Context Base Insertion 188351 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGC Context Base Deletion 188351 6.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGG Context Base Insertion 239513 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGG Context Base Deletion 239513 7.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGT Context Base Insertion 210096 17.07 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 TGT Context Base Deletion 210096 38.86 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 TT Context Base Substitution 841252 915.06 30.00 28.29 1.71 After
REGRESSION.HCC1395_tumor.L004 TTA Context Base Insertion 147555 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTA Context Base Deletion 147555 9.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTC Context Base Insertion 193087 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTC Context Base Deletion 193087 12.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTG Context Base Insertion 170311 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTG Context Base Deletion 170311 7.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTT Context Base Insertion 295042 58.28 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 TTT Context Base Deletion 295042 170.31 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L004 -1 Cycle Base Substitution 38400 154.19 24.00 23.44 0.56 After
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Substitution 38700 43.82 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Insertion 38700 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Deletion 38700 2.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Substitution 36327 77.24 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Insertion 36049 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Deletion 36049 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Substitution 36237 75.47 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Insertion 35937 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Deletion 35937 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Substitution 36346 83.04 26.00 26.89 -0.89 After
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Insertion 36024 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Deletion 36024 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Substitution 36293 67.25 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Insertion 35944 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Deletion 35944 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Substitution 36068 93.86 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Insertion 35729 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Deletion 35729 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Substitution 36047 86.07 26.00 26.58 -0.58 After
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Insertion 35730 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Deletion 35730 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Substitution 35953 80.27 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Insertion 35624 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Deletion 35624 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Substitution 35697 77.94 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Insertion 35387 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Deletion 35387 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Substitution 35697 72.11 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Insertion 35384 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Deletion 35384 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Substitution 35613 84.37 26.00 26.45 -0.45 After
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Insertion 35286 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Deletion 35286 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Substitution 38633 47.59 28.00 27.61 0.39 After
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Insertion 38632 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Deletion 38632 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Substitution 35493 79.85 26.00 26.41 -0.41 After
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Insertion 35144 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Deletion 35144 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Substitution 35501 81.54 26.00 26.65 -0.65 After
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Insertion 35157 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Deletion 35157 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Substitution 35401 87.58 26.00 26.28 -0.28 After
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Insertion 35071 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Deletion 35071 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Substitution 35196 75.22 27.00 26.30 0.70 After
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Insertion 34847 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Deletion 34847 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Substitution 35262 76.58 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Insertion 34933 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Deletion 34933 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Substitution 35076 84.52 26.00 26.47 -0.47 After
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Insertion 34726 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Deletion 34726 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Substitution 35083 76.16 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Insertion 34749 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Deletion 34749 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Substitution 34835 93.43 26.00 26.41 -0.41 After
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Insertion 34499 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Deletion 34499 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Substitution 34891 82.62 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Insertion 34573 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Deletion 34573 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Substitution 34925 97.20 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Insertion 34603 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Deletion 34603 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Substitution 38731 47.71 28.00 27.74 0.26 After
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Insertion 38730 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Deletion 38730 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Substitution 34722 88.57 26.00 26.41 -0.41 After
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Insertion 34382 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Deletion 34382 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Substitution 34563 67.39 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Insertion 34212 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Deletion 34212 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Substitution 34623 92.29 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Insertion 34248 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Deletion 34248 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Substitution 34483 87.16 26.00 26.26 -0.26 After
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Insertion 34070 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Deletion 34070 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Substitution 34429 79.89 26.00 26.41 -0.41 After
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Insertion 34009 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Deletion 34009 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Substitution 34220 78.51 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Insertion 33795 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Deletion 33795 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Substitution 34172 81.70 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Insertion 33742 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Deletion 33742 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Substitution 34114 78.16 26.00 26.44 -0.44 After
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Insertion 33690 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Deletion 33690 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Substitution 33945 79.16 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Insertion 33534 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Deletion 33534 2.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Substitution 33862 89.89 26.00 26.40 -0.40 After
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Insertion 33429 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Deletion 33429 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Substitution 38700 54.55 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Insertion 38699 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Deletion 38699 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Substitution 33747 78.56 26.00 26.04 -0.04 After
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Insertion 33354 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Deletion 33354 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Substitution 33609 68.22 27.00 26.27 0.73 After
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Insertion 33207 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Deletion 33207 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Substitution 33581 67.76 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Insertion 33168 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Deletion 33168 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Substitution 33444 85.24 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Insertion 33030 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Deletion 33030 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Substitution 33409 71.45 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Insertion 32983 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Deletion 32983 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Substitution 33218 80.50 26.00 26.48 -0.48 After
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Insertion 32792 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Deletion 32792 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Substitution 33136 73.52 26.00 26.41 -0.41 After
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Insertion 32717 0.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Deletion 32717 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Substitution 33071 78.75 26.00 26.49 -0.49 After
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Insertion 32633 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Deletion 32633 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Substitution 32897 70.45 27.00 26.28 0.72 After
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Insertion 32476 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Deletion 32476 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Substitution 32836 85.36 26.00 26.01 -0.01 After
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Insertion 32375 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Deletion 32375 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Substitution 38628 55.77 28.00 27.88 0.12 After
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Insertion 38627 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Deletion 38627 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Substitution 32670 71.08 27.00 26.22 0.78 After
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Insertion 32182 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Deletion 32182 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Substitution 32577 79.58 26.00 26.41 -0.41 After
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Insertion 32045 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Deletion 32045 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Substitution 32579 67.99 27.00 26.38 0.62 After
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Insertion 31981 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Deletion 31981 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Substitution 32332 79.26 26.00 26.29 -0.29 After
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Insertion 31686 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Deletion 31686 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Substitution 32254 71.91 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Insertion 31565 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Deletion 31565 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Substitution 32211 58.05 27.00 26.22 0.78 After
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Insertion 24817 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Deletion 24817 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Substitution 32029 22.92 28.00 26.11 1.89 After
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Insertion 24770 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Deletion 24770 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -147 Cycle Base Substitution 31809 19.76 26.00 22.36 3.64 After
REGRESSION.HCC1395_tumor.L004 -148 Cycle Base Substitution 31532 26.02 24.00 16.13 7.87 After
REGRESSION.HCC1395_tumor.L004 -149 Cycle Base Substitution 19716 27.84 21.00 14.18 6.82 After
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Substitution 38726 36.05 29.00 27.89 1.11 After
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Insertion 38726 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Deletion 38726 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -150 Cycle Base Substitution 6853 23.87 25.00 25.86 -0.86 After
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Substitution 38757 55.77 28.00 27.83 0.17 After
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Insertion 38757 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Deletion 38757 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Substitution 38665 49.25 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Insertion 38665 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Deletion 38665 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Substitution 38513 53.45 28.00 27.92 0.08 After
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Insertion 38513 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Deletion 38513 5.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Substitution 38588 63.62 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Insertion 38588 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Deletion 38588 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -2 Cycle Base Substitution 38820 122.32 25.00 25.73 -0.73 After
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Substitution 38599 65.46 28.00 27.99 0.01 After
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Insertion 38599 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Deletion 38599 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Substitution 38589 45.95 28.00 27.83 0.17 After
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Insertion 38589 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Deletion 38589 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Substitution 38635 42.22 29.00 27.91 1.09 After
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Insertion 38635 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Deletion 38635 4.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Substitution 38689 59.42 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Insertion 38689 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Deletion 38689 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Substitution 38576 51.19 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Insertion 38576 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Deletion 38576 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Substitution 38523 50.05 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Insertion 38523 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Deletion 38523 4.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Substitution 38518 50.37 28.00 26.85 1.15 After
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Insertion 38518 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Deletion 38518 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Substitution 38592 53.73 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Insertion 38592 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Deletion 38592 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Substitution 38512 57.30 28.00 27.06 0.94 After
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Insertion 38510 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Deletion 38510 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Substitution 38591 61.26 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Insertion 38586 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Deletion 38586 4.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -3 Cycle Base Substitution 38904 133.12 25.00 26.18 -1.18 After
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Substitution 38626 58.07 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Insertion 38620 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Deletion 38620 5.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Substitution 38503 65.59 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Insertion 38498 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Deletion 38498 5.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Substitution 38609 44.53 28.00 27.38 0.62 After
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Insertion 38605 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Deletion 38605 5.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Substitution 38455 46.89 28.00 26.86 1.14 After
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Insertion 38452 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Deletion 38452 4.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Substitution 38460 41.53 29.00 27.06 1.94 After
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Insertion 38458 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Deletion 38458 4.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Substitution 38525 60.62 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Insertion 38521 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Deletion 38521 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Substitution 38535 57.18 28.00 26.79 1.21 After
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Insertion 38529 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Deletion 38529 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Substitution 38387 61.26 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Insertion 38381 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Deletion 38381 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Substitution 38417 58.84 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Insertion 38411 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Deletion 38411 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Substitution 38442 67.44 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Insertion 38437 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Deletion 38437 4.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -4 Cycle Base Substitution 38798 89.32 26.00 26.14 -0.14 After
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Substitution 38394 58.30 28.00 26.97 1.03 After
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Insertion 38388 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Deletion 38388 4.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Substitution 38328 67.55 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Insertion 38323 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Deletion 38323 4.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Substitution 38262 68.18 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Insertion 38259 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Deletion 38259 4.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Substitution 38295 43.97 29.00 27.36 1.64 After
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Insertion 38288 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Deletion 38288 4.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Substitution 38313 50.61 28.00 26.98 1.02 After
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Insertion 38307 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Deletion 38307 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Substitution 38341 44.25 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Insertion 38336 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Deletion 38336 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Substitution 38298 46.50 28.00 27.30 0.70 After
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Insertion 38295 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Deletion 38295 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Substitution 38275 61.70 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Insertion 38266 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Deletion 38266 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Substitution 38318 58.72 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Insertion 38308 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Deletion 38308 4.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Substitution 38355 54.83 28.00 26.83 1.17 After
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Insertion 38344 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Deletion 38344 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Substitution 38884 56.81 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Insertion 38884 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Deletion 38884 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Substitution 38298 52.56 28.00 26.99 1.01 After
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Insertion 38282 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Deletion 38282 4.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Substitution 38187 60.98 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Insertion 38176 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Deletion 38176 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Substitution 38143 53.63 28.00 26.88 1.12 After
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Insertion 38130 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Deletion 38130 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Substitution 38298 47.40 28.00 27.23 0.77 After
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Insertion 38280 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Deletion 38280 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Substitution 38208 66.40 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Insertion 38183 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Deletion 38183 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Substitution 38125 68.85 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Insertion 38090 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Deletion 38090 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Substitution 38265 64.43 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Insertion 38213 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Deletion 38213 4.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Substitution 38165 58.44 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Insertion 38104 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Deletion 38104 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Substitution 38244 60.09 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Insertion 38179 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Deletion 38179 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Substitution 38215 69.40 27.00 27.00 -0.00 After
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Insertion 38151 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Deletion 38151 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Substitution 38727 70.18 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Insertion 38727 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Deletion 38727 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Substitution 38163 50.88 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Insertion 38099 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Deletion 38099 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Substitution 38093 58.46 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Insertion 38026 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Deletion 38026 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Substitution 38194 80.23 27.00 26.38 0.62 After
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Insertion 38129 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Deletion 38129 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Substitution 38122 69.10 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Insertion 38051 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Deletion 38051 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Substitution 38151 50.12 28.00 27.34 0.66 After
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Insertion 38079 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Deletion 38079 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Substitution 38202 62.38 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Insertion 38128 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Deletion 38128 5.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Substitution 38137 63.93 28.00 27.20 0.80 After
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Insertion 38062 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Deletion 38062 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Substitution 38112 63.81 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Insertion 38008 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Deletion 38008 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Substitution 38063 73.37 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Insertion 37947 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Deletion 37947 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Substitution 38017 69.07 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Insertion 37903 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Deletion 37903 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Substitution 38556 71.26 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Insertion 38556 0.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Deletion 38556 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Substitution 37988 77.09 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Insertion 37872 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Deletion 37872 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Substitution 37970 76.28 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Insertion 37857 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Deletion 37857 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Substitution 37890 67.41 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Insertion 37763 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Deletion 37763 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Substitution 37894 66.36 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Insertion 37746 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Deletion 37746 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Substitution 37768 65.10 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Insertion 37598 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Deletion 37598 4.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Substitution 37924 62.25 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Insertion 37751 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Deletion 37751 5.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Substitution 37882 54.61 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Insertion 37723 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Deletion 37723 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Substitution 37597 64.98 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Insertion 37443 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Deletion 37443 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Substitution 37568 61.64 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Insertion 37403 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Deletion 37403 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Substitution 37645 76.33 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Insertion 37467 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Deletion 37467 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Substitution 38677 67.79 27.00 27.16 -0.16 After
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Insertion 38677 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Deletion 38677 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Substitution 37505 67.97 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Insertion 37332 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Deletion 37332 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Substitution 37579 68.55 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Insertion 37387 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Deletion 37387 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Substitution 37358 74.74 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Insertion 37155 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Deletion 37155 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Substitution 37415 63.62 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Insertion 37223 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Deletion 37223 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Substitution 37373 78.22 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Insertion 37160 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Deletion 37160 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Substitution 37395 79.87 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Insertion 37167 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Deletion 37167 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Substitution 37341 74.54 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Insertion 37108 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Deletion 37108 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Substitution 37202 57.71 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Insertion 36956 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Deletion 36956 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Substitution 37199 78.84 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Insertion 36950 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Deletion 36950 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Substitution 37163 77.39 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Insertion 36913 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Deletion 36913 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Substitution 38787 55.52 28.00 27.52 0.48 After
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Insertion 38787 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Deletion 38787 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Substitution 37047 69.40 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Insertion 36789 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Deletion 36789 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Substitution 36972 67.09 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Insertion 36731 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Deletion 36731 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Substitution 36814 84.68 26.00 26.87 -0.87 After
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Insertion 36584 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Deletion 36584 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Substitution 36871 72.75 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Insertion 36632 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Deletion 36632 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Substitution 36831 87.12 26.00 26.02 -0.02 After
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Insertion 36593 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Deletion 36593 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Substitution 36775 84.08 26.00 26.50 -0.50 After
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Insertion 36499 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Deletion 36499 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Substitution 36702 82.29 26.00 26.58 -0.58 After
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Insertion 36414 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Deletion 36414 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Substitution 36545 88.29 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Insertion 36262 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Deletion 36262 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Substitution 36427 86.50 26.00 26.57 -0.57 After
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Insertion 36132 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Deletion 36132 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Substitution 36496 76.38 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Insertion 36219 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Deletion 36219 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 1 Cycle Base Substitution 38400 69.44 27.00 26.15 0.85 After
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Substitution 38783 47.12 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Insertion 38783 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Deletion 38783 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Substitution 36466 65.27 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Insertion 36187 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Deletion 36187 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Substitution 36335 67.43 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Insertion 36031 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Deletion 36031 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Substitution 36133 54.62 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Insertion 35809 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Deletion 35809 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Substitution 36133 51.16 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Insertion 35803 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Deletion 35803 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Substitution 36172 64.24 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Insertion 35845 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Deletion 35845 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Substitution 35964 64.12 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Insertion 35652 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Deletion 35652 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Substitution 35892 77.03 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Insertion 35588 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Deletion 35588 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Substitution 35843 74.15 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Insertion 35521 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Deletion 35521 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Substitution 35662 90.32 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Insertion 35338 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Deletion 35338 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Substitution 35711 65.84 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Insertion 35386 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Deletion 35386 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Substitution 38826 36.54 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Insertion 38826 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Deletion 38826 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Substitution 35583 71.30 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Insertion 35232 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Deletion 35232 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Substitution 35439 65.27 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Insertion 35103 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Deletion 35103 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Substitution 35343 55.89 28.00 27.00 1.00 After
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Insertion 35012 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Deletion 35012 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Substitution 35335 54.99 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Insertion 34977 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Deletion 34977 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Substitution 35300 57.95 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Insertion 34959 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Deletion 34959 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Substitution 35156 71.28 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Insertion 34819 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Deletion 34819 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Substitution 35101 72.35 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Insertion 34773 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Deletion 34773 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Substitution 34975 75.05 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Insertion 34644 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Deletion 34644 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Substitution 34906 59.17 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Insertion 34587 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Deletion 34587 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Substitution 34812 89.06 26.00 26.72 -0.72 After
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Insertion 34496 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Deletion 34496 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Substitution 38645 37.39 29.00 28.21 0.79 After
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Insertion 38645 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Deletion 38645 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Substitution 34798 60.28 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Insertion 34457 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Deletion 34457 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Substitution 34574 62.73 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Insertion 34221 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Deletion 34221 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Substitution 34459 79.24 26.00 26.09 -0.09 After
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Insertion 34079 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Deletion 34079 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Substitution 34454 84.35 26.00 26.79 -0.79 After
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Insertion 34059 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Deletion 34059 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Substitution 34500 68.82 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Insertion 34085 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Deletion 34085 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Substitution 34380 75.23 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Insertion 33966 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Deletion 33966 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Substitution 34283 77.28 26.00 26.07 -0.07 After
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Insertion 33876 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Deletion 33876 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Substitution 34207 69.10 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Insertion 33810 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Deletion 33810 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Substitution 34080 58.53 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Insertion 33674 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Deletion 33674 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Substitution 33933 70.14 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Insertion 33538 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Deletion 33538 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Substitution 38676 55.06 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Insertion 38676 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Deletion 38676 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Substitution 33882 68.36 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Insertion 33480 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Deletion 33480 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Substitution 33629 67.14 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Insertion 33226 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Deletion 33226 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Substitution 33541 54.89 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Insertion 33134 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Deletion 33134 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Substitution 33475 65.54 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Insertion 33071 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Deletion 33071 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Substitution 33470 67.52 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Insertion 33048 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Deletion 33048 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Substitution 33315 76.61 26.00 26.61 -0.61 After
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Insertion 32903 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Deletion 32903 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Substitution 33288 60.12 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Insertion 32870 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Deletion 32870 2.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Substitution 33255 59.01 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Insertion 32842 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Deletion 32842 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Substitution 33048 66.42 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Insertion 32647 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Deletion 32647 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Substitution 33016 76.90 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Insertion 32607 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Deletion 32607 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Substitution 38725 51.81 28.00 27.93 0.07 After
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Insertion 38725 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Deletion 38725 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Substitution 32914 74.20 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Insertion 32505 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Deletion 32505 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Substitution 32785 72.06 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Insertion 32365 0.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Deletion 32365 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Substitution 32652 64.97 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Insertion 32182 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Deletion 32182 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Substitution 32559 64.45 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Insertion 32118 0.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Deletion 32118 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Substitution 32510 59.75 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Insertion 32068 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Deletion 32068 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Substitution 32380 56.76 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Insertion 31945 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Deletion 31945 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Substitution 32198 73.89 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Insertion 31801 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Deletion 31801 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 147 Cycle Base Substitution 32223 69.61 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L004 148 Cycle Base Substitution 31966 100.59 25.00 26.43 -1.43 After
REGRESSION.HCC1395_tumor.L004 149 Cycle Base Substitution 31962 78.68 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Substitution 38716 42.37 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Insertion 38716 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Deletion 38716 2.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 150 Cycle Base Substitution 31856 85.13 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Substitution 38815 37.00 29.00 28.89 0.11 After
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Insertion 38815 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Deletion 38815 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Substitution 38670 25.73 30.00 28.64 1.36 After
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Insertion 38670 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Deletion 38670 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Substitution 38751 21.11 30.00 28.84 1.16 After
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Insertion 38751 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Deletion 38751 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Substitution 38711 29.84 30.00 28.67 1.33 After
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Insertion 38711 2.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Deletion 38711 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 2 Cycle Base Substitution 38967 86.39 27.00 27.28 -0.28 After
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Substitution 38696 30.54 30.00 28.77 1.23 After
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Insertion 38696 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Deletion 38696 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Substitution 38684 37.40 29.00 28.63 0.37 After
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Insertion 38684 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Deletion 38684 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Substitution 38701 29.47 30.00 28.99 1.01 After
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Insertion 38701 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Deletion 38701 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Substitution 38675 33.52 29.00 28.76 0.24 After
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Insertion 38675 4.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Deletion 38675 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Substitution 38700 35.68 29.00 28.82 0.18 After
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Insertion 38700 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Deletion 38700 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Substitution 38580 26.90 30.00 28.82 1.18 After
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Insertion 38580 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Deletion 38580 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Substitution 38674 38.65 29.00 27.90 1.10 After
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Insertion 38673 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Deletion 38673 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Substitution 38625 39.95 29.00 27.75 1.25 After
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Insertion 38623 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Deletion 38623 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Substitution 38583 38.01 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Insertion 38581 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Deletion 38581 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Substitution 38597 30.53 30.00 28.31 1.69 After
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Insertion 38596 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Deletion 38596 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 3 Cycle Base Substitution 38846 103.41 26.00 27.32 -1.32 After
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Substitution 38466 45.48 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Insertion 38462 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Deletion 38462 5.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Substitution 38568 41.48 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Insertion 38564 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Deletion 38564 5.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Substitution 38658 56.73 28.00 27.88 0.12 After
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Insertion 38653 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Deletion 38653 4.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Substitution 38463 34.80 29.00 27.81 1.19 After
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Insertion 38458 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Deletion 38458 5.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Substitution 38499 36.54 29.00 27.93 1.07 After
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Insertion 38497 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Deletion 38497 4.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Substitution 38348 36.83 29.00 27.93 1.07 After
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Insertion 38345 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Deletion 38345 4.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Substitution 38490 50.22 29.00 28.05 0.95 After
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Insertion 38488 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Deletion 38488 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Substitution 38541 40.19 29.00 27.84 1.16 After
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Insertion 38536 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Deletion 38536 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Substitution 38500 49.03 28.00 27.95 0.05 After
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Insertion 38496 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Deletion 38496 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Substitution 38445 40.29 29.00 27.82 1.18 After
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Insertion 38439 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Deletion 38439 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 4 Cycle Base Substitution 38753 61.95 28.00 27.30 0.70 After
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Substitution 38453 43.67 29.00 27.87 1.13 After
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Insertion 38446 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Deletion 38446 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Substitution 38464 47.18 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Insertion 38458 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Deletion 38458 5.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Substitution 38328 22.95 30.00 28.37 1.63 After
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Insertion 38321 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Deletion 38321 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Substitution 38484 50.95 28.00 27.86 0.14 After
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Insertion 38479 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Deletion 38479 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Substitution 38422 39.92 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Insertion 38417 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Deletion 38417 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Substitution 38253 54.86 28.00 27.90 0.10 After
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Insertion 38246 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Deletion 38246 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Substitution 38467 38.93 29.00 27.87 1.13 After
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Insertion 38457 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Deletion 38457 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Substitution 38325 44.20 29.00 28.39 0.61 After
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Insertion 38316 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Deletion 38316 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Substitution 38220 44.18 29.00 28.31 0.69 After
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Insertion 38208 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Deletion 38208 4.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Substitution 38342 39.05 29.00 27.78 1.22 After
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Insertion 38329 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Deletion 38329 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Substitution 38861 46.71 28.00 27.88 0.12 After
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Insertion 38861 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Deletion 38861 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Substitution 38344 49.10 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Insertion 38332 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Deletion 38332 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Substitution 38308 65.03 28.00 27.59 0.41 After
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Insertion 38294 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Deletion 38294 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Substitution 38312 45.72 28.00 27.88 0.12 After
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Insertion 38295 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Deletion 38295 4.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Substitution 38299 51.62 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Insertion 38277 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Deletion 38277 5.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Substitution 38211 47.96 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Insertion 38189 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Deletion 38189 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Substitution 38266 54.82 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Insertion 38230 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Deletion 38230 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Substitution 38297 41.64 29.00 27.86 1.14 After
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Insertion 38246 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Deletion 38246 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Substitution 38212 62.55 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Insertion 38162 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Deletion 38162 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Substitution 38144 45.40 29.00 28.06 0.94 After
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Insertion 38088 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Deletion 38088 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Substitution 38193 47.02 28.00 27.88 0.12 After
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Insertion 38133 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Deletion 38133 4.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Substitution 38720 42.51 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Insertion 38720 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Deletion 38720 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Substitution 38105 50.17 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Insertion 38042 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Deletion 38042 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Substitution 38097 42.49 29.00 27.71 1.29 After
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Insertion 38033 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Deletion 38033 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Substitution 38122 54.01 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Insertion 38053 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Deletion 38053 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Substitution 38019 56.61 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Insertion 37952 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Deletion 37952 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Substitution 38044 43.36 29.00 27.66 1.34 After
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Insertion 37973 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Deletion 37973 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Substitution 37931 61.23 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Insertion 37855 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Deletion 37855 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Substitution 37911 48.51 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Insertion 37820 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Deletion 37820 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Substitution 38067 47.85 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Insertion 37962 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Deletion 37962 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Substitution 38094 53.94 28.00 27.98 0.02 After
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Insertion 37984 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Deletion 37984 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Substitution 38037 56.01 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Insertion 37930 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Deletion 37930 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Substitution 38763 43.70 29.00 28.02 0.98 After
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Insertion 38763 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Deletion 38763 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Substitution 37982 44.92 29.00 28.04 0.96 After
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Insertion 37874 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Deletion 37874 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Substitution 37991 33.77 29.00 27.48 1.52 After
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Insertion 37879 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Deletion 37879 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Substitution 37773 52.04 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Insertion 37651 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Deletion 37651 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Substitution 37942 68.08 27.00 27.37 -0.37 After
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Insertion 37803 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Deletion 37803 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Substitution 37754 43.77 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Insertion 37601 2.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Deletion 37601 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Substitution 37721 48.57 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Insertion 37563 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Deletion 37563 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Substitution 37769 47.72 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Insertion 37622 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Deletion 37622 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Substitution 37780 58.25 28.00 27.34 0.66 After
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Insertion 37638 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Deletion 37638 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Substitution 37613 58.02 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Insertion 37464 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Deletion 37464 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Substitution 37666 53.92 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Insertion 37493 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Deletion 37493 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Substitution 38750 33.33 30.00 28.31 1.69 After
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Insertion 38750 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Deletion 38750 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Substitution 37512 56.93 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Insertion 37330 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Deletion 37330 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Substitution 37467 71.48 27.00 27.28 -0.28 After
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Insertion 37280 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Deletion 37280 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Substitution 37446 51.78 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Insertion 37250 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Deletion 37250 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Substitution 37398 62.32 28.00 27.31 0.69 After
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Insertion 37213 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Deletion 37213 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Substitution 37335 65.87 27.00 27.42 -0.42 After
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Insertion 37136 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Deletion 37136 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Substitution 37224 58.76 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Insertion 37011 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Deletion 37011 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Substitution 37148 65.33 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Insertion 36928 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Deletion 36928 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Substitution 37240 57.89 28.00 27.36 0.64 After
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Insertion 37005 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Deletion 37005 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Substitution 37132 53.41 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Insertion 36894 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Deletion 36894 3.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Substitution 36930 66.55 27.00 27.58 -0.58 After
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Insertion 36684 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Deletion 36684 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Substitution 38857 41.89 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Insertion 38857 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Deletion 38857 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Substitution 36932 55.69 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Insertion 36681 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Deletion 36681 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Substitution 36876 60.96 28.00 27.36 0.64 After
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Insertion 36643 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Deletion 36643 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Substitution 36951 66.62 27.00 27.18 -0.18 After
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Insertion 36712 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Deletion 36712 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Substitution 36817 54.08 28.00 27.10 0.90 After
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Insertion 36574 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Deletion 36574 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Substitution 36852 64.16 28.00 27.20 0.80 After
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Insertion 36620 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Deletion 36620 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Substitution 36690 55.55 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Insertion 36423 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Deletion 36423 4.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Substitution 36679 67.14 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Insertion 36403 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Deletion 36403 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Substitution 36501 57.53 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Insertion 36216 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Deletion 36216 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Substitution 36531 59.51 28.00 27.10 0.90 After
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Insertion 36240 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Deletion 36240 4.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Substitution 36394 60.23 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Insertion 36114 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Deletion 36114 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 10 QualityScore Base Substitution 34580 3735.58 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L004 11 QualityScore Base Substitution 15120 1070.51 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L004 12 QualityScore Base Substitution 11817 679.44 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L004 13 QualityScore Base Substitution 21324 738.01 14.00 13.00 1.00 After
REGRESSION.HCC1395_tumor.L004 14 QualityScore Base Substitution 12753 196.90 17.00 14.00 3.00 After
REGRESSION.HCC1395_tumor.L004 15 QualityScore Base Substitution 17078 13.79 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L004 16 QualityScore Base Substitution 8300 4.05 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L004 17 QualityScore Base Substitution 14241 3.25 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L004 22 QualityScore Base Substitution 7961 2.59 24.00 22.00 2.00 After
REGRESSION.HCC1395_tumor.L004 23 QualityScore Base Substitution 39182 206.75 23.00 23.00 0.00 After
REGRESSION.HCC1395_tumor.L004 24 QualityScore Base Substitution 124742 634.17 23.00 24.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 25 QualityScore Base Substitution 102808 294.29 25.00 25.00 0.00 After
REGRESSION.HCC1395_tumor.L004 26 QualityScore Base Substitution 66193 101.49 27.00 26.00 1.00 After
REGRESSION.HCC1395_tumor.L004 28 QualityScore Base Substitution 7913 0.43 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L004 29 QualityScore Base Substitution 68428 110.36 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 30 QualityScore Base Substitution 2544390 1617.77 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L004 31 QualityScore Base Substitution 2864333 1289.32 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L004 32 QualityScore Base Substitution 4678251 1060.01 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L004 33 QualityScore Base Substitution 310233 48.08 35.00 33.00 2.00 After
REGRESSION.HCC1395_tumor.L004 45 QualityScore Base Insertion 10994676 488.89 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 45 QualityScore Base Deletion 10994676 1026.88 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L004 7 QualityScore Base Substitution 182 34.00 7.00 7.00 0.00 After
REGRESSION.HCC1395_tumor.L004 8 QualityScore Base Substitution 8267 1434.44 8.00 8.00 0.00 After
REGRESSION.HCC1395_tumor.L004 9 QualityScore Base Substitution 36580 5277.50 8.00 9.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 AA Context Base Substitution 826822 1750.34 27.00 25.55 1.45 After
REGRESSION.HCC1395_tumor.L005 AAA Context Base Insertion 293115 54.70 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L005 AAA Context Base Deletion 293115 186.66 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L005 AAC Context Base Insertion 131652 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AAC Context Base Deletion 131652 7.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AAG Context Base Insertion 197200 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AAG Context Base Deletion 197200 10.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AAT Context Base Insertion 171676 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AAT Context Base Deletion 171676 14.55 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 AC Context Base Substitution 529374 1768.33 25.00 24.72 0.28 After
REGRESSION.HCC1395_tumor.L005 ACA Context Base Insertion 204101 19.62 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 ACA Context Base Deletion 204101 37.75 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L005 ACC Context Base Insertion 146295 5.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ACC Context Base Deletion 146295 7.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ACG Context Base Insertion 30640 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ACG Context Base Deletion 30640 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ACT Context Base Insertion 157102 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ACT Context Base Deletion 157102 11.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AG Context Base Substitution 797009 585.32 31.00 28.80 2.20 After
REGRESSION.HCC1395_tumor.L005 AGA Context Base Insertion 221126 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGA Context Base Deletion 221126 11.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGC Context Base Insertion 191933 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGC Context Base Deletion 191933 7.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGG Context Base Insertion 227313 13.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGG Context Base Deletion 227313 7.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGT Context Base Insertion 153563 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGT Context Base Deletion 153563 5.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AT Context Base Substitution 596692 618.47 30.00 27.62 2.38 After
REGRESSION.HCC1395_tumor.L005 ATA Context Base Insertion 132778 9.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATA Context Base Deletion 132778 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATC Context Base Insertion 120845 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATC Context Base Deletion 120845 8.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATG Context Base Insertion 172828 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATG Context Base Deletion 172828 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATT Context Base Insertion 180268 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATT Context Base Deletion 180268 7.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CA Context Base Substitution 854324 1748.89 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L005 CAA Context Base Insertion 170950 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CAA Context Base Deletion 170950 9.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CAC Context Base Insertion 183698 22.54 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 CAC Context Base Deletion 183698 34.31 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L005 CAG Context Base Insertion 291545 7.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CAG Context Base Deletion 291545 12.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CAT Context Base Insertion 169135 5.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CAT Context Base Deletion 169135 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CC Context Base Substitution 765061 2438.13 25.00 24.59 0.41 After
REGRESSION.HCC1395_tumor.L005 CCA Context Base Insertion 245375 4.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCA Context Base Deletion 245375 5.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCC Context Base Insertion 213129 9.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCC Context Base Deletion 213129 15.95 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 CCG Context Base Insertion 53288 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCG Context Base Deletion 53288 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCT Context Base Insertion 242968 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCT Context Base Deletion 242968 11.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CG Context Base Substitution 160153 569.26 24.00 24.84 -0.84 After
REGRESSION.HCC1395_tumor.L005 CGA Context Base Insertion 56245 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGA Context Base Deletion 56245 0.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGC Context Base Insertion 80711 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGC Context Base Deletion 80711 6.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGG Context Base Insertion 97192 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGG Context Base Deletion 97192 6.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGT Context Base Insertion 62549 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGT Context Base Deletion 62549 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CT Context Base Substitution 838109 426.94 33.00 29.37 3.63 After
REGRESSION.HCC1395_tumor.L005 CTA Context Base Insertion 96374 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTA Context Base Deletion 96374 5.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTC Context Base Insertion 201872 5.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTC Context Base Deletion 201872 16.05 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 CTG Context Base Insertion 292945 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTG Context Base Deletion 292945 10.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTT Context Base Insertion 208156 7.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTT Context Base Deletion 208156 10.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GA Context Base Substitution 699558 1051.95 28.00 26.54 1.46 After
REGRESSION.HCC1395_tumor.L005 GAA Context Base Insertion 207424 5.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAA Context Base Deletion 207424 9.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAC Context Base Insertion 117505 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAC Context Base Deletion 117505 6.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAG Context Base Insertion 206651 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAG Context Base Deletion 206651 10.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAT Context Base Insertion 125022 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAT Context Base Deletion 125022 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GC Context Base Substitution 662485 1468.61 27.00 25.91 1.09 After
REGRESSION.HCC1395_tumor.L005 GCA Context Base Insertion 204272 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCA Context Base Deletion 204272 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCC Context Base Insertion 199383 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCC Context Base Deletion 199383 8.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCG Context Base Insertion 48803 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCG Context Base Deletion 48803 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCT Context Base Insertion 209736 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCT Context Base Deletion 209736 5.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GG Context Base Substitution 789940 764.02 30.00 27.69 2.31 After
REGRESSION.HCC1395_tumor.L005 GGA Context Base Insertion 214073 18.92 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 GGA Context Base Deletion 214073 14.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GGC Context Base Insertion 196544 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GGC Context Base Deletion 196544 4.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GGG Context Base Insertion 218515 11.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GGG Context Base Deletion 218515 24.52 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 GGT Context Base Insertion 158246 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GGT Context Base Deletion 158246 4.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GT Context Base Substitution 588006 1019.97 28.00 26.93 1.07 After
REGRESSION.HCC1395_tumor.L005 GTA Context Base Insertion 100360 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTA Context Base Deletion 100360 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTC Context Base Insertion 126100 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTC Context Base Deletion 126100 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTG Context Base Insertion 200094 11.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTG Context Base Deletion 200094 29.89 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 GTT Context Base Insertion 148065 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTT Context Base Deletion 148065 10.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TA Context Base Substitution 478585 1202.41 26.00 25.02 0.98 After
REGRESSION.HCC1395_tumor.L005 TAA Context Base Insertion 148068 10.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAA Context Base Deletion 148068 11.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAC Context Base Insertion 93141 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAC Context Base Deletion 93141 5.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAG Context Base Insertion 95656 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAG Context Base Deletion 95656 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAT Context Base Insertion 126550 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAT Context Base Deletion 126550 5.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TC Context Base Substitution 644791 1569.03 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L005 TCA Context Base Insertion 193907 6.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCA Context Base Deletion 193907 13.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCC Context Base Insertion 201157 34.26 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 TCC Context Base Deletion 201157 8.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCG Context Base Insertion 26268 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCG Context Base Deletion 26268 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCT Context Base Insertion 222463 7.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCT Context Base Deletion 222463 12.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TG Context Base Substitution 841606 355.64 33.00 29.40 3.60 After
REGRESSION.HCC1395_tumor.L005 TGA Context Base Insertion 202820 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGA Context Base Deletion 202820 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGC Context Base Insertion 189097 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGC Context Base Deletion 189097 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGG Context Base Insertion 241080 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGG Context Base Deletion 241080 6.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGT Context Base Insertion 209856 13.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGT Context Base Deletion 209856 32.33 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 TT Context Base Substitution 832810 911.23 30.00 28.29 1.71 After
REGRESSION.HCC1395_tumor.L005 TTA Context Base Insertion 145489 7.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTA Context Base Deletion 145489 7.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTC Context Base Insertion 192013 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTC Context Base Deletion 192013 14.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTG Context Base Insertion 169813 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTG Context Base Deletion 169813 7.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTT Context Base Insertion 290823 50.58 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L005 TTT Context Base Deletion 290823 170.25 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L005 -1 Cycle Base Substitution 38477 141.22 24.00 23.52 0.48 After
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Substitution 38809 60.31 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Insertion 38809 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Deletion 38809 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Substitution 36192 66.20 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Insertion 35871 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Deletion 35871 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Substitution 36198 100.13 26.00 25.95 0.05 After
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Insertion 35867 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Deletion 35867 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Substitution 36080 69.42 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Insertion 35748 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Deletion 35748 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Substitution 36040 86.08 26.00 25.88 0.12 After
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Insertion 35718 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Deletion 35718 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Substitution 35895 75.07 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Insertion 35584 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Deletion 35584 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Substitution 35702 68.05 27.00 26.38 0.62 After
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Insertion 35383 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Deletion 35383 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Substitution 35738 73.34 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Insertion 35423 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Deletion 35423 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Substitution 35527 75.33 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Insertion 35200 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Deletion 35200 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Substitution 35563 80.56 26.00 26.64 -0.64 After
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Insertion 35234 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Deletion 35234 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Substitution 35525 73.75 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Insertion 35207 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Deletion 35207 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Substitution 38638 55.92 28.00 27.56 0.44 After
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Insertion 38638 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Deletion 38638 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Substitution 35437 79.53 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Insertion 35102 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Deletion 35102 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Substitution 35369 70.49 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Insertion 35039 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Deletion 35039 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Substitution 35290 64.96 27.00 26.35 0.65 After
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Insertion 34937 0.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Deletion 34937 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Substitution 35165 90.82 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Insertion 34811 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Deletion 34811 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Substitution 34972 86.51 26.00 26.30 -0.30 After
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Insertion 34634 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Deletion 34634 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Substitution 34941 93.80 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Insertion 34579 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Deletion 34579 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Substitution 34839 76.98 27.00 26.38 0.62 After
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Insertion 34479 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Deletion 34479 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Substitution 34867 86.75 26.00 25.75 0.25 After
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Insertion 34503 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Deletion 34503 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Substitution 34718 90.06 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Insertion 34350 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Deletion 34350 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Substitution 34685 83.89 26.00 26.28 -0.28 After
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Insertion 34326 0.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Deletion 34326 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Substitution 38716 61.48 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Insertion 38716 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Deletion 38716 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Substitution 34596 72.98 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Insertion 34241 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Deletion 34241 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Substitution 34456 63.70 27.00 26.25 0.75 After
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Insertion 34106 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Deletion 34106 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Substitution 34409 75.70 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Insertion 34062 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Deletion 34062 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Substitution 34338 75.01 27.00 26.20 0.80 After
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Insertion 33970 0.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Deletion 33970 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Substitution 34241 103.43 25.00 25.62 -0.62 After
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Insertion 33853 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Deletion 33853 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Substitution 34244 74.33 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Insertion 33851 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Deletion 33851 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Substitution 34004 62.81 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Insertion 33624 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Deletion 33624 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Substitution 33883 65.27 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Insertion 33486 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Deletion 33486 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Substitution 33837 71.21 27.00 26.32 0.68 After
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Insertion 33429 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Deletion 33429 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Substitution 33822 82.00 26.00 26.15 -0.15 After
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Insertion 33415 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Deletion 33415 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Substitution 38637 63.37 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Insertion 38637 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Deletion 38637 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Substitution 33571 77.91 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Insertion 33163 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Deletion 33163 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Substitution 33552 81.20 26.00 26.09 -0.09 After
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Insertion 33131 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Deletion 33131 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Substitution 33401 78.47 26.00 26.12 -0.12 After
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Insertion 33002 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Deletion 33002 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Substitution 33346 71.48 27.00 26.21 0.79 After
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Insertion 32949 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Deletion 32949 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Substitution 33239 81.84 26.00 26.06 -0.06 After
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Insertion 32825 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Deletion 32825 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Substitution 33115 87.55 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Insertion 32708 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Deletion 32708 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Substitution 33040 56.44 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Insertion 32624 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Deletion 32624 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Substitution 32915 83.66 26.00 26.10 -0.10 After
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Insertion 32484 0.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Deletion 32484 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Substitution 32807 76.32 26.00 25.54 0.46 After
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Insertion 32335 0.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Deletion 32335 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Substitution 32779 66.48 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Insertion 32309 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Deletion 32309 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Substitution 38777 52.26 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Insertion 38777 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Deletion 38777 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Substitution 32630 62.96 27.00 26.25 0.75 After
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Insertion 32122 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Deletion 32122 0.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Substitution 32471 56.04 27.00 26.20 0.80 After
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Insertion 31941 0.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Deletion 31941 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Substitution 32396 49.16 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Insertion 31814 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Deletion 31814 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Substitution 32295 55.60 27.00 26.26 0.74 After
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Insertion 31641 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Deletion 31641 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Substitution 32065 46.44 28.00 26.44 1.56 After
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Insertion 31357 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Deletion 31357 0.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Substitution 32086 52.33 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Insertion 24781 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Deletion 24781 0.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Substitution 31884 21.48 28.00 26.36 1.64 After
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Insertion 24697 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Deletion 24697 0.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -147 Cycle Base Substitution 31743 28.62 26.00 23.11 2.89 After
REGRESSION.HCC1395_tumor.L005 -148 Cycle Base Substitution 31483 27.85 23.00 16.12 6.88 After
REGRESSION.HCC1395_tumor.L005 -149 Cycle Base Substitution 19549 23.00 22.00 14.17 7.83 After
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Substitution 38755 41.62 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Insertion 38755 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Deletion 38755 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -150 Cycle Base Substitution 6858 15.20 26.00 26.57 -0.57 After
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Substitution 38784 53.76 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Insertion 38784 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Deletion 38784 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Substitution 38712 56.05 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Insertion 38712 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Deletion 38712 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Substitution 38694 45.45 29.00 27.76 1.24 After
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Insertion 38694 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Deletion 38694 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Substitution 38576 49.60 28.00 27.75 0.25 After
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Insertion 38576 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Deletion 38576 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -2 Cycle Base Substitution 38904 125.75 25.00 25.66 -0.66 After
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Substitution 38629 52.14 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Insertion 38629 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Deletion 38629 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Substitution 38577 53.18 28.00 27.87 0.13 After
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Insertion 38577 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Deletion 38577 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Substitution 38611 42.04 29.00 27.73 1.27 After
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Insertion 38611 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Deletion 38611 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Substitution 38562 44.00 29.00 27.73 1.27 After
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Insertion 38562 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Deletion 38562 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Substitution 38614 57.42 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Insertion 38613 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Deletion 38613 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Substitution 38569 50.01 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Insertion 38568 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Deletion 38568 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Substitution 38582 73.85 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Insertion 38582 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Deletion 38582 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Substitution 38521 47.85 28.00 26.83 1.17 After
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Insertion 38520 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Deletion 38520 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Substitution 38561 67.45 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Insertion 38557 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Deletion 38557 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Substitution 38572 66.14 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Insertion 38565 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Deletion 38565 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -3 Cycle Base Substitution 38999 126.42 25.00 25.84 -0.84 After
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Substitution 38612 61.62 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Insertion 38605 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Deletion 38605 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Substitution 38468 56.37 28.00 26.83 1.17 After
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Insertion 38459 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Deletion 38459 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Substitution 38545 53.23 28.00 27.20 0.80 After
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Insertion 38541 5.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Deletion 38541 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Substitution 38510 58.68 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Insertion 38505 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Deletion 38505 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Substitution 38561 51.18 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Insertion 38557 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Deletion 38557 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Substitution 38527 55.69 28.00 26.78 1.22 After
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Insertion 38523 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Deletion 38523 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Substitution 38418 53.77 28.00 26.80 1.20 After
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Insertion 38414 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Deletion 38414 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Substitution 38486 48.05 28.00 26.90 1.10 After
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Insertion 38483 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Deletion 38483 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Substitution 38476 43.76 29.00 27.37 1.63 After
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Insertion 38473 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Deletion 38473 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Substitution 38517 64.76 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Insertion 38516 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Deletion 38516 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -4 Cycle Base Substitution 38839 77.45 27.00 26.03 0.97 After
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Substitution 38511 65.67 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Insertion 38507 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Deletion 38507 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Substitution 38444 49.09 28.00 27.11 0.89 After
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Insertion 38440 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Deletion 38440 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Substitution 38383 58.88 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Insertion 38377 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Deletion 38377 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Substitution 38406 50.47 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Insertion 38397 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Deletion 38397 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Substitution 38280 62.95 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Insertion 38274 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Deletion 38274 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Substitution 38252 61.12 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Insertion 38244 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Deletion 38244 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Substitution 38369 59.50 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Insertion 38358 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Deletion 38358 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Substitution 38383 62.54 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Insertion 38370 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Deletion 38370 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Substitution 38318 58.50 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Insertion 38302 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Deletion 38302 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Substitution 38371 54.04 28.00 26.98 1.02 After
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Insertion 38351 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Deletion 38351 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Substitution 38916 53.87 28.00 26.85 1.15 After
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Insertion 38916 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Deletion 38916 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Substitution 38351 69.98 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Insertion 38331 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Deletion 38331 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Substitution 38239 62.36 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Insertion 38218 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Deletion 38218 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Substitution 38253 59.00 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Insertion 38220 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Deletion 38220 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Substitution 38303 56.39 28.00 26.87 1.13 After
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Insertion 38269 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Deletion 38269 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Substitution 38413 57.69 28.00 27.05 0.95 After
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Insertion 38368 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Deletion 38368 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Substitution 38262 80.16 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Insertion 38216 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Deletion 38216 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Substitution 38209 78.95 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Insertion 38161 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Deletion 38161 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Substitution 38301 59.94 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Insertion 38257 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Deletion 38257 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Substitution 38176 72.65 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Insertion 38126 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Deletion 38126 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Substitution 38098 62.59 28.00 27.11 0.89 After
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Insertion 38044 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Deletion 38044 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Substitution 38824 64.39 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Insertion 38824 0.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Deletion 38824 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Substitution 38155 69.58 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Insertion 38104 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Deletion 38104 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Substitution 38248 68.43 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Insertion 38186 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Deletion 38186 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Substitution 38201 65.00 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Insertion 38130 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Deletion 38130 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Substitution 38085 64.30 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Insertion 38012 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Deletion 38012 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Substitution 38036 69.01 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Insertion 37971 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Deletion 37971 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Substitution 38047 63.33 28.00 27.05 0.95 After
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Insertion 37981 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Deletion 37981 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Substitution 38047 76.20 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Insertion 37959 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Deletion 37959 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Substitution 38123 66.22 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Insertion 38037 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Deletion 38037 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Substitution 38122 59.92 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Insertion 38014 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Deletion 38014 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Substitution 37944 58.91 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Insertion 37844 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Deletion 37844 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Substitution 38899 60.96 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Insertion 38899 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Deletion 38899 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Substitution 38028 71.32 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Insertion 37909 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Deletion 37909 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Substitution 37883 68.44 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Insertion 37757 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Deletion 37757 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Substitution 37851 58.08 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Insertion 37715 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Deletion 37715 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Substitution 37753 47.37 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Insertion 37619 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Deletion 37619 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Substitution 37784 66.38 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Insertion 37642 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Deletion 37642 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Substitution 37683 64.34 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Insertion 37542 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Deletion 37542 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Substitution 37626 77.41 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Insertion 37473 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Deletion 37473 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Substitution 37621 65.74 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Insertion 37465 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Deletion 37465 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Substitution 37687 71.18 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Insertion 37519 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Deletion 37519 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Substitution 37770 69.54 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Insertion 37586 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Deletion 37586 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Substitution 38799 63.80 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Insertion 38799 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Deletion 38799 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Substitution 37528 72.45 27.00 27.15 -0.15 After
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Insertion 37345 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Deletion 37345 4.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Substitution 37434 54.99 28.00 26.80 1.20 After
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Insertion 37246 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Deletion 37246 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Substitution 37423 76.92 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Insertion 37217 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Deletion 37217 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Substitution 37349 75.45 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Insertion 37135 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Deletion 37135 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Substitution 37216 68.67 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Insertion 36993 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Deletion 36993 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Substitution 37233 81.77 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Insertion 36994 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Deletion 36994 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Substitution 37374 62.68 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Insertion 37130 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Deletion 37130 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Substitution 37271 80.93 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Insertion 37039 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Deletion 37039 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Substitution 37072 70.36 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Insertion 36824 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Deletion 36824 2.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Substitution 37051 78.81 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Insertion 36803 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Deletion 36803 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Substitution 38757 58.30 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Insertion 38757 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Deletion 38757 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Substitution 36977 61.67 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Insertion 36717 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Deletion 36717 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Substitution 36870 83.00 26.00 26.33 -0.33 After
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Insertion 36592 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Deletion 36592 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Substitution 36864 73.72 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Insertion 36595 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Deletion 36595 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Substitution 36806 73.53 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Insertion 36532 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Deletion 36532 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Substitution 36749 83.99 26.00 25.83 0.17 After
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Insertion 36437 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Deletion 36437 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Substitution 36490 72.13 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Insertion 36187 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Deletion 36187 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Substitution 36460 72.27 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Insertion 36140 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Deletion 36140 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Substitution 36439 86.23 26.00 26.58 -0.58 After
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Insertion 36109 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Deletion 36109 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Substitution 36185 70.48 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Insertion 35862 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Deletion 35862 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Substitution 36306 72.05 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Insertion 35975 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Deletion 35975 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 1 Cycle Base Substitution 38473 83.11 27.00 26.07 0.93 After
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Substitution 38796 34.92 29.00 28.23 0.77 After
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Insertion 38796 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Deletion 38796 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Substitution 36356 64.15 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Insertion 36045 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Deletion 36045 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Substitution 36245 61.27 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Insertion 35927 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Deletion 35927 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Substitution 36188 61.13 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Insertion 35866 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Deletion 35866 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Substitution 35981 53.76 28.00 26.89 1.11 After
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Insertion 35668 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Deletion 35668 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Substitution 35933 56.81 28.00 27.28 0.72 After
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Insertion 35620 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Deletion 35620 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Substitution 35807 58.53 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Insertion 35493 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Deletion 35493 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Substitution 35791 73.35 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Insertion 35469 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Deletion 35469 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Substitution 35801 60.70 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Insertion 35500 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Deletion 35500 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Substitution 35687 84.16 26.00 26.63 -0.63 After
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Insertion 35365 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Deletion 35365 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Substitution 35612 74.04 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Insertion 35296 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Deletion 35296 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Substitution 38794 61.42 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Insertion 38794 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Deletion 38794 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Substitution 35496 74.06 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Insertion 35165 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Deletion 35165 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Substitution 35359 68.82 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Insertion 35019 0.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Deletion 35019 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Substitution 35170 61.31 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Insertion 34814 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Deletion 34814 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Substitution 35222 73.66 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Insertion 34873 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Deletion 34873 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Substitution 35140 69.45 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Insertion 34796 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Deletion 34796 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Substitution 35141 58.24 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Insertion 34796 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Deletion 34796 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Substitution 34925 79.92 26.00 26.58 -0.58 After
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Insertion 34593 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Deletion 34593 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Substitution 34897 65.29 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Insertion 34565 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Deletion 34565 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Substitution 34761 66.63 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Insertion 34416 0.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Deletion 34416 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Substitution 34700 86.96 26.00 26.10 -0.10 After
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Insertion 34376 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Deletion 34376 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Substitution 38688 56.63 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Insertion 38688 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Deletion 38688 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Substitution 34583 77.44 26.00 26.42 -0.42 After
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Insertion 34274 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Deletion 34274 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Substitution 34570 67.48 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Insertion 34238 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Deletion 34238 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Substitution 34511 66.84 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Insertion 34181 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Deletion 34181 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Substitution 34366 76.06 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Insertion 33988 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Deletion 33988 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Substitution 34383 78.15 26.00 26.63 -0.63 After
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Insertion 33991 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Deletion 33991 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Substitution 34207 61.21 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Insertion 33826 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Deletion 33826 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Substitution 34139 72.29 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Insertion 33761 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Deletion 33761 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Substitution 34145 82.79 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Insertion 33760 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Deletion 33760 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Substitution 33955 83.23 26.00 26.57 -0.57 After
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Insertion 33581 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Deletion 33581 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Substitution 33872 89.73 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Insertion 33477 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Deletion 33477 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Substitution 38648 41.20 29.00 27.51 1.49 After
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Insertion 38648 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Deletion 38648 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Substitution 33740 63.53 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Insertion 33354 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Deletion 33354 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Substitution 33627 59.18 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Insertion 33240 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Deletion 33240 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Substitution 33576 76.67 26.00 26.49 -0.49 After
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Insertion 33193 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Deletion 33193 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Substitution 33459 62.86 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Insertion 33078 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Deletion 33078 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Substitution 33370 67.83 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Insertion 32972 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Deletion 32972 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Substitution 33337 53.61 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Insertion 32946 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Deletion 32946 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Substitution 33242 67.64 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Insertion 32840 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Deletion 32840 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Substitution 33081 59.40 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Insertion 32682 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Deletion 32682 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Substitution 33044 68.06 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Insertion 32642 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Deletion 32642 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Substitution 32989 74.39 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Insertion 32557 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Deletion 32557 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Substitution 38750 44.12 29.00 27.58 1.42 After
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Insertion 38750 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Deletion 38750 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Substitution 32845 76.13 26.00 26.60 -0.60 After
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Insertion 32422 0.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Deletion 32422 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Substitution 32718 82.85 26.00 25.93 0.07 After
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Insertion 32293 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Deletion 32293 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Substitution 32594 76.90 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Insertion 32164 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Deletion 32164 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Substitution 32541 68.94 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Insertion 32103 0.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Deletion 32103 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Substitution 32353 67.49 27.00 26.32 0.68 After
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Insertion 31889 0.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Deletion 31889 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Substitution 32331 65.57 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Insertion 31861 0.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Deletion 31861 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Substitution 32250 71.16 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Insertion 31811 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Deletion 31811 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 147 Cycle Base Substitution 32116 77.63 26.00 26.62 -0.62 After
REGRESSION.HCC1395_tumor.L005 148 Cycle Base Substitution 31938 73.37 26.00 26.43 -0.43 After
REGRESSION.HCC1395_tumor.L005 149 Cycle Base Substitution 31834 73.18 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Substitution 38639 39.13 29.00 27.69 1.31 After
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Insertion 38639 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Deletion 38639 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 150 Cycle Base Substitution 31758 63.73 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Substitution 38664 33.93 29.00 28.66 0.34 After
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Insertion 38664 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Deletion 38664 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Substitution 38726 27.35 30.00 28.77 1.23 After
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Insertion 38726 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Deletion 38726 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Substitution 38634 26.91 30.00 28.57 1.43 After
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Insertion 38634 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Deletion 38634 4.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Substitution 38718 20.87 30.00 28.54 1.46 After
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Insertion 38718 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Deletion 38718 4.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 2 Cycle Base Substitution 38861 90.34 26.00 26.91 -0.91 After
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Substitution 38663 26.92 30.00 28.58 1.42 After
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Insertion 38663 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Deletion 38663 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Substitution 38558 35.01 29.00 28.73 0.27 After
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Insertion 38558 2.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Deletion 38558 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Substitution 38630 26.04 30.00 29.27 0.73 After
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Insertion 38630 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Deletion 38630 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Substitution 38608 34.23 29.00 28.58 0.42 After
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Insertion 38608 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Deletion 38608 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Substitution 38491 34.01 29.00 28.73 0.27 After
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Insertion 38491 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Deletion 38491 5.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Substitution 38625 16.47 30.00 28.63 1.37 After
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Insertion 38625 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Deletion 38625 5.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Substitution 38622 35.15 29.00 27.75 1.25 After
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Insertion 38622 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Deletion 38622 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Substitution 38427 37.93 29.00 27.79 1.21 After
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Insertion 38426 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Deletion 38426 5.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Substitution 38534 42.38 29.00 27.61 1.39 After
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Insertion 38534 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Deletion 38534 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Substitution 38447 43.65 29.00 27.98 1.02 After
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Insertion 38446 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Deletion 38446 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 3 Cycle Base Substitution 38949 114.19 26.00 27.24 -1.24 After
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Substitution 38462 43.79 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Insertion 38461 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Deletion 38461 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Substitution 38558 44.10 29.00 27.81 1.19 After
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Insertion 38558 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Deletion 38558 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Substitution 38377 66.32 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Insertion 38377 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Deletion 38377 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Substitution 38396 34.62 29.00 27.98 1.02 After
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Insertion 38395 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Deletion 38395 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Substitution 38478 45.32 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Insertion 38475 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Deletion 38475 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Substitution 38531 34.34 29.00 27.68 1.32 After
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Insertion 38527 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Deletion 38527 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Substitution 38547 57.24 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Insertion 38542 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Deletion 38542 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Substitution 38462 39.22 29.00 28.08 0.92 After
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Insertion 38458 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Deletion 38458 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Substitution 38349 52.37 28.00 27.90 0.10 After
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Insertion 38348 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Deletion 38348 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Substitution 38343 34.68 29.00 27.99 1.01 After
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Insertion 38343 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Deletion 38343 4.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 4 Cycle Base Substitution 38809 53.66 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Substitution 38317 37.35 29.00 27.93 1.07 After
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Insertion 38315 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Deletion 38315 5.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Substitution 38327 46.60 28.00 27.72 0.28 After
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Insertion 38323 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Deletion 38323 5.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Substitution 38331 40.48 29.00 27.99 1.01 After
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Insertion 38324 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Deletion 38324 5.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Substitution 38468 37.64 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Insertion 38460 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Deletion 38460 4.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Substitution 38359 51.36 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Insertion 38349 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Deletion 38349 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Substitution 38271 49.15 28.00 27.94 0.06 After
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Insertion 38260 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Deletion 38260 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Substitution 38379 33.57 29.00 28.29 0.71 After
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Insertion 38369 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Deletion 38369 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Substitution 38324 42.34 29.00 27.82 1.18 After
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Insertion 38311 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Deletion 38311 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Substitution 38326 38.06 29.00 27.79 1.21 After
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Insertion 38312 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Deletion 38312 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Substitution 38232 42.79 29.00 27.68 1.32 After
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Insertion 38217 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Deletion 38217 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Substitution 38815 50.21 28.00 27.72 0.28 After
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Insertion 38815 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Deletion 38815 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Substitution 38329 40.94 29.00 27.57 1.43 After
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Insertion 38307 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Deletion 38307 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Substitution 38341 45.18 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Insertion 38317 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Deletion 38317 4.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Substitution 38352 44.68 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Insertion 38329 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Deletion 38329 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Substitution 38288 44.87 28.00 27.83 0.17 After
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Insertion 38258 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Deletion 38258 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Substitution 38192 37.26 29.00 27.73 1.27 After
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Insertion 38155 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Deletion 38155 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Substitution 38303 43.73 29.00 27.84 1.16 After
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Insertion 38262 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Deletion 38262 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Substitution 38135 43.46 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Insertion 38094 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Deletion 38094 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Substitution 38171 67.03 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Insertion 38134 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Deletion 38134 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Substitution 38189 51.69 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Insertion 38152 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Deletion 38152 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Substitution 38174 42.69 29.00 27.53 1.47 After
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Insertion 38128 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Deletion 38128 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Substitution 38773 37.29 29.00 27.60 1.40 After
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Insertion 38773 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Deletion 38773 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Substitution 38236 45.61 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Insertion 38184 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Deletion 38184 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Substitution 38161 40.07 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Insertion 38095 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Deletion 38095 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Substitution 38081 53.10 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Insertion 38013 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Deletion 38013 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Substitution 38180 60.75 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Insertion 38104 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Deletion 38104 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Substitution 38095 56.62 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Insertion 38025 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Deletion 38025 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Substitution 38026 52.25 28.00 27.54 0.46 After
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Insertion 37951 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Deletion 37951 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Substitution 38101 37.61 29.00 27.55 1.45 After
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Insertion 38021 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Deletion 38021 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Substitution 38047 50.53 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Insertion 37964 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Deletion 37964 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Substitution 38025 47.91 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Insertion 37932 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Deletion 37932 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Substitution 38020 50.48 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Insertion 37923 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Deletion 37923 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Substitution 38793 40.98 29.00 27.48 1.52 After
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Insertion 38793 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Deletion 38793 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Substitution 37934 46.13 28.00 27.34 0.66 After
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Insertion 37818 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Deletion 37818 4.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Substitution 37889 57.32 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Insertion 37769 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Deletion 37769 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Substitution 37853 58.20 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Insertion 37730 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Deletion 37730 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Substitution 37800 73.27 27.00 27.20 -0.20 After
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Insertion 37662 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Deletion 37662 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Substitution 37881 54.47 28.00 27.33 0.67 After
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Insertion 37743 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Deletion 37743 5.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Substitution 37833 55.67 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Insertion 37687 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Deletion 37687 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Substitution 37775 52.72 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Insertion 37614 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Deletion 37614 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Substitution 37621 65.42 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Insertion 37458 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Deletion 37458 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Substitution 37639 57.21 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Insertion 37469 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Deletion 37469 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Substitution 37587 67.04 27.00 27.34 -0.34 After
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Insertion 37397 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Deletion 37397 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Substitution 38895 53.07 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Insertion 38895 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Deletion 38895 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Substitution 37544 52.05 28.00 27.37 0.63 After
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Insertion 37362 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Deletion 37362 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Substitution 37499 46.75 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Insertion 37307 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Deletion 37307 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Substitution 37425 60.69 28.00 27.20 0.80 After
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Insertion 37229 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Deletion 37229 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Substitution 37280 58.11 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Insertion 37070 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Deletion 37070 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Substitution 37459 80.70 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Insertion 37231 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Deletion 37231 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Substitution 37283 62.18 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Insertion 37057 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Deletion 37057 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Substitution 37176 62.10 28.00 27.06 0.94 After
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Insertion 36948 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Deletion 36948 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Substitution 37368 49.51 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Insertion 37125 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Deletion 37125 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Substitution 37095 72.24 27.00 27.06 -0.06 After
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Insertion 36844 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Deletion 36844 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Substitution 37205 68.82 27.00 27.05 -0.05 After
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Insertion 36959 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Deletion 36959 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Substitution 38719 39.60 29.00 27.80 1.20 After
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Insertion 38719 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Deletion 38719 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Substitution 37168 73.56 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Insertion 36901 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Deletion 36901 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Substitution 36965 57.86 28.00 27.10 0.90 After
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Insertion 36694 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Deletion 36694 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Substitution 36873 56.16 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Insertion 36593 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Deletion 36593 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Substitution 36722 56.07 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Insertion 36441 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Deletion 36441 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Substitution 36833 48.48 28.00 26.99 1.01 After
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Insertion 36528 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Deletion 36528 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Substitution 36699 69.96 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Insertion 36390 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Deletion 36390 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Substitution 36517 57.23 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Insertion 36199 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Deletion 36199 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Substitution 36499 67.43 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Insertion 36192 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Deletion 36192 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Substitution 36385 69.35 27.00 27.22 -0.22 After
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Insertion 36068 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Deletion 36068 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Substitution 36419 63.15 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Insertion 36097 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Deletion 36097 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 10 QualityScore Base Substitution 25005 2646.70 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L005 11 QualityScore Base Substitution 14821 1072.82 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L005 12 QualityScore Base Substitution 21365 1193.01 13.00 12.00 1.00 After
REGRESSION.HCC1395_tumor.L005 13 QualityScore Base Substitution 11534 236.56 16.00 13.00 3.00 After
REGRESSION.HCC1395_tumor.L005 14 QualityScore Base Substitution 12177 184.01 17.00 14.00 3.00 After
REGRESSION.HCC1395_tumor.L005 15 QualityScore Base Substitution 16792 8.77 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L005 16 QualityScore Base Substitution 8148 1.95 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L005 17 QualityScore Base Substitution 14454 2.87 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L005 21 QualityScore Base Substitution 114 0.00 21.00 21.00 0.00 After
REGRESSION.HCC1395_tumor.L005 22 QualityScore Base Substitution 30880 222.35 22.00 22.00 0.00 After
REGRESSION.HCC1395_tumor.L005 23 QualityScore Base Substitution 69207 442.02 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 24 QualityScore Base Substitution 119091 435.64 24.00 24.00 0.00 After
REGRESSION.HCC1395_tumor.L005 25 QualityScore Base Substitution 121617 209.09 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L005 28 QualityScore Base Substitution 7605 4.55 28.00 28.00 0.00 After
REGRESSION.HCC1395_tumor.L005 29 QualityScore Base Substitution 68303 89.32 29.00 29.00 0.00 After
REGRESSION.HCC1395_tumor.L005 30 QualityScore Base Substitution 2574779 1581.06 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L005 31 QualityScore Base Substitution 2869525 1273.29 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L005 32 QualityScore Base Substitution 4719293 1085.37 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L005 33 QualityScore Base Substitution 222395 39.85 35.00 33.00 2.00 After
REGRESSION.HCC1395_tumor.L005 45 QualityScore Base Insertion 10982285 440.65 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 45 QualityScore Base Deletion 10982285 941.02 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L005 8 QualityScore Base Substitution 1911 357.18 7.00 8.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 9 QualityScore Base Substitution 53269 7386.56 9.00 9.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AA Context Base Substitution 828292 1890.90 26.00 24.98 1.02 After
REGRESSION.HCC1395_tumor.L006 AAA Context Base Insertion 294472 70.68 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L006 AAA Context Base Deletion 294472 204.26 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L006 AAC Context Base Insertion 130733 5.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AAC Context Base Deletion 130733 8.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AAG Context Base Insertion 195794 8.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AAG Context Base Deletion 195794 10.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AAT Context Base Insertion 172592 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AAT Context Base Deletion 172592 15.44 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 AC Context Base Substitution 525272 1772.15 25.00 24.79 0.21 After
REGRESSION.HCC1395_tumor.L006 ACA Context Base Insertion 202998 19.75 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 ACA Context Base Deletion 202998 34.56 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L006 ACC Context Base Insertion 144547 8.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ACC Context Base Deletion 144547 5.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ACG Context Base Insertion 30173 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ACG Context Base Deletion 30173 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ACT Context Base Insertion 156444 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ACT Context Base Deletion 156444 11.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AG Context Base Substitution 791784 609.85 31.00 28.77 2.23 After
REGRESSION.HCC1395_tumor.L006 AGA Context Base Insertion 220346 6.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGA Context Base Deletion 220346 10.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGC Context Base Insertion 190000 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGC Context Base Deletion 190000 8.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGG Context Base Insertion 224703 11.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGG Context Base Deletion 224703 9.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGT Context Base Insertion 153268 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGT Context Base Deletion 153268 4.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AT Context Base Substitution 597545 620.77 30.00 27.66 2.34 After
REGRESSION.HCC1395_tumor.L006 ATA Context Base Insertion 134351 6.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATA Context Base Deletion 134351 5.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATC Context Base Insertion 119988 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATC Context Base Deletion 119988 9.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATG Context Base Insertion 173298 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATG Context Base Deletion 173298 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATT Context Base Insertion 180446 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATT Context Base Deletion 180446 7.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CA Context Base Substitution 847786 1832.74 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L006 CAA Context Base Insertion 170330 6.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CAA Context Base Deletion 170330 11.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CAC Context Base Insertion 181741 20.69 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 CAC Context Base Deletion 181741 32.39 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 CAG Context Base Insertion 289025 8.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CAG Context Base Deletion 289025 11.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CAT Context Base Insertion 168738 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CAT Context Base Deletion 168738 4.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CC Context Base Substitution 753152 2295.16 25.00 24.67 0.33 After
REGRESSION.HCC1395_tumor.L006 CCA Context Base Insertion 242258 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCA Context Base Deletion 242258 7.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCC Context Base Insertion 208506 11.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCC Context Base Deletion 208506 14.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCG Context Base Insertion 53658 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCG Context Base Deletion 53658 5.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCT Context Base Insertion 239280 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCT Context Base Deletion 239280 11.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CG Context Base Substitution 159307 515.99 25.00 24.78 0.22 After
REGRESSION.HCC1395_tumor.L006 CGA Context Base Insertion 55467 0.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGA Context Base Deletion 55467 0.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGC Context Base Insertion 79362 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGC Context Base Deletion 79362 7.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGG Context Base Insertion 96682 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGG Context Base Deletion 96682 7.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGT Context Base Insertion 61794 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGT Context Base Deletion 61794 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CT Context Base Substitution 827859 411.26 33.00 29.45 3.55 After
REGRESSION.HCC1395_tumor.L006 CTA Context Base Insertion 95543 0.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTA Context Base Deletion 95543 6.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTC Context Base Insertion 199445 5.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTC Context Base Deletion 199445 18.22 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 CTG Context Base Insertion 287900 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTG Context Base Deletion 287900 14.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTT Context Base Insertion 207243 8.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTT Context Base Deletion 207243 9.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GA Context Base Substitution 695856 1050.59 28.00 26.55 1.45 After
REGRESSION.HCC1395_tumor.L006 GAA Context Base Insertion 207682 5.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAA Context Base Deletion 207682 8.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAC Context Base Insertion 117299 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAC Context Base Deletion 117299 5.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAG Context Base Insertion 205150 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAG Context Base Deletion 205150 10.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAT Context Base Insertion 124210 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAT Context Base Deletion 124210 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GC Context Base Substitution 654183 1430.05 27.00 25.94 1.06 After
REGRESSION.HCC1395_tumor.L006 GCA Context Base Insertion 202515 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCA Context Base Deletion 202515 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCC Context Base Insertion 196392 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCC Context Base Deletion 196392 10.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCG Context Base Insertion 48494 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCG Context Base Deletion 48494 5.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCT Context Base Insertion 205887 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCT Context Base Deletion 205887 4.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GG Context Base Substitution 780844 714.10 30.00 27.75 2.25 After
REGRESSION.HCC1395_tumor.L006 GGA Context Base Insertion 212419 28.18 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 GGA Context Base Deletion 212419 12.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GGC Context Base Insertion 193536 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GGC Context Base Deletion 193536 6.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GGG Context Base Insertion 216113 14.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GGG Context Base Deletion 216113 28.13 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 GGT Context Base Insertion 156319 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GGT Context Base Deletion 156319 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GT Context Base Substitution 582596 1017.10 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L006 GTA Context Base Insertion 100035 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTA Context Base Deletion 100035 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTC Context Base Insertion 125442 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTC Context Base Deletion 125442 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTG Context Base Insertion 196882 14.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTG Context Base Deletion 196882 33.38 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 GTT Context Base Insertion 147483 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTT Context Base Deletion 147483 11.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TA Context Base Substitution 479623 1149.46 26.00 25.10 0.90 After
REGRESSION.HCC1395_tumor.L006 TAA Context Base Insertion 148750 6.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAA Context Base Deletion 148750 13.98 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 TAC Context Base Insertion 92141 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAC Context Base Deletion 92141 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAG Context Base Insertion 95665 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAG Context Base Deletion 95665 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAT Context Base Insertion 127690 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAT Context Base Deletion 127690 5.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TC Context Base Substitution 639666 1556.85 26.00 26.23 -0.23 After
REGRESSION.HCC1395_tumor.L006 TCA Context Base Insertion 193498 6.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCA Context Base Deletion 193498 14.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCC Context Base Insertion 198856 32.41 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 TCC Context Base Deletion 198856 11.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCG Context Base Insertion 25831 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCG Context Base Deletion 25831 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCT Context Base Insertion 220679 5.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCT Context Base Deletion 220679 13.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TG Context Base Substitution 832915 321.91 33.00 29.50 3.50 After
REGRESSION.HCC1395_tumor.L006 TGA Context Base Insertion 202293 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGA Context Base Deletion 202293 6.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGC Context Base Insertion 187072 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGC Context Base Deletion 187072 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGG Context Base Insertion 237558 5.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGG Context Base Deletion 237558 9.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGT Context Base Insertion 207398 13.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGT Context Base Deletion 207398 32.36 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 TT Context Base Substitution 831450 895.78 30.00 27.70 2.30 After
REGRESSION.HCC1395_tumor.L006 TTA Context Base Insertion 146121 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTA Context Base Deletion 146121 7.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTC Context Base Insertion 190893 4.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTC Context Base Deletion 190893 13.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTG Context Base Insertion 168953 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTG Context Base Deletion 168953 8.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTT Context Base Insertion 290752 60.74 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L006 TTT Context Base Deletion 290752 157.23 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L006 -1 Cycle Base Substitution 38061 145.63 24.00 23.61 0.39 After
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Substitution 38446 53.53 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Insertion 38446 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Deletion 38446 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Substitution 35875 78.70 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Insertion 35564 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Deletion 35564 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Substitution 35890 68.98 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Insertion 35589 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Deletion 35589 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Substitution 35804 87.32 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Insertion 35493 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Deletion 35493 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Substitution 35679 65.61 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Insertion 35383 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Deletion 35383 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Substitution 35663 73.82 27.00 26.27 0.73 After
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Insertion 35362 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Deletion 35362 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Substitution 35631 75.83 27.00 26.38 0.62 After
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Insertion 35339 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Deletion 35339 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Substitution 35493 70.76 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Insertion 35208 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Deletion 35208 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Substitution 35436 68.17 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Insertion 35133 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Deletion 35133 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Substitution 35408 92.94 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Insertion 35102 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Deletion 35102 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Substitution 35212 68.84 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Insertion 34907 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Deletion 34907 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Substitution 38514 49.87 28.00 27.52 0.48 After
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Insertion 38514 2.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Deletion 38514 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Substitution 35146 71.41 27.00 26.24 0.76 After
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Insertion 34835 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Deletion 34835 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Substitution 35130 65.81 27.00 26.26 0.74 After
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Insertion 34816 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Deletion 34816 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Substitution 35105 91.66 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Insertion 34765 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Deletion 34765 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Substitution 35068 77.98 26.00 26.33 -0.33 After
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Insertion 34713 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Deletion 34713 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Substitution 34916 70.42 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Insertion 34551 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Deletion 34551 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Substitution 34739 81.63 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Insertion 34366 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Deletion 34366 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Substitution 34631 92.00 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Insertion 34268 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Deletion 34268 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Substitution 34648 90.62 26.00 26.06 -0.06 After
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Insertion 34274 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Deletion 34274 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Substitution 34527 90.76 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Insertion 34151 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Deletion 34151 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Substitution 34564 110.14 25.00 25.44 -0.44 After
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Insertion 34189 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Deletion 34189 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Substitution 38463 47.02 29.00 28.04 0.96 After
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Insertion 38463 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Deletion 38463 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Substitution 34442 77.38 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Insertion 34081 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Deletion 34081 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Substitution 34222 101.71 25.00 25.45 -0.45 After
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Insertion 33840 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Deletion 33840 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Substitution 34103 73.99 27.00 26.21 0.79 After
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Insertion 33725 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Deletion 33725 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Substitution 34157 84.09 26.00 25.94 0.06 After
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Insertion 33790 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Deletion 33790 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Substitution 34034 87.17 26.00 26.03 -0.03 After
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Insertion 33670 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Deletion 33670 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Substitution 33902 77.46 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Insertion 33526 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Deletion 33526 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Substitution 33804 76.00 26.00 26.24 -0.24 After
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Insertion 33425 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Deletion 33425 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Substitution 33792 77.73 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Insertion 33408 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Deletion 33408 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Substitution 33701 81.17 26.00 26.06 -0.06 After
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Insertion 33304 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Deletion 33304 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Substitution 33653 78.73 26.00 26.28 -0.28 After
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Insertion 33233 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Deletion 33233 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Substitution 38465 68.13 27.00 27.58 -0.58 After
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Insertion 38465 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Deletion 38465 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Substitution 33488 77.61 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Insertion 33087 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Deletion 33087 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Substitution 33429 70.59 27.00 26.11 0.89 After
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Insertion 33028 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Deletion 33028 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Substitution 33268 74.36 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Insertion 32873 0.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Deletion 32873 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Substitution 33091 87.20 26.00 25.89 0.11 After
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Insertion 32713 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Deletion 32713 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Substitution 32966 62.61 27.00 26.23 0.77 After
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Insertion 32577 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Deletion 32577 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Substitution 32901 71.58 27.00 26.02 0.98 After
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Insertion 32497 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Deletion 32497 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Substitution 32903 76.34 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Insertion 32480 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Deletion 32480 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Substitution 32819 81.34 26.00 26.08 -0.08 After
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Insertion 32367 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Deletion 32367 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Substitution 32707 83.24 26.00 25.37 0.63 After
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Insertion 32219 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Deletion 32219 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Substitution 32618 72.28 27.00 26.09 0.91 After
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Insertion 32098 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Deletion 32098 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Substitution 38536 55.84 28.00 27.61 0.39 After
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Insertion 38536 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Deletion 38536 2.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Substitution 32542 65.21 27.00 26.03 0.97 After
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Insertion 32029 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Deletion 32029 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Substitution 32342 61.06 27.00 26.11 0.89 After
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Insertion 31808 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Deletion 31808 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Substitution 32144 69.05 26.00 25.95 0.05 After
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Insertion 31540 0.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Deletion 31540 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Substitution 31994 72.08 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Insertion 31308 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Deletion 31308 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Substitution 31848 32.91 28.00 26.90 1.10 After
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Insertion 31123 0.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Deletion 31123 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Substitution 31636 48.50 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Insertion 24461 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Deletion 24461 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Substitution 31419 20.43 28.00 26.05 1.95 After
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Insertion 24374 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Deletion 24374 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -147 Cycle Base Substitution 31329 30.83 26.00 22.21 3.79 After
REGRESSION.HCC1395_tumor.L006 -148 Cycle Base Substitution 31189 19.38 24.00 16.05 7.95 After
REGRESSION.HCC1395_tumor.L006 -149 Cycle Base Substitution 19387 17.14 22.00 14.11 7.89 After
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Substitution 38431 38.41 29.00 27.55 1.45 After
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Insertion 38431 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Deletion 38431 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -150 Cycle Base Substitution 6838 17.22 26.00 26.73 -0.73 After
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Substitution 38473 48.16 28.00 27.54 0.46 After
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Insertion 38473 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Deletion 38473 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Substitution 38470 45.21 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Insertion 38469 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Deletion 38469 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Substitution 38456 56.14 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Insertion 38455 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Deletion 38455 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Substitution 38455 37.02 29.00 27.80 1.20 After
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Insertion 38454 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Deletion 38454 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -2 Cycle Base Substitution 38500 126.14 25.00 25.58 -0.58 After
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Substitution 38474 59.24 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Insertion 38473 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Deletion 38473 5.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Substitution 38366 50.98 28.00 27.53 0.47 After
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Insertion 38366 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Deletion 38366 4.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Substitution 38354 50.81 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Insertion 38353 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Deletion 38353 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Substitution 38437 39.94 29.00 27.94 1.06 After
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Insertion 38436 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Deletion 38436 6.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Substitution 38411 59.11 28.00 27.59 0.41 After
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Insertion 38410 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Deletion 38410 5.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Substitution 38369 44.92 29.00 28.25 0.75 After
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Insertion 38369 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Deletion 38369 4.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Substitution 38351 62.11 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Insertion 38351 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Deletion 38351 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Substitution 38365 35.31 29.00 27.32 1.68 After
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Insertion 38364 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Deletion 38364 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Substitution 38372 59.77 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Insertion 38372 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Deletion 38372 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Substitution 38168 48.45 28.00 26.81 1.19 After
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Insertion 38164 2.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Deletion 38164 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -3 Cycle Base Substitution 38706 136.89 25.00 25.74 -0.74 After
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Substitution 38260 52.81 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Insertion 38256 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Deletion 38256 5.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Substitution 38185 69.21 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Insertion 38182 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Deletion 38182 4.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Substitution 38277 41.84 28.00 26.70 1.30 After
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Insertion 38273 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Deletion 38273 5.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Substitution 38188 65.78 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Insertion 38185 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Deletion 38185 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Substitution 38263 61.84 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Insertion 38260 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Deletion 38260 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Substitution 38307 52.90 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Insertion 38301 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Deletion 38301 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Substitution 38278 74.53 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Insertion 38272 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Deletion 38272 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Substitution 38286 41.44 29.00 27.40 1.60 After
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Insertion 38280 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Deletion 38280 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Substitution 38218 53.54 28.00 26.56 1.44 After
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Insertion 38211 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Deletion 38211 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Substitution 38219 50.36 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Insertion 38213 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Deletion 38213 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -4 Cycle Base Substitution 38482 80.77 27.00 26.20 0.80 After
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Substitution 38130 43.72 28.00 26.92 1.08 After
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Insertion 38123 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Deletion 38123 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Substitution 38232 65.97 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Insertion 38225 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Deletion 38225 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Substitution 38122 56.84 28.00 26.71 1.29 After
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Insertion 38113 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Deletion 38113 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Substitution 38131 55.89 28.00 26.74 1.26 After
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Insertion 38125 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Deletion 38125 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Substitution 38022 63.34 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Insertion 38017 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Deletion 38017 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Substitution 38145 55.19 28.00 26.87 1.13 After
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Insertion 38134 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Deletion 38134 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Substitution 37988 59.48 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Insertion 37980 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Deletion 37980 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Substitution 38145 60.10 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Insertion 38134 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Deletion 38134 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Substitution 38122 63.18 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Insertion 38113 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Deletion 38113 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Substitution 38081 56.83 28.00 26.75 1.25 After
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Insertion 38074 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Deletion 38074 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Substitution 38505 63.91 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Insertion 38505 0.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Deletion 38505 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Substitution 38047 69.33 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Insertion 38030 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Deletion 38030 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Substitution 38114 64.01 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Insertion 38098 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Deletion 38098 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Substitution 38126 70.49 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Insertion 38106 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Deletion 38106 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Substitution 38043 56.22 28.00 26.80 1.20 After
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Insertion 38014 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Deletion 38014 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Substitution 38038 63.64 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Insertion 38007 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Deletion 38007 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Substitution 37795 59.48 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Insertion 37761 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Deletion 37761 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Substitution 38044 52.95 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Insertion 38001 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Deletion 38001 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Substitution 37902 65.36 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Insertion 37861 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Deletion 37861 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Substitution 38061 71.34 27.00 27.15 -0.15 After
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Insertion 38015 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Deletion 38015 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Substitution 37800 48.80 28.00 26.98 1.02 After
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Insertion 37742 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Deletion 37742 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Substitution 38463 68.14 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Insertion 38463 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Deletion 38463 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Substitution 37800 66.24 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Insertion 37740 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Deletion 37740 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Substitution 37774 65.09 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Insertion 37704 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Deletion 37704 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Substitution 37805 59.27 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Insertion 37734 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Deletion 37734 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Substitution 37909 48.62 28.00 26.88 1.12 After
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Insertion 37834 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Deletion 37834 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Substitution 37806 45.53 28.00 26.74 1.26 After
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Insertion 37725 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Deletion 37725 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Substitution 37746 70.59 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Insertion 37666 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Deletion 37666 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Substitution 37674 56.55 28.00 26.67 1.33 After
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Insertion 37580 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Deletion 37580 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Substitution 37701 71.75 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Insertion 37606 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Deletion 37606 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Substitution 37685 73.22 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Insertion 37592 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Deletion 37592 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Substitution 37710 43.24 29.00 27.12 1.88 After
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Insertion 37601 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Deletion 37601 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Substitution 38408 80.50 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Insertion 38408 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Deletion 38408 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Substitution 37737 72.67 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Insertion 37621 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Deletion 37621 4.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Substitution 37686 72.51 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Insertion 37549 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Deletion 37549 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Substitution 37482 71.67 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Insertion 37345 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Deletion 37345 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Substitution 37461 77.94 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Insertion 37304 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Deletion 37304 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Substitution 37525 78.90 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Insertion 37376 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Deletion 37376 4.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Substitution 37476 66.59 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Insertion 37326 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Deletion 37326 5.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Substitution 37434 59.52 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Insertion 37271 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Deletion 37271 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Substitution 37429 69.30 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Insertion 37254 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Deletion 37254 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Substitution 37249 86.14 26.00 26.72 -0.72 After
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Insertion 37067 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Deletion 37067 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Substitution 37263 57.66 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Insertion 37074 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Deletion 37074 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Substitution 38586 66.46 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Insertion 38586 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Deletion 38586 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Substitution 37417 52.94 28.00 26.82 1.18 After
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Insertion 37216 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Deletion 37216 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Substitution 37211 81.10 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Insertion 36993 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Deletion 36993 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Substitution 37208 79.59 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Insertion 36982 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Deletion 36982 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Substitution 37022 70.99 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Insertion 36780 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Deletion 36780 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Substitution 37059 59.00 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Insertion 36821 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Deletion 36821 5.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Substitution 36994 63.53 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Insertion 36762 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Deletion 36762 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Substitution 36896 73.28 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Insertion 36664 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Deletion 36664 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Substitution 36816 70.11 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Insertion 36582 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Deletion 36582 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Substitution 36840 66.93 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Insertion 36601 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Deletion 36601 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Substitution 36787 76.81 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Insertion 36537 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Deletion 36537 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Substitution 38559 75.81 27.00 27.22 -0.22 After
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Insertion 38559 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Deletion 38559 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Substitution 36645 79.65 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Insertion 36389 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Deletion 36389 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Substitution 36724 74.32 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Insertion 36465 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Deletion 36465 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Substitution 36509 71.89 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Insertion 36236 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Deletion 36236 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Substitution 36346 79.35 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Insertion 36067 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Deletion 36067 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Substitution 36367 74.11 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Insertion 36076 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Deletion 36076 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Substitution 36370 92.87 26.00 26.50 -0.50 After
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Insertion 36079 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Deletion 36079 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Substitution 36242 76.87 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Insertion 35948 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Deletion 35948 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Substitution 36248 66.26 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Insertion 35943 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Deletion 35943 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Substitution 36242 67.21 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Insertion 35936 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Deletion 35936 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Substitution 36068 77.30 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Insertion 35770 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Deletion 35770 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 1 Cycle Base Substitution 38147 78.90 27.00 26.11 0.89 After
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Substitution 38562 44.92 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Insertion 38562 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Deletion 38562 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Substitution 35909 59.88 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Insertion 35609 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Deletion 35609 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Substitution 35887 56.81 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Insertion 35596 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Deletion 35596 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Substitution 35846 44.88 28.00 27.18 0.82 After
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Insertion 35524 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Deletion 35524 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Substitution 35849 61.09 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Insertion 35544 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Deletion 35544 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Substitution 35663 73.23 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Insertion 35375 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Deletion 35375 4.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Substitution 35652 56.81 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Insertion 35358 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Deletion 35358 5.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Substitution 35584 57.16 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Insertion 35314 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Deletion 35314 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Substitution 35483 78.10 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Insertion 35161 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Deletion 35161 4.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Substitution 35331 91.66 26.00 26.03 -0.03 After
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Insertion 35020 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Deletion 35020 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Substitution 35319 68.90 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Insertion 35012 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Deletion 35012 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Substitution 38516 37.90 29.00 27.59 1.41 After
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Insertion 38516 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Deletion 38516 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Substitution 35172 93.08 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Insertion 34857 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Deletion 34857 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Substitution 35046 64.75 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Insertion 34745 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Deletion 34745 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Substitution 35005 55.67 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Insertion 34683 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Deletion 34683 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Substitution 34927 75.60 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Insertion 34582 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Deletion 34582 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Substitution 35001 66.29 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Insertion 34612 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Deletion 34612 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Substitution 34859 62.99 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Insertion 34499 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Deletion 34499 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Substitution 34799 65.67 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Insertion 34434 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Deletion 34434 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Substitution 34828 77.61 26.00 26.61 -0.61 After
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Insertion 34467 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Deletion 34467 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Substitution 34596 70.61 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Insertion 34231 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Deletion 34231 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Substitution 34466 75.62 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Insertion 34090 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Deletion 34090 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Substitution 38440 42.12 29.00 27.53 1.47 After
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Insertion 38440 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Deletion 38440 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Substitution 34385 64.63 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Insertion 34013 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Deletion 34013 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Substitution 34387 66.52 27.00 26.30 0.70 After
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Insertion 34025 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Deletion 34025 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Substitution 34300 70.43 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Insertion 33926 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Deletion 33926 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Substitution 34098 74.69 27.00 26.30 0.70 After
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Insertion 33747 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Deletion 33747 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Substitution 34089 75.12 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Insertion 33736 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Deletion 33736 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Substitution 33856 56.87 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Insertion 33490 5.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Deletion 33490 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Substitution 33815 85.66 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Insertion 33444 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Deletion 33444 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Substitution 33767 62.32 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Insertion 33404 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Deletion 33404 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Substitution 33636 66.01 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Insertion 33268 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Deletion 33268 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Substitution 33583 73.92 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Insertion 33182 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Deletion 33182 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Substitution 38445 48.32 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Insertion 38445 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Deletion 38445 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Substitution 33439 66.93 27.00 26.32 0.68 After
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Insertion 33062 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Deletion 33062 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Substitution 33461 68.53 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Insertion 33061 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Deletion 33061 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Substitution 33432 58.73 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Insertion 33034 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Deletion 33034 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Substitution 33229 71.55 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Insertion 32869 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Deletion 32869 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Substitution 33165 66.09 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Insertion 32770 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Deletion 32770 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Substitution 33099 78.70 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Insertion 32716 0.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Deletion 32716 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Substitution 32890 55.81 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Insertion 32486 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Deletion 32486 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Substitution 32898 57.95 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Insertion 32499 0.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Deletion 32499 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Substitution 32789 66.43 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Insertion 32389 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Deletion 32389 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Substitution 32753 65.56 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Insertion 32323 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Deletion 32323 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Substitution 38477 48.47 28.00 27.53 0.47 After
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Insertion 38477 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Deletion 38477 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Substitution 32554 63.03 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Insertion 32135 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Deletion 32135 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Substitution 32447 74.52 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Insertion 32035 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Deletion 32035 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Substitution 32368 69.13 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Insertion 31887 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Deletion 31887 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Substitution 32201 60.49 27.00 26.35 0.65 After
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Insertion 31714 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Deletion 31714 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Substitution 32180 60.72 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Insertion 31722 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Deletion 31722 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Substitution 32033 62.59 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Insertion 31519 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Deletion 31519 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Substitution 31836 73.14 26.00 26.13 -0.13 After
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Insertion 31407 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Deletion 31407 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 147 Cycle Base Substitution 31810 76.71 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L006 148 Cycle Base Substitution 31646 77.22 26.00 26.29 -0.29 After
REGRESSION.HCC1395_tumor.L006 149 Cycle Base Substitution 31589 76.16 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Substitution 38384 47.39 28.00 27.94 0.06 After
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Insertion 38384 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Deletion 38384 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 150 Cycle Base Substitution 31494 74.93 26.00 26.43 -0.43 After
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Substitution 38503 35.71 29.00 28.45 0.55 After
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Insertion 38503 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Deletion 38503 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Substitution 38410 33.91 29.00 28.66 0.34 After
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Insertion 38410 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Deletion 38410 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Substitution 38257 24.37 30.00 28.38 1.62 After
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Insertion 38257 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Deletion 38257 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Substitution 38244 31.94 30.00 28.31 1.69 After
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Insertion 38244 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Deletion 38244 4.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 2 Cycle Base Substitution 38500 88.97 27.00 27.47 -0.47 After
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Substitution 38394 40.16 29.00 28.51 0.49 After
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Insertion 38394 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Deletion 38394 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Substitution 38361 34.83 29.00 28.79 0.21 After
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Insertion 38361 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Deletion 38361 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Substitution 38297 25.82 30.00 28.68 1.32 After
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Insertion 38297 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Deletion 38297 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Substitution 38287 15.55 30.00 28.63 1.37 After
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Insertion 38287 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Deletion 38287 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Substitution 38292 21.68 31.00 29.26 1.74 After
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Insertion 38292 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Deletion 38292 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Substitution 38301 31.77 30.00 28.63 1.37 After
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Insertion 38301 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Deletion 38301 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Substitution 38351 32.74 30.00 28.07 1.93 After
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Insertion 38351 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Deletion 38351 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Substitution 38251 35.74 29.00 27.68 1.32 After
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Insertion 38249 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Deletion 38249 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Substitution 38357 50.88 29.00 28.35 0.65 After
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Insertion 38357 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Deletion 38357 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Substitution 38214 45.88 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Insertion 38211 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Deletion 38211 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 3 Cycle Base Substitution 38614 102.72 26.00 27.54 -1.54 After
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Substitution 38328 39.72 29.00 28.28 0.72 After
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Insertion 38323 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Deletion 38323 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Substitution 38380 39.92 29.00 28.57 0.43 After
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Insertion 38377 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Deletion 38377 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Substitution 38078 55.80 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Insertion 38075 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Deletion 38075 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Substitution 38183 33.70 29.00 27.78 1.22 After
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Insertion 38181 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Deletion 38181 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Substitution 38198 37.93 29.00 27.63 1.37 After
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Insertion 38194 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Deletion 38194 4.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Substitution 38177 43.89 29.00 27.67 1.33 After
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Insertion 38173 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Deletion 38173 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Substitution 38250 37.92 29.00 27.93 1.07 After
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Insertion 38246 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Deletion 38246 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Substitution 38212 31.18 30.00 28.01 1.99 After
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Insertion 38208 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Deletion 38208 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Substitution 38220 42.78 29.00 28.21 0.79 After
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Insertion 38217 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Deletion 38217 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Substitution 38169 38.80 29.00 28.03 0.97 After
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Insertion 38168 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Deletion 38168 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 4 Cycle Base Substitution 38636 83.22 27.00 27.05 -0.05 After
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Substitution 38084 32.82 30.00 28.14 1.86 After
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Insertion 38081 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Deletion 38081 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Substitution 38238 36.24 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Insertion 38234 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Deletion 38234 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Substitution 38018 40.36 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Insertion 38015 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Deletion 38015 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Substitution 38117 53.25 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Insertion 38115 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Deletion 38115 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Substitution 38136 44.18 29.00 27.71 1.29 After
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Insertion 38136 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Deletion 38136 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Substitution 38073 45.54 28.00 27.83 0.17 After
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Insertion 38069 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Deletion 38069 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Substitution 38099 45.62 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Insertion 38092 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Deletion 38092 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Substitution 38143 42.42 29.00 27.82 1.18 After
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Insertion 38134 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Deletion 38134 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Substitution 38070 40.99 29.00 27.75 1.25 After
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Insertion 38060 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Deletion 38060 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Substitution 38135 39.76 29.00 27.64 1.36 After
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Insertion 38128 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Deletion 38128 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Substitution 38521 40.52 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Insertion 38521 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Deletion 38521 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Substitution 38005 31.61 30.00 28.13 1.87 After
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Insertion 37994 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Deletion 37994 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Substitution 38007 65.34 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Insertion 37993 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Deletion 37993 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Substitution 38037 43.59 29.00 27.64 1.36 After
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Insertion 38017 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Deletion 38017 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Substitution 38136 44.64 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Insertion 38109 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Deletion 38109 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Substitution 37968 41.46 29.00 27.85 1.15 After
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Insertion 37937 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Deletion 37937 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Substitution 38007 37.43 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Insertion 37975 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Deletion 37975 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Substitution 38135 63.51 28.00 27.54 0.46 After
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Insertion 38094 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Deletion 38094 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Substitution 37894 54.63 28.00 27.83 0.17 After
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Insertion 37858 2.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Deletion 37858 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Substitution 37918 37.64 29.00 27.81 1.19 After
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Insertion 37879 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Deletion 37879 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Substitution 38019 49.38 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Insertion 37964 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Deletion 37964 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Substitution 38631 41.63 29.00 28.09 0.91 After
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Insertion 38631 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Deletion 38631 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Substitution 37845 49.16 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Insertion 37782 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Deletion 37782 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Substitution 37925 58.09 28.00 27.85 0.15 After
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Insertion 37851 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Deletion 37851 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Substitution 37922 47.14 29.00 28.17 0.83 After
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Insertion 37846 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Deletion 37846 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Substitution 37848 57.01 28.00 27.30 0.70 After
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Insertion 37770 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Deletion 37770 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Substitution 37871 40.44 29.00 27.66 1.34 After
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Insertion 37788 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Deletion 37788 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Substitution 37784 53.31 28.00 27.53 0.47 After
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Insertion 37710 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Deletion 37710 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Substitution 37758 37.30 29.00 28.19 0.81 After
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Insertion 37666 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Deletion 37666 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Substitution 37724 62.13 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Insertion 37631 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Deletion 37631 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Substitution 37723 44.49 28.00 27.37 0.63 After
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Insertion 37625 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Deletion 37625 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Substitution 37852 39.53 29.00 27.44 1.56 After
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Insertion 37750 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Deletion 37750 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Substitution 38397 39.20 29.00 27.57 1.43 After
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Insertion 38397 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Deletion 38397 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Substitution 37543 45.38 28.00 27.38 0.62 After
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Insertion 37438 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Deletion 37438 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Substitution 37576 49.36 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Insertion 37453 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Deletion 37453 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Substitution 37535 40.59 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Insertion 37410 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Deletion 37410 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Substitution 37549 54.30 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Insertion 37410 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Deletion 37410 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Substitution 37437 46.32 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Insertion 37292 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Deletion 37292 4.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Substitution 37459 52.60 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Insertion 37314 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Deletion 37314 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Substitution 37435 55.16 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Insertion 37280 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Deletion 37280 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Substitution 37341 55.97 28.00 27.28 0.72 After
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Insertion 37188 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Deletion 37188 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Substitution 37328 58.81 28.00 27.23 0.77 After
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Insertion 37155 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Deletion 37155 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Substitution 37337 68.07 27.00 27.27 -0.27 After
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Insertion 37162 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Deletion 37162 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Substitution 38428 55.80 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Insertion 38428 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Deletion 38428 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Substitution 37345 49.09 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Insertion 37153 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Deletion 37153 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Substitution 37124 54.09 28.00 27.29 0.71 After
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Insertion 36919 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Deletion 36919 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Substitution 37157 53.60 28.00 27.34 0.66 After
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Insertion 36947 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Deletion 36947 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Substitution 37079 51.88 28.00 27.15 0.85 After
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Insertion 36844 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Deletion 36844 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Substitution 37154 60.77 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Insertion 36920 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Deletion 36920 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Substitution 36973 66.83 27.00 27.15 -0.15 After
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Insertion 36749 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Deletion 36749 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Substitution 36981 69.01 27.00 27.26 -0.26 After
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Insertion 36767 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Deletion 36767 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Substitution 36897 48.20 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Insertion 36669 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Deletion 36669 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Substitution 36758 63.27 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Insertion 36519 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Deletion 36519 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Substitution 36811 66.36 27.00 27.03 -0.03 After
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Insertion 36565 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Deletion 36565 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Substitution 38496 52.47 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Insertion 38496 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Deletion 38496 2.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Substitution 36803 61.49 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Insertion 36553 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Deletion 36553 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Substitution 36795 65.74 27.00 27.07 -0.07 After
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Insertion 36542 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Deletion 36542 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Substitution 36536 63.96 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Insertion 36254 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Deletion 36254 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Substitution 36352 64.56 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Insertion 36073 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Deletion 36073 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Substitution 36469 71.13 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Insertion 36181 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Deletion 36181 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Substitution 36273 50.77 28.00 27.20 0.80 After
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Insertion 35961 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Deletion 35961 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Substitution 36231 58.18 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Insertion 35927 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Deletion 35927 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Substitution 36235 56.12 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Insertion 35936 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Deletion 35936 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Substitution 36128 66.13 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Insertion 35835 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Deletion 35835 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Substitution 36054 62.34 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Insertion 35765 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Deletion 35765 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 10 QualityScore Base Substitution 14608 1588.82 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L006 11 QualityScore Base Substitution 14300 1017.54 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L006 12 QualityScore Base Substitution 21797 1264.48 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L006 13 QualityScore Base Substitution 13125 248.15 16.00 13.00 3.00 After
REGRESSION.HCC1395_tumor.L006 14 QualityScore Base Substitution 10582 159.70 17.00 14.00 3.00 After
REGRESSION.HCC1395_tumor.L006 15 QualityScore Base Substitution 19019 8.48 22.00 15.00 7.00 After
REGRESSION.HCC1395_tumor.L006 16 QualityScore Base Substitution 5871 0.29 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L006 17 QualityScore Base Substitution 14223 2.64 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L006 22 QualityScore Base Substitution 10163 5.83 24.00 22.00 2.00 After
REGRESSION.HCC1395_tumor.L006 23 QualityScore Base Substitution 36513 225.36 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 24 QualityScore Base Substitution 129402 638.95 23.00 24.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 25 QualityScore Base Substitution 63242 209.57 25.00 25.00 0.00 After
REGRESSION.HCC1395_tumor.L006 26 QualityScore Base Substitution 101856 150.81 28.00 26.00 2.00 After
REGRESSION.HCC1395_tumor.L006 28 QualityScore Base Substitution 10048 0.89 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L006 29 QualityScore Base Substitution 70172 134.88 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 30 QualityScore Base Substitution 3161494 1873.68 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L006 31 QualityScore Base Substitution 2181337 824.22 34.00 31.00 3.00 After
REGRESSION.HCC1395_tumor.L006 32 QualityScore Base Substitution 4530810 1056.51 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L006 33 QualityScore Base Substitution 430111 62.65 36.00 33.00 3.00 After
REGRESSION.HCC1395_tumor.L006 45 QualityScore Base Insertion 10904356 489.19 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 45 QualityScore Base Deletion 10904356 977.80 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L006 8 QualityScore Base Substitution 1614 282.57 8.00 8.00 0.00 After
REGRESSION.HCC1395_tumor.L006 9 QualityScore Base Substitution 64069 8553.21 9.00 9.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AA Context Base Substitution 825444 1789.05 27.00 25.59 1.41 After
REGRESSION.HCC1395_tumor.L007 AAA Context Base Insertion 292857 57.64 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L007 AAA Context Base Deletion 292857 188.46 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L007 AAC Context Base Insertion 131145 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AAC Context Base Deletion 131145 8.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AAG Context Base Insertion 195507 4.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AAG Context Base Deletion 195507 9.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AAT Context Base Insertion 172172 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AAT Context Base Deletion 172172 15.66 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 AC Context Base Substitution 528153 1863.82 25.00 24.70 0.30 After
REGRESSION.HCC1395_tumor.L007 ACA Context Base Insertion 203172 17.81 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 ACA Context Base Deletion 203172 36.16 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L007 ACC Context Base Insertion 145992 7.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ACC Context Base Deletion 145992 4.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ACG Context Base Insertion 30606 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ACG Context Base Deletion 30606 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ACT Context Base Insertion 157301 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ACT Context Base Deletion 157301 12.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AG Context Base Substitution 792395 640.00 31.00 28.76 2.24 After
REGRESSION.HCC1395_tumor.L007 AGA Context Base Insertion 219838 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGA Context Base Deletion 219838 10.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGC Context Base Insertion 190468 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGC Context Base Deletion 190468 9.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGG Context Base Insertion 225722 9.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGG Context Base Deletion 225722 7.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGT Context Base Insertion 152816 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGT Context Base Deletion 152816 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AT Context Base Substitution 597436 599.75 30.00 27.61 2.39 After
REGRESSION.HCC1395_tumor.L007 ATA Context Base Insertion 133244 6.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATA Context Base Deletion 133244 6.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATC Context Base Insertion 119996 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATC Context Base Deletion 119996 9.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATG Context Base Insertion 173260 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATG Context Base Deletion 173260 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATT Context Base Insertion 181883 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATT Context Base Deletion 181883 8.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CA Context Base Substitution 850025 1802.06 27.00 25.76 1.24 After
REGRESSION.HCC1395_tumor.L007 CAA Context Base Insertion 169671 5.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CAA Context Base Deletion 169671 11.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CAC Context Base Insertion 182277 20.92 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 CAC Context Base Deletion 182277 33.92 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L007 CAG Context Base Insertion 289988 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CAG Context Base Deletion 289988 11.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CAT Context Base Insertion 169466 7.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CAT Context Base Deletion 169466 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CC Context Base Substitution 759900 2360.85 25.00 24.67 0.33 After
REGRESSION.HCC1395_tumor.L007 CCA Context Base Insertion 243063 5.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCA Context Base Deletion 243063 7.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCC Context Base Insertion 210183 10.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCC Context Base Deletion 210183 18.51 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 CCG Context Base Insertion 53913 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCG Context Base Deletion 53913 6.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCT Context Base Insertion 242020 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCT Context Base Deletion 242020 9.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CG Context Base Substitution 160702 521.27 25.00 24.96 0.04 After
REGRESSION.HCC1395_tumor.L007 CGA Context Base Insertion 56137 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGA Context Base Deletion 56137 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGC Context Base Insertion 80706 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGC Context Base Deletion 80706 9.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGG Context Base Insertion 98187 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGG Context Base Deletion 98187 8.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGT Context Base Insertion 62497 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGT Context Base Deletion 62497 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CT Context Base Substitution 834813 363.24 33.00 29.69 3.31 After
REGRESSION.HCC1395_tumor.L007 CTA Context Base Insertion 95740 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTA Context Base Deletion 95740 6.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTC Context Base Insertion 201695 6.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTC Context Base Deletion 201695 21.22 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 CTG Context Base Insertion 290977 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTG Context Base Deletion 290977 14.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTT Context Base Insertion 208291 8.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTT Context Base Deletion 208291 10.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GA Context Base Substitution 697788 1027.28 28.00 26.56 1.44 After
REGRESSION.HCC1395_tumor.L007 GAA Context Base Insertion 207369 4.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAA Context Base Deletion 207369 8.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAC Context Base Insertion 117953 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAC Context Base Deletion 117953 5.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAG Context Base Insertion 205092 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAG Context Base Deletion 205092 10.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAT Context Base Insertion 124787 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAT Context Base Deletion 124787 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GC Context Base Substitution 658492 1468.72 26.00 25.99 0.01 After
REGRESSION.HCC1395_tumor.L007 GCA Context Base Insertion 202749 5.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCA Context Base Deletion 202749 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCC Context Base Insertion 197893 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCC Context Base Deletion 197893 12.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCG Context Base Insertion 49184 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCG Context Base Deletion 49184 7.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCT Context Base Insertion 208536 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCT Context Base Deletion 208536 5.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GG Context Base Substitution 785979 756.42 30.00 27.73 2.27 After
REGRESSION.HCC1395_tumor.L007 GGA Context Base Insertion 213211 18.35 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 GGA Context Base Deletion 213211 16.15 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 GGC Context Base Insertion 194842 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GGC Context Base Deletion 194842 6.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GGG Context Base Insertion 217429 14.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GGG Context Base Deletion 217429 29.96 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 GGT Context Base Insertion 157790 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GGT Context Base Deletion 157790 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GT Context Base Substitution 585646 965.45 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L007 GTA Context Base Insertion 100750 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GTA Context Base Deletion 100750 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GTC Context Base Insertion 125799 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GTC Context Base Deletion 125799 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GTG Context Base Insertion 198837 16.76 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 GTG Context Base Deletion 198837 31.08 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 GTT Context Base Insertion 147811 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GTT Context Base Deletion 147811 11.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TA Context Base Substitution 479827 1195.75 26.00 25.01 0.99 After
REGRESSION.HCC1395_tumor.L007 TAA Context Base Insertion 148628 11.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAA Context Base Deletion 148628 13.76 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 TAC Context Base Insertion 93356 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAC Context Base Deletion 93356 5.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAG Context Base Insertion 95873 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAG Context Base Deletion 95873 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAT Context Base Insertion 126635 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAT Context Base Deletion 126635 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TC Context Base Substitution 644321 1631.86 26.00 26.15 -0.15 After
REGRESSION.HCC1395_tumor.L007 TCA Context Base Insertion 194467 6.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCA Context Base Deletion 194467 14.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCC Context Base Insertion 200791 25.86 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 TCC Context Base Deletion 200791 8.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCG Context Base Insertion 25833 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCG Context Base Deletion 25833 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCT Context Base Insertion 221313 5.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCT Context Base Deletion 221313 18.90 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 TG Context Base Substitution 838105 356.69 33.00 29.45 3.55 After
REGRESSION.HCC1395_tumor.L007 TGA Context Base Insertion 203238 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGA Context Base Deletion 203238 4.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGC Context Base Insertion 188339 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGC Context Base Deletion 188339 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGG Context Base Insertion 238758 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGG Context Base Deletion 238758 6.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGT Context Base Insertion 208636 16.63 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 TGT Context Base Deletion 208636 33.28 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 TT Context Base Substitution 836539 904.76 30.00 28.31 1.69 After
REGRESSION.HCC1395_tumor.L007 TTA Context Base Insertion 146516 8.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTA Context Base Deletion 146516 7.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTC Context Base Insertion 193011 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTC Context Base Deletion 193011 10.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTG Context Base Insertion 169082 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTG Context Base Deletion 169082 8.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTT Context Base Insertion 292954 40.61 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L007 TTT Context Base Deletion 292954 175.84 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L007 -1 Cycle Base Substitution 38294 165.34 24.00 23.53 0.47 After
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Substitution 38670 54.49 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Insertion 38669 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Deletion 38669 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Substitution 36175 74.05 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Insertion 35874 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Deletion 35874 4.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Substitution 36010 79.61 26.00 26.38 -0.38 After
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Insertion 35705 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Deletion 35705 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Substitution 36062 64.52 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Insertion 35744 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Deletion 35744 4.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Substitution 35923 69.60 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Insertion 35628 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Deletion 35628 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Substitution 35980 71.89 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Insertion 35643 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Deletion 35643 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Substitution 35745 80.29 26.00 26.40 -0.40 After
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Insertion 35398 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Deletion 35398 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Substitution 35697 71.47 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Insertion 35331 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Deletion 35331 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Substitution 35636 66.85 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Insertion 35267 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Deletion 35267 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Substitution 35578 68.42 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Insertion 35232 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Deletion 35232 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Substitution 35430 91.09 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Insertion 35080 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Deletion 35080 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Substitution 38509 53.59 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Insertion 38508 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Deletion 38508 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Substitution 35339 63.71 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Insertion 35008 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Deletion 35008 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Substitution 35175 61.91 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Insertion 34852 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Deletion 34852 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Substitution 35232 90.42 26.00 26.15 -0.15 After
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Insertion 34895 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Deletion 34895 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Substitution 35093 92.55 26.00 26.33 -0.33 After
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Insertion 34751 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Deletion 34751 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Substitution 35012 93.02 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Insertion 34657 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Deletion 34657 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Substitution 34889 87.03 26.00 25.61 0.39 After
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Insertion 34511 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Deletion 34511 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Substitution 34752 80.73 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Insertion 34367 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Deletion 34367 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Substitution 34601 79.28 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Insertion 34234 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Deletion 34234 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Substitution 34601 83.73 26.00 26.23 -0.23 After
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Insertion 34222 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Deletion 34222 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Substitution 34460 103.46 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Insertion 34107 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Deletion 34107 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Substitution 38672 56.41 28.00 27.91 0.09 After
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Insertion 38671 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Deletion 38671 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Substitution 34337 94.72 26.00 25.66 0.34 After
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Insertion 33973 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Deletion 33973 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Substitution 34114 88.15 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Insertion 33745 0.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Deletion 33745 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Substitution 34254 66.78 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Insertion 33884 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Deletion 33884 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Substitution 34230 69.77 27.00 26.32 0.68 After
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Insertion 33839 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Deletion 33839 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Substitution 34084 72.83 27.00 26.14 0.86 After
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Insertion 33694 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Deletion 33694 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Substitution 33943 69.53 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Insertion 33565 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Deletion 33565 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Substitution 33866 74.07 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Insertion 33494 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Deletion 33494 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Substitution 33729 71.75 27.00 26.27 0.73 After
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Insertion 33343 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Deletion 33343 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Substitution 33740 81.84 26.00 26.16 -0.16 After
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Insertion 33353 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Deletion 33353 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Substitution 33572 66.28 27.00 26.24 0.76 After
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Insertion 33172 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Deletion 33172 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Substitution 38472 52.59 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Insertion 38471 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Deletion 38471 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Substitution 33513 99.33 26.00 26.04 -0.04 After
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Insertion 33102 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Deletion 33102 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Substitution 33534 86.91 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Insertion 33110 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Deletion 33110 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Substitution 33285 73.50 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Insertion 32853 0.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Deletion 32853 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Substitution 33275 72.74 26.00 25.98 0.02 After
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Insertion 32858 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Deletion 32858 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Substitution 33173 76.42 26.00 26.12 -0.12 After
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Insertion 32730 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Deletion 32730 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Substitution 33031 79.13 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Insertion 32606 0.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Deletion 32606 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Substitution 32906 72.79 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Insertion 32466 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Deletion 32466 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Substitution 32825 74.90 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Insertion 32373 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Deletion 32373 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Substitution 32738 72.74 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Insertion 32296 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Deletion 32296 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Substitution 32523 62.40 27.00 26.26 0.74 After
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Insertion 32053 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Deletion 32053 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Substitution 38560 74.36 27.00 27.05 -0.05 After
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Insertion 38560 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Deletion 38560 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Substitution 32507 70.40 27.00 26.25 0.75 After
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Insertion 32025 0.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Deletion 32025 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Substitution 32452 54.36 27.00 26.25 0.75 After
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Insertion 31956 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Deletion 31956 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Substitution 32215 67.43 27.00 26.25 0.75 After
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Insertion 31657 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Deletion 31657 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Substitution 32134 43.75 28.00 26.22 1.78 After
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Insertion 31531 0.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Deletion 31531 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Substitution 32070 37.39 28.00 26.78 1.22 After
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Insertion 31396 0.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Deletion 31396 0.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Substitution 31939 48.10 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Insertion 24753 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Deletion 24753 0.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Substitution 31633 21.95 28.00 26.31 1.69 After
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Insertion 24572 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Deletion 24572 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -147 Cycle Base Substitution 31611 18.80 27.00 23.03 3.97 After
REGRESSION.HCC1395_tumor.L007 -148 Cycle Base Substitution 31365 25.15 24.00 16.11 7.89 After
REGRESSION.HCC1395_tumor.L007 -149 Cycle Base Substitution 19496 29.11 21.00 14.19 6.81 After
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Substitution 38593 56.71 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Insertion 38593 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Deletion 38593 2.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -150 Cycle Base Substitution 6861 8.85 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Substitution 38670 56.96 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Insertion 38670 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Deletion 38670 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Substitution 38570 65.54 28.00 27.72 0.28 After
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Insertion 38570 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Deletion 38570 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Substitution 38591 57.99 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Insertion 38591 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Deletion 38591 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Substitution 38652 53.49 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Insertion 38652 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Deletion 38652 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -2 Cycle Base Substitution 38576 115.92 25.00 25.78 -0.78 After
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Substitution 38600 54.12 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Insertion 38600 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Deletion 38600 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Substitution 38490 47.13 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Insertion 38489 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Deletion 38489 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Substitution 38516 45.71 28.00 27.72 0.28 After
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Insertion 38515 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Deletion 38515 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Substitution 38610 52.87 28.00 27.73 0.27 After
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Insertion 38609 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Deletion 38609 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Substitution 38458 54.82 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Insertion 38458 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Deletion 38458 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Substitution 38488 62.07 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Insertion 38488 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Deletion 38488 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Substitution 38411 56.14 28.00 26.57 1.43 After
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Insertion 38411 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Deletion 38411 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Substitution 38441 49.25 28.00 26.58 1.42 After
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Insertion 38439 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Deletion 38439 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Substitution 38353 69.44 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Insertion 38349 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Deletion 38349 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Substitution 38583 50.49 28.00 26.56 1.44 After
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Insertion 38579 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Deletion 38579 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -3 Cycle Base Substitution 38759 127.32 25.00 26.38 -1.38 After
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Substitution 38437 54.49 28.00 26.63 1.37 After
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Insertion 38430 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Deletion 38430 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Substitution 38346 76.33 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Insertion 38339 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Deletion 38339 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Substitution 38431 40.20 28.00 26.77 1.23 After
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Insertion 38426 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Deletion 38426 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Substitution 38437 69.06 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Insertion 38432 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Deletion 38432 4.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Substitution 38359 42.35 28.00 26.69 1.31 After
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Insertion 38356 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Deletion 38356 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Substitution 38438 61.53 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Insertion 38436 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Deletion 38436 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Substitution 38498 51.68 28.00 26.54 1.46 After
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Insertion 38494 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Deletion 38494 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Substitution 38368 55.34 28.00 27.05 0.95 After
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Insertion 38364 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Deletion 38364 5.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Substitution 38271 64.15 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Insertion 38265 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Deletion 38265 5.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Substitution 38349 55.90 28.00 26.76 1.24 After
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Insertion 38344 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Deletion 38344 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -4 Cycle Base Substitution 38657 99.06 26.00 26.12 -0.12 After
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Substitution 38284 44.03 29.00 27.12 1.88 After
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Insertion 38280 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Deletion 38280 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Substitution 38388 42.65 29.00 27.17 1.83 After
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Insertion 38382 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Deletion 38382 5.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Substitution 38439 47.27 28.00 26.71 1.29 After
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Insertion 38431 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Deletion 38431 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Substitution 38294 67.83 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Insertion 38283 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Deletion 38283 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Substitution 38427 46.12 28.00 26.82 1.18 After
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Insertion 38421 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Deletion 38421 4.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Substitution 38343 56.97 28.00 26.62 1.38 After
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Insertion 38333 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Deletion 38333 4.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Substitution 38328 51.10 28.00 26.55 1.45 After
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Insertion 38320 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Deletion 38320 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Substitution 38312 59.03 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Insertion 38300 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Deletion 38300 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Substitution 38319 64.70 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Insertion 38305 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Deletion 38305 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Substitution 38177 49.59 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Insertion 38164 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Deletion 38164 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Substitution 38765 56.38 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Insertion 38764 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Deletion 38764 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Substitution 38254 59.25 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Insertion 38232 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Deletion 38232 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Substitution 38230 56.55 28.00 26.73 1.27 After
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Insertion 38202 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Deletion 38202 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Substitution 38077 56.45 28.00 26.70 1.30 After
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Insertion 38046 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Deletion 38046 4.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Substitution 38132 65.39 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Insertion 38101 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Deletion 38101 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Substitution 38210 69.27 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Insertion 38174 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Deletion 38174 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Substitution 38270 56.74 28.00 26.80 1.20 After
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Insertion 38225 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Deletion 38225 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Substitution 38255 63.23 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Insertion 38215 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Deletion 38215 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Substitution 38080 59.43 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Insertion 38018 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Deletion 38018 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Substitution 38064 67.07 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Insertion 38009 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Deletion 38009 5.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Substitution 38144 67.28 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Insertion 38091 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Deletion 38091 4.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Substitution 38659 62.56 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Insertion 38658 0.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Deletion 38658 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Substitution 38062 79.85 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Insertion 37993 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Deletion 37993 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Substitution 37957 52.52 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Insertion 37902 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Deletion 37902 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Substitution 37983 58.78 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Insertion 37923 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Deletion 37923 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Substitution 37902 49.85 28.00 26.82 1.18 After
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Insertion 37842 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Deletion 37842 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Substitution 37880 60.80 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Insertion 37814 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Deletion 37814 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Substitution 37855 65.85 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Insertion 37765 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Deletion 37765 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Substitution 37980 60.87 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Insertion 37887 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Deletion 37887 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Substitution 38002 69.22 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Insertion 37903 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Deletion 37903 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Substitution 37930 61.75 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Insertion 37824 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Deletion 37824 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Substitution 37871 70.07 27.00 27.14 -0.14 After
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Insertion 37768 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Deletion 37768 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Substitution 38563 71.63 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Insertion 38563 0.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Deletion 38563 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Substitution 37761 52.91 28.00 26.66 1.34 After
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Insertion 37648 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Deletion 37648 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Substitution 37707 66.61 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Insertion 37605 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Deletion 37605 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Substitution 37668 78.35 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Insertion 37542 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Deletion 37542 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Substitution 37794 79.85 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Insertion 37651 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Deletion 37651 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Substitution 37577 67.19 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Insertion 37428 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Deletion 37428 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Substitution 37689 73.06 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Insertion 37539 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Deletion 37539 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Substitution 37595 74.94 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Insertion 37451 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Deletion 37451 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Substitution 37559 71.47 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Insertion 37418 0.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Deletion 37418 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Substitution 37431 71.23 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Insertion 37274 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Deletion 37274 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Substitution 37454 81.78 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Insertion 37284 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Deletion 37284 6.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Substitution 38722 49.89 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Insertion 38722 0.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Deletion 38722 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Substitution 37399 63.93 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Insertion 37215 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Deletion 37215 5.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Substitution 37347 67.43 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Insertion 37157 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Deletion 37157 4.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Substitution 37291 59.52 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Insertion 37069 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Deletion 37069 5.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Substitution 37314 68.60 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Insertion 37104 0.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Deletion 37104 5.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Substitution 37166 87.43 26.00 26.67 -0.67 After
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Insertion 36952 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Deletion 36952 4.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Substitution 37253 78.34 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Insertion 37039 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Deletion 37039 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Substitution 37234 64.02 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Insertion 37032 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Deletion 37032 4.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Substitution 36979 80.95 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Insertion 36766 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Deletion 36766 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Substitution 37062 74.39 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Insertion 36828 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Deletion 36828 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Substitution 37111 82.12 27.00 26.10 0.90 After
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Insertion 36860 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Deletion 36860 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Substitution 38581 61.23 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Insertion 38581 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Deletion 38581 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Substitution 37007 81.53 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Insertion 36737 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Deletion 36737 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Substitution 36813 71.36 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Insertion 36519 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Deletion 36519 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Substitution 36748 70.11 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Insertion 36464 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Deletion 36464 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Substitution 36688 69.48 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Insertion 36398 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Deletion 36398 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Substitution 36683 65.04 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Insertion 36421 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Deletion 36421 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Substitution 36559 69.15 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Insertion 36299 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Deletion 36299 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Substitution 36623 82.29 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Insertion 36357 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Deletion 36357 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Substitution 36445 82.19 26.00 26.45 -0.45 After
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Insertion 36188 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Deletion 36188 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Substitution 36254 61.94 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Insertion 35977 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Deletion 35977 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Substitution 36283 75.72 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Insertion 35988 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Deletion 35988 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 1 Cycle Base Substitution 38245 90.20 26.00 26.05 -0.05 After
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Substitution 38735 46.93 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Insertion 38735 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Deletion 38735 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Substitution 36243 58.95 28.00 27.29 0.71 After
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Insertion 35945 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Deletion 35945 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Substitution 36187 60.76 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Insertion 35881 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Deletion 35881 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Substitution 36140 59.75 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Insertion 35831 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Deletion 35831 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Substitution 36029 62.76 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Insertion 35718 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Deletion 35718 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Substitution 36020 64.64 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Insertion 35692 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Deletion 35692 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Substitution 35886 51.08 28.00 26.81 1.19 After
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Insertion 35558 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Deletion 35558 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Substitution 35784 71.60 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Insertion 35443 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Deletion 35443 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Substitution 35667 77.50 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Insertion 35308 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Deletion 35308 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Substitution 35630 77.96 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Insertion 35289 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Deletion 35289 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Substitution 35495 66.11 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Insertion 35155 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Deletion 35155 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Substitution 38731 44.80 29.00 27.67 1.33 After
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Insertion 38731 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Deletion 38731 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Substitution 35265 60.66 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Insertion 34948 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Deletion 34948 4.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Substitution 35329 55.60 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Insertion 35017 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Deletion 35017 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Substitution 35202 73.22 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Insertion 34872 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Deletion 34872 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Substitution 35259 57.46 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Insertion 34916 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Deletion 34916 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Substitution 35040 71.35 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Insertion 34706 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Deletion 34706 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Substitution 35057 67.14 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Insertion 34687 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Deletion 34687 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Substitution 34949 65.63 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Insertion 34575 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Deletion 34575 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Substitution 34754 60.90 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Insertion 34381 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Deletion 34381 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Substitution 34767 76.20 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Insertion 34398 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Deletion 34398 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Substitution 34816 72.42 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Insertion 34458 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Deletion 34458 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Substitution 38612 47.91 29.00 28.07 0.93 After
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Insertion 38612 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Deletion 38612 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Substitution 34637 70.63 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Insertion 34275 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Deletion 34275 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Substitution 34450 61.23 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Insertion 34075 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Deletion 34075 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Substitution 34499 83.27 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Insertion 34137 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Deletion 34137 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Substitution 34364 61.55 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Insertion 33995 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Deletion 33995 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Substitution 34181 63.54 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Insertion 33819 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Deletion 33819 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Substitution 34174 73.95 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Insertion 33796 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Deletion 33796 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Substitution 34060 54.67 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Insertion 33704 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Deletion 33704 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Substitution 33928 76.52 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Insertion 33555 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Deletion 33555 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Substitution 33718 82.00 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Insertion 33357 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Deletion 33357 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Substitution 33689 81.17 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Insertion 33318 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Deletion 33318 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Substitution 38615 46.90 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Insertion 38615 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Deletion 38615 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Substitution 33640 70.03 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Insertion 33248 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Deletion 33248 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Substitution 33634 75.27 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Insertion 33212 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Deletion 33212 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Substitution 33586 71.67 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Insertion 33174 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Deletion 33174 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Substitution 33322 70.33 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Insertion 32912 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Deletion 32912 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Substitution 33269 67.05 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Insertion 32874 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Deletion 32874 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Substitution 33174 76.64 26.00 26.33 -0.33 After
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Insertion 32793 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Deletion 32793 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Substitution 33011 74.29 26.00 26.54 -0.54 After
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Insertion 32620 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Deletion 32620 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Substitution 33013 84.16 26.00 26.45 -0.45 After
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Insertion 32604 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Deletion 32604 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Substitution 32902 57.36 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Insertion 32516 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Deletion 32516 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Substitution 32920 75.00 26.00 25.76 0.24 After
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Insertion 32498 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Deletion 32498 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Substitution 38606 40.03 29.00 27.67 1.33 After
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Insertion 38606 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Deletion 38606 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Substitution 32802 69.68 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Insertion 32399 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Deletion 32399 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Substitution 32693 70.06 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Insertion 32291 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Deletion 32291 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Substitution 32397 61.09 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Insertion 31942 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Deletion 31942 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Substitution 32482 65.82 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Insertion 32073 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Deletion 32073 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Substitution 32383 76.52 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Insertion 31933 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Deletion 31933 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Substitution 32143 65.86 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Insertion 31660 0.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Deletion 31660 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Substitution 32100 72.41 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Insertion 31664 0.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Deletion 31664 0.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 147 Cycle Base Substitution 31978 79.65 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L007 148 Cycle Base Substitution 31858 98.28 25.00 26.62 -1.62 After
REGRESSION.HCC1395_tumor.L007 149 Cycle Base Substitution 31672 82.79 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Substitution 38501 38.10 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Insertion 38501 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Deletion 38501 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 150 Cycle Base Substitution 31577 74.63 26.00 26.48 -0.48 After
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Substitution 38470 25.91 30.00 28.59 1.41 After
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Insertion 38470 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Deletion 38470 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Substitution 38505 40.08 29.00 28.35 0.65 After
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Insertion 38505 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Deletion 38505 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Substitution 38486 27.12 30.00 28.50 1.50 After
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Insertion 38486 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Deletion 38486 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Substitution 38671 21.10 30.00 28.64 1.36 After
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Insertion 38671 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Deletion 38671 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 2 Cycle Base Substitution 38744 81.97 27.00 27.69 -0.69 After
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Substitution 38648 27.02 30.00 28.50 1.50 After
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Insertion 38648 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Deletion 38648 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Substitution 38545 34.66 29.00 28.52 0.48 After
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Insertion 38545 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Deletion 38545 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Substitution 38495 29.86 30.00 28.64 1.36 After
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Insertion 38495 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Deletion 38495 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Substitution 38471 31.11 30.00 28.74 1.26 After
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Insertion 38471 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Deletion 38471 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Substitution 38353 24.01 30.00 28.48 1.52 After
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Insertion 38353 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Deletion 38353 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Substitution 38348 31.14 30.00 28.68 1.32 After
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Insertion 38348 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Deletion 38348 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Substitution 38477 33.45 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Insertion 38477 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Deletion 38477 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Substitution 38384 43.70 29.00 27.78 1.22 After
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Insertion 38382 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Deletion 38382 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Substitution 38403 37.05 29.00 28.33 0.67 After
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Insertion 38403 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Deletion 38403 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Substitution 38449 36.23 29.00 28.16 0.84 After
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Insertion 38447 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Deletion 38447 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 3 Cycle Base Substitution 38668 105.48 26.00 27.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Substitution 38422 35.42 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Insertion 38420 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Deletion 38420 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Substitution 38448 38.63 29.00 28.02 0.98 After
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Insertion 38446 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Deletion 38446 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Substitution 38405 58.28 28.00 27.92 0.08 After
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Insertion 38402 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Deletion 38402 4.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Substitution 38466 48.56 28.00 27.76 0.24 After
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Insertion 38463 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Deletion 38463 4.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Substitution 38477 45.67 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Insertion 38473 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Deletion 38473 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Substitution 38321 51.24 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Insertion 38319 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Deletion 38319 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Substitution 38384 49.12 28.00 27.90 0.10 After
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Insertion 38381 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Deletion 38381 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Substitution 38465 40.40 29.00 28.30 0.70 After
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Insertion 38462 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Deletion 38462 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Substitution 38368 39.67 29.00 27.82 1.18 After
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Insertion 38364 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Deletion 38364 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Substitution 38263 39.90 29.00 28.18 0.82 After
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Insertion 38259 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Deletion 38259 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 4 Cycle Base Substitution 38726 73.68 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Substitution 38294 48.91 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Insertion 38289 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Deletion 38289 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Substitution 38325 48.48 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Insertion 38321 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Deletion 38321 4.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Substitution 38255 49.60 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Insertion 38249 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Deletion 38249 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Substitution 38272 46.24 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Insertion 38265 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Deletion 38265 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Substitution 38200 45.95 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Insertion 38195 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Deletion 38195 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Substitution 38212 50.01 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Insertion 38204 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Deletion 38204 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Substitution 38347 44.15 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Insertion 38338 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Deletion 38338 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Substitution 38189 53.67 28.00 27.56 0.44 After
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Insertion 38178 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Deletion 38178 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Substitution 38179 46.49 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Insertion 38168 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Deletion 38168 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Substitution 38204 49.98 29.00 28.30 0.70 After
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Insertion 38192 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Deletion 38192 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Substitution 38646 51.57 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Insertion 38646 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Deletion 38646 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Substitution 38231 43.54 29.00 27.78 1.22 After
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Insertion 38214 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Deletion 38214 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Substitution 38189 51.53 28.00 27.96 0.04 After
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Insertion 38167 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Deletion 38167 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Substitution 38182 43.10 29.00 27.50 1.50 After
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Insertion 38151 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Deletion 38151 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Substitution 38106 37.37 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Insertion 38074 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Deletion 38074 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Substitution 38118 46.48 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Insertion 38080 4.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Deletion 38080 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Substitution 38214 44.01 29.00 27.60 1.40 After
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Insertion 38174 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Deletion 38174 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Substitution 38160 41.65 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Insertion 38127 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Deletion 38127 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Substitution 38172 58.68 28.00 27.76 0.24 After
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Insertion 38121 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Deletion 38121 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Substitution 38113 36.45 29.00 27.96 1.04 After
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Insertion 38062 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Deletion 38062 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Substitution 38134 41.02 29.00 27.86 1.14 After
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Insertion 38084 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Deletion 38084 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Substitution 38644 43.12 29.00 27.62 1.38 After
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Insertion 38644 0.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Deletion 38644 0.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Substitution 38065 55.21 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Insertion 38004 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Deletion 38004 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Substitution 38057 50.25 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Insertion 38001 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Deletion 38001 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Substitution 38070 40.79 29.00 28.17 0.83 After
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Insertion 38001 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Deletion 38001 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Substitution 38012 55.60 28.00 27.53 0.47 After
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Insertion 37942 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Deletion 37942 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Substitution 38049 47.67 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Insertion 37976 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Deletion 37976 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Substitution 38145 53.54 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Insertion 38058 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Deletion 38058 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Substitution 37872 63.42 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Insertion 37781 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Deletion 37781 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Substitution 37917 52.51 28.00 27.14 0.86 After
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Insertion 37816 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Deletion 37816 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Substitution 37998 54.79 28.00 27.38 0.62 After
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Insertion 37882 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Deletion 37882 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Substitution 37780 46.91 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Insertion 37673 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Deletion 37673 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Substitution 38497 56.78 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Insertion 38497 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Deletion 38497 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Substitution 37879 56.31 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Insertion 37768 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Deletion 37768 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Substitution 37766 59.88 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Insertion 37647 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Deletion 37647 4.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Substitution 37763 44.75 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Insertion 37634 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Deletion 37634 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Substitution 37698 54.09 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Insertion 37563 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Deletion 37563 5.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Substitution 37665 52.84 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Insertion 37520 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Deletion 37520 5.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Substitution 37694 61.39 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Insertion 37533 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Deletion 37533 4.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Substitution 37640 53.98 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Insertion 37500 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Deletion 37500 5.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Substitution 37575 54.01 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Insertion 37426 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Deletion 37426 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Substitution 37487 43.99 29.00 28.16 0.84 After
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Insertion 37335 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Deletion 37335 4.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Substitution 37373 56.96 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Insertion 37209 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Deletion 37209 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Substitution 38684 58.44 28.00 27.35 0.65 After
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Insertion 38684 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Deletion 38684 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Substitution 37376 69.68 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Insertion 37189 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Deletion 37189 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Substitution 37327 52.28 28.00 27.29 0.71 After
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Insertion 37144 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Deletion 37144 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Substitution 37281 54.17 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Insertion 37072 0.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Deletion 37072 4.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Substitution 37193 60.23 28.00 27.15 0.85 After
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Insertion 36987 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Deletion 36987 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Substitution 37194 66.83 27.00 27.30 -0.30 After
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Insertion 36991 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Deletion 36991 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Substitution 37157 62.53 28.00 27.14 0.86 After
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Insertion 36944 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Deletion 36944 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Substitution 37188 60.89 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Insertion 36979 2.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Deletion 36979 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Substitution 37078 64.42 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Insertion 36863 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Deletion 36863 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Substitution 37153 47.47 28.00 27.15 0.85 After
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Insertion 36926 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Deletion 36926 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Substitution 36877 68.89 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Insertion 36629 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Deletion 36629 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Substitution 38651 45.18 29.00 27.57 1.43 After
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Insertion 38651 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Deletion 38651 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Substitution 36913 58.57 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Insertion 36628 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Deletion 36628 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Substitution 36791 58.63 28.00 27.18 0.82 After
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Insertion 36496 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Deletion 36496 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Substitution 36859 57.54 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Insertion 36572 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Deletion 36572 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Substitution 36761 59.91 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Insertion 36485 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Deletion 36485 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Substitution 36660 56.59 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Insertion 36400 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Deletion 36400 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Substitution 36571 59.89 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Insertion 36310 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Deletion 36310 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Substitution 36515 60.36 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Insertion 36243 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Deletion 36243 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Substitution 36465 64.51 27.00 27.06 -0.06 After
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Insertion 36194 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Deletion 36194 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Substitution 36403 78.42 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Insertion 36125 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Deletion 36125 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Substitution 36249 52.43 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Insertion 35963 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Deletion 35963 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 10 QualityScore Base Substitution 14632 1473.69 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L007 11 QualityScore Base Substitution 14447 1089.69 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L007 12 QualityScore Base Substitution 21601 1223.31 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L007 13 QualityScore Base Substitution 5961 41.67 17.00 13.00 4.00 After
REGRESSION.HCC1395_tumor.L007 14 QualityScore Base Substitution 17628 363.85 16.00 14.00 2.00 After
REGRESSION.HCC1395_tumor.L007 15 QualityScore Base Substitution 17100 13.17 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L007 16 QualityScore Base Substitution 8309 2.84 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L007 17 QualityScore Base Substitution 14178 2.57 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L007 22 QualityScore Base Substitution 297 0.12 22.00 22.00 0.00 After
REGRESSION.HCC1395_tumor.L007 23 QualityScore Base Substitution 99680 628.72 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 24 QualityScore Base Substitution 101552 391.84 24.00 24.00 0.00 After
REGRESSION.HCC1395_tumor.L007 25 QualityScore Base Substitution 140050 208.27 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L007 28 QualityScore Base Substitution 7659 3.73 28.00 28.00 0.00 After
REGRESSION.HCC1395_tumor.L007 29 QualityScore Base Substitution 57779 99.22 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 30 QualityScore Base Substitution 2492682 1578.99 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L007 31 QualityScore Base Substitution 2844746 1244.04 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L007 32 QualityScore Base Substitution 4652811 1073.69 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L007 33 QualityScore Base Substitution 375156 75.45 35.00 33.00 2.00 After
REGRESSION.HCC1395_tumor.L007 45 QualityScore Base Insertion 10952123 435.78 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 45 QualityScore Base Deletion 10952123 992.30 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L007 8 QualityScore Base Substitution 1459 258.41 8.00 8.00 0.00 After
REGRESSION.HCC1395_tumor.L007 9 QualityScore Base Substitution 64396 8729.24 9.00 9.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AA Context Base Substitution 831398 1822.00 27.00 25.48 1.52 After
REGRESSION.HCC1395_tumor.L008 AAA Context Base Insertion 295364 58.93 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L008 AAA Context Base Deletion 295364 195.95 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L008 AAC Context Base Insertion 131279 6.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AAC Context Base Deletion 131279 10.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AAG Context Base Insertion 196934 6.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AAG Context Base Deletion 196934 9.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AAT Context Base Insertion 174256 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AAT Context Base Deletion 174256 14.34 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 AC Context Base Substitution 528754 1907.49 24.00 24.70 -0.70 After
REGRESSION.HCC1395_tumor.L008 ACA Context Base Insertion 203645 19.15 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 ACA Context Base Deletion 203645 34.51 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L008 ACC Context Base Insertion 146082 6.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ACC Context Base Deletion 146082 6.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ACG Context Base Insertion 30673 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ACG Context Base Deletion 30673 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ACT Context Base Insertion 156989 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ACT Context Base Deletion 156989 13.74 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 AG Context Base Substitution 794831 619.31 31.00 28.68 2.32 After
REGRESSION.HCC1395_tumor.L008 AGA Context Base Insertion 220466 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGA Context Base Deletion 220466 13.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGC Context Base Insertion 191152 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGC Context Base Deletion 191152 6.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGG Context Base Insertion 225693 14.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGG Context Base Deletion 225693 7.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGT Context Base Insertion 154005 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGT Context Base Deletion 154005 6.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AT Context Base Substitution 601661 639.33 30.00 27.61 2.39 After
REGRESSION.HCC1395_tumor.L008 ATA Context Base Insertion 135161 10.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATA Context Base Deletion 135161 7.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATC Context Base Insertion 120639 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATC Context Base Deletion 120639 6.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATG Context Base Insertion 174057 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATG Context Base Deletion 174057 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATT Context Base Insertion 182598 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATT Context Base Deletion 182598 7.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CA Context Base Substitution 852318 1806.54 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L008 CAA Context Base Insertion 171301 5.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CAA Context Base Deletion 171301 14.65 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 CAC Context Base Insertion 183202 22.00 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 CAC Context Base Deletion 183202 33.31 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 CAG Context Base Insertion 289765 7.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CAG Context Base Deletion 289765 12.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CAT Context Base Insertion 169787 6.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CAT Context Base Deletion 169787 6.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CC Context Base Substitution 762944 2431.74 25.00 24.58 0.42 After
REGRESSION.HCC1395_tumor.L008 CCA Context Base Insertion 244622 6.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCA Context Base Deletion 244622 7.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCC Context Base Insertion 211880 12.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCC Context Base Deletion 211880 16.43 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 CCG Context Base Insertion 53524 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCG Context Base Deletion 53524 5.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCT Context Base Insertion 242426 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCT Context Base Deletion 242426 9.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CG Context Base Substitution 160744 526.69 25.00 24.84 0.16 After
REGRESSION.HCC1395_tumor.L008 CGA Context Base Insertion 55797 4.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGA Context Base Deletion 55797 0.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGC Context Base Insertion 80153 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGC Context Base Deletion 80153 5.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGG Context Base Insertion 96991 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGG Context Base Deletion 96991 6.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGT Context Base Insertion 62762 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGT Context Base Deletion 62762 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CT Context Base Substitution 836482 413.10 33.00 29.34 3.66 After
REGRESSION.HCC1395_tumor.L008 CTA Context Base Insertion 96160 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTA Context Base Deletion 96160 6.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTC Context Base Insertion 201346 6.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTC Context Base Deletion 201346 17.30 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 CTG Context Base Insertion 291107 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTG Context Base Deletion 291107 13.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTT Context Base Insertion 209522 8.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTT Context Base Deletion 209522 9.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GA Context Base Substitution 697695 1028.91 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L008 GAA Context Base Insertion 207542 6.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAA Context Base Deletion 207542 9.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAC Context Base Insertion 117742 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAC Context Base Deletion 117742 7.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAG Context Base Insertion 205758 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAG Context Base Deletion 205758 12.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAT Context Base Insertion 124420 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAT Context Base Deletion 124420 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GC Context Base Substitution 659940 1479.73 26.00 25.96 0.04 After
REGRESSION.HCC1395_tumor.L008 GCA Context Base Insertion 202633 5.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCA Context Base Deletion 202633 7.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCC Context Base Insertion 199098 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCC Context Base Deletion 199098 9.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCG Context Base Insertion 49327 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCG Context Base Deletion 49327 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCT Context Base Insertion 208821 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCT Context Base Deletion 208821 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GG Context Base Substitution 786927 700.66 30.00 28.08 1.92 After
REGRESSION.HCC1395_tumor.L008 GGA Context Base Insertion 213597 18.74 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 GGA Context Base Deletion 213597 12.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GGC Context Base Insertion 195862 5.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GGC Context Base Deletion 195862 6.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GGG Context Base Insertion 217765 10.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GGG Context Base Deletion 217765 23.37 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 GGT Context Base Insertion 157765 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GGT Context Base Deletion 157765 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GT Context Base Substitution 588444 1013.96 28.00 26.88 1.12 After
REGRESSION.HCC1395_tumor.L008 GTA Context Base Insertion 100817 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTA Context Base Deletion 100817 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTC Context Base Insertion 126542 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTC Context Base Deletion 126542 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTG Context Base Insertion 199603 12.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTG Context Base Deletion 199603 35.02 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L008 GTT Context Base Insertion 148533 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTT Context Base Deletion 148533 16.14 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 TA Context Base Substitution 483567 1184.27 26.00 24.97 1.03 After
REGRESSION.HCC1395_tumor.L008 TAA Context Base Insertion 150119 10.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAA Context Base Deletion 150119 15.22 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 TAC Context Base Insertion 93201 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAC Context Base Deletion 93201 4.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAG Context Base Insertion 96053 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAG Context Base Deletion 96053 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAT Context Base Insertion 128848 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAT Context Base Deletion 128848 5.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TC Context Base Substitution 645400 1660.56 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L008 TCA Context Base Insertion 194774 5.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TCA Context Base Deletion 194774 15.58 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 TCC Context Base Insertion 200924 24.96 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 TCC Context Base Deletion 200924 9.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TCG Context Base Insertion 26018 0.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TCG Context Base Deletion 26018 0.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TCT Context Base Insertion 222477 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TCT Context Base Deletion 222477 13.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TG Context Base Substitution 840561 344.98 33.00 29.36 3.64 After
REGRESSION.HCC1395_tumor.L008 TGA Context Base Insertion 202573 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGA Context Base Deletion 202573 6.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGC Context Base Insertion 188546 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGC Context Base Deletion 188546 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGG Context Base Insertion 240727 4.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGG Context Base Deletion 240727 7.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGT Context Base Insertion 209958 13.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGT Context Base Deletion 209958 41.40 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L008 TT Context Base Substitution 841692 964.33 29.00 27.59 1.41 After
REGRESSION.HCC1395_tumor.L008 TTA Context Base Insertion 147846 6.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTA Context Base Deletion 147846 8.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTC Context Base Insertion 192921 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTC Context Base Deletion 192921 13.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTG Context Base Insertion 169959 5.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTG Context Base Deletion 169959 9.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTT Context Base Insertion 295511 42.62 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L008 TTT Context Base Deletion 295511 186.78 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L008 -1 Cycle Base Substitution 38344 161.79 24.00 23.34 0.66 After
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Substitution 38700 60.95 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Insertion 38700 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Deletion 38700 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Substitution 36325 75.03 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Insertion 36054 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Deletion 36054 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Substitution 36291 91.70 26.00 25.66 0.34 After
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Insertion 36034 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Deletion 36034 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Substitution 36303 62.71 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Insertion 36032 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Deletion 36032 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Substitution 36083 85.20 26.00 25.82 0.18 After
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Insertion 35803 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Deletion 35803 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Substitution 35961 79.02 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Insertion 35653 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Deletion 35653 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Substitution 36059 87.35 26.00 26.70 -0.70 After
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Insertion 35746 0.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Deletion 35746 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Substitution 35784 62.56 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Insertion 35490 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Deletion 35490 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Substitution 35783 80.12 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Insertion 35483 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Deletion 35483 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Substitution 35778 81.01 26.00 25.78 0.22 After
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Insertion 35476 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Deletion 35476 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Substitution 35773 90.95 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Insertion 35451 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Deletion 35451 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Substitution 38746 61.47 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Insertion 38746 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Deletion 38746 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Substitution 35637 73.05 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Insertion 35279 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Deletion 35279 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Substitution 35546 75.01 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Insertion 35177 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Deletion 35177 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Substitution 35549 88.76 26.00 25.77 0.23 After
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Insertion 35191 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Deletion 35191 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Substitution 35387 99.01 26.00 26.10 -0.10 After
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Insertion 35024 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Deletion 35024 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Substitution 35134 69.84 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Insertion 34762 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Deletion 34762 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Substitution 35180 73.61 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Insertion 34796 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Deletion 34796 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Substitution 35070 84.50 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Insertion 34663 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Deletion 34663 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Substitution 34927 84.58 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Insertion 34533 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Deletion 34533 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Substitution 34869 79.01 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Insertion 34483 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Deletion 34483 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Substitution 34803 111.22 25.00 26.30 -1.30 After
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Insertion 34408 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Deletion 34408 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Substitution 38656 49.91 28.00 27.52 0.48 After
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Insertion 38656 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Deletion 38656 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Substitution 34784 89.72 26.00 25.72 0.28 After
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Insertion 34407 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Deletion 34407 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Substitution 34495 81.29 26.00 26.24 -0.24 After
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Insertion 34112 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Deletion 34112 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Substitution 34541 82.18 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Insertion 34153 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Deletion 34153 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Substitution 34451 78.68 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Insertion 34055 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Deletion 34055 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Substitution 34286 77.74 26.00 26.16 -0.16 After
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Insertion 33898 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Deletion 33898 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Substitution 34327 103.60 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Insertion 33929 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Deletion 33929 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Substitution 34114 87.25 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Insertion 33710 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Deletion 33710 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Substitution 34093 87.90 26.00 26.08 -0.08 After
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Insertion 33715 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Deletion 33715 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Substitution 33850 84.85 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Insertion 33475 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Deletion 33475 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Substitution 33730 85.02 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Insertion 33342 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Deletion 33342 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Substitution 38664 66.34 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Insertion 38664 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Deletion 38664 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Substitution 33776 80.10 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Insertion 33389 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Deletion 33389 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Substitution 33631 65.11 27.00 26.24 0.76 After
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Insertion 33233 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Deletion 33233 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Substitution 33556 81.60 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Insertion 33152 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Deletion 33152 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Substitution 33472 73.17 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Insertion 33068 0.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Deletion 33068 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Substitution 33371 86.24 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Insertion 32933 0.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Deletion 32933 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Substitution 33286 71.50 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Insertion 32850 0.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Deletion 32850 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Substitution 33068 74.07 26.00 26.05 -0.05 After
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Insertion 32628 0.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Deletion 32628 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Substitution 33077 82.62 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Insertion 32610 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Deletion 32610 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Substitution 32935 73.32 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Insertion 32481 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Deletion 32481 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Substitution 32836 74.71 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Insertion 32390 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Deletion 32390 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Substitution 38544 56.46 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Insertion 38544 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Deletion 38544 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Substitution 32674 68.64 27.00 26.13 0.87 After
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Insertion 32168 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Deletion 32168 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Substitution 32613 62.36 27.00 26.28 0.72 After
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Insertion 32089 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Deletion 32089 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Substitution 32409 64.54 27.00 26.06 0.94 After
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Insertion 31783 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Deletion 31783 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Substitution 32346 63.46 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Insertion 31669 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Deletion 31669 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Substitution 32232 52.14 27.00 26.15 0.85 After
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Insertion 31499 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Deletion 31499 0.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Substitution 32085 53.03 27.00 26.21 0.79 After
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Insertion 24717 0.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Deletion 24717 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Substitution 31870 25.34 28.00 26.39 1.61 After
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Insertion 24646 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Deletion 24646 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -147 Cycle Base Substitution 31689 20.08 26.00 22.33 3.67 After
REGRESSION.HCC1395_tumor.L008 -148 Cycle Base Substitution 31442 19.97 24.00 16.05 7.95 After
REGRESSION.HCC1395_tumor.L008 -149 Cycle Base Substitution 19627 18.08 22.00 14.19 7.81 After
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Substitution 38805 41.89 29.00 28.05 0.95 After
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Insertion 38805 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Deletion 38805 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -150 Cycle Base Substitution 6945 12.09 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Substitution 38739 57.12 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Insertion 38739 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Deletion 38739 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Substitution 38601 56.48 28.00 27.38 0.62 After
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Insertion 38601 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Deletion 38601 4.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Substitution 38626 47.25 28.00 27.82 0.18 After
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Insertion 38626 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Deletion 38626 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Substitution 38591 63.86 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Insertion 38591 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Deletion 38591 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -2 Cycle Base Substitution 38916 107.88 26.00 25.51 0.49 After
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Substitution 38616 57.95 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Insertion 38616 2.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Deletion 38616 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Substitution 38454 39.64 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Insertion 38454 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Deletion 38454 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Substitution 38634 60.16 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Insertion 38634 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Deletion 38634 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Substitution 38588 58.78 28.00 27.54 0.46 After
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Insertion 38588 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Deletion 38588 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Substitution 38553 50.75 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Insertion 38553 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Deletion 38553 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Substitution 38529 54.02 28.00 27.86 0.14 After
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Insertion 38529 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Deletion 38529 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Substitution 38538 63.12 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Insertion 38538 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Deletion 38538 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Substitution 38572 52.32 28.00 26.54 1.46 After
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Insertion 38572 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Deletion 38572 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Substitution 38410 61.57 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Insertion 38409 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Deletion 38409 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Substitution 38581 58.06 28.00 26.44 1.56 After
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Insertion 38578 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Deletion 38578 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -3 Cycle Base Substitution 38898 129.51 25.00 26.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Substitution 38515 57.48 28.00 26.70 1.30 After
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Insertion 38511 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Deletion 38511 5.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Substitution 38451 74.48 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Insertion 38444 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Deletion 38444 5.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Substitution 38419 42.26 29.00 27.17 1.83 After
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Insertion 38412 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Deletion 38412 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Substitution 38487 62.90 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Insertion 38482 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Deletion 38482 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Substitution 38472 50.83 28.00 26.82 1.18 After
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Insertion 38465 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Deletion 38465 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Substitution 38423 52.58 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Insertion 38420 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Deletion 38420 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Substitution 38591 68.42 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Insertion 38586 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Deletion 38586 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Substitution 38378 53.57 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Insertion 38374 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Deletion 38374 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Substitution 38364 64.78 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Insertion 38361 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Deletion 38361 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Substitution 38337 63.75 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Insertion 38335 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Deletion 38335 4.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -4 Cycle Base Substitution 38752 81.88 27.00 26.16 0.84 After
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Substitution 38330 55.34 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Insertion 38329 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Deletion 38329 5.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Substitution 38393 52.73 28.00 26.80 1.20 After
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Insertion 38391 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Deletion 38391 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Substitution 38315 47.76 28.00 26.87 1.13 After
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Insertion 38312 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Deletion 38312 4.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Substitution 38393 57.61 28.00 26.68 1.32 After
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Insertion 38390 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Deletion 38390 4.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Substitution 38432 69.03 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Insertion 38423 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Deletion 38423 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Substitution 38281 44.59 28.00 26.74 1.26 After
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Insertion 38266 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Deletion 38266 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Substitution 38319 63.26 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Insertion 38306 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Deletion 38306 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Substitution 38265 68.26 27.00 27.08 -0.08 After
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Insertion 38252 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Deletion 38252 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Substitution 38342 66.28 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Insertion 38334 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Deletion 38334 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Substitution 38267 69.90 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Insertion 38258 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Deletion 38258 3.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Substitution 38792 67.37 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Insertion 38792 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Deletion 38792 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Substitution 38342 57.88 28.00 26.97 1.03 After
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Insertion 38329 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Deletion 38329 4.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Substitution 38217 50.75 28.00 27.11 0.89 After
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Insertion 38199 0.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Deletion 38199 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Substitution 38312 60.62 28.00 27.18 0.82 After
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Insertion 38282 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Deletion 38282 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Substitution 38277 73.96 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Insertion 38247 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Deletion 38247 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Substitution 38268 60.80 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Insertion 38227 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Deletion 38227 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Substitution 38160 85.92 26.00 26.71 -0.71 After
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Insertion 38117 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Deletion 38117 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Substitution 38268 66.14 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Insertion 38228 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Deletion 38228 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Substitution 38113 51.50 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Insertion 38069 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Deletion 38069 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Substitution 38161 65.55 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Insertion 38112 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Deletion 38112 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Substitution 38234 80.47 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Insertion 38190 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Deletion 38190 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Substitution 38781 86.58 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Insertion 38781 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Deletion 38781 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Substitution 38269 78.14 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Insertion 38214 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Deletion 38214 5.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Substitution 38164 61.23 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Insertion 38099 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Deletion 38099 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Substitution 38232 60.02 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Insertion 38164 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Deletion 38164 5.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Substitution 38123 80.23 27.00 26.20 0.80 After
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Insertion 38038 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Deletion 38038 5.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Substitution 38030 65.42 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Insertion 37944 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Deletion 37944 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Substitution 37955 78.75 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Insertion 37860 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Deletion 37860 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Substitution 37971 53.68 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Insertion 37867 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Deletion 37867 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Substitution 37985 52.05 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Insertion 37880 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Deletion 37880 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Substitution 38093 76.07 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Insertion 37987 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Deletion 37987 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Substitution 38033 64.75 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Insertion 37934 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Deletion 37934 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Substitution 38659 57.73 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Insertion 38659 0.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Deletion 38659 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Substitution 38018 68.11 27.00 27.20 -0.20 After
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Insertion 37917 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Deletion 37917 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Substitution 37775 55.87 28.00 26.73 1.27 After
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Insertion 37666 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Deletion 37666 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Substitution 37745 69.29 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Insertion 37623 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Deletion 37623 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Substitution 37889 80.06 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Insertion 37748 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Deletion 37748 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Substitution 37803 61.99 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Insertion 37664 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Deletion 37664 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Substitution 37670 63.50 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Insertion 37520 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Deletion 37520 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Substitution 37623 60.16 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Insertion 37455 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Deletion 37455 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Substitution 37508 56.86 28.00 26.64 1.36 After
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Insertion 37346 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Deletion 37346 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Substitution 37638 71.81 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Insertion 37471 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Deletion 37471 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Substitution 37496 79.18 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Insertion 37312 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Deletion 37312 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Substitution 38732 61.64 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Insertion 38732 0.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Deletion 38732 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Substitution 37441 64.37 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Insertion 37254 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Deletion 37254 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Substitution 37474 68.26 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Insertion 37275 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Deletion 37275 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Substitution 37405 79.46 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Insertion 37209 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Deletion 37209 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Substitution 37357 76.11 27.00 26.18 0.82 After
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Insertion 37150 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Deletion 37150 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Substitution 37209 69.00 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Insertion 37001 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Deletion 37001 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Substitution 37204 80.92 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Insertion 37015 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Deletion 37015 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Substitution 37249 68.95 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Insertion 37038 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Deletion 37038 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Substitution 37160 80.50 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Insertion 36960 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Deletion 36960 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Substitution 37138 73.78 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Insertion 36926 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Deletion 36926 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Substitution 37080 67.35 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Insertion 36861 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Deletion 36861 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Substitution 38787 73.75 27.00 27.26 -0.26 After
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Insertion 38787 0.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Deletion 38787 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Substitution 37027 79.42 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Insertion 36800 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Deletion 36800 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Substitution 37026 77.34 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Insertion 36793 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Deletion 36793 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Substitution 36870 91.69 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Insertion 36630 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Deletion 36630 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Substitution 36823 83.78 26.00 25.88 0.12 After
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Insertion 36557 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Deletion 36557 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Substitution 36658 71.46 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Insertion 36388 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Deletion 36388 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Substitution 36781 71.74 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Insertion 36490 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Deletion 36490 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Substitution 36636 86.06 26.00 25.99 0.01 After
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Insertion 36351 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Deletion 36351 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Substitution 36583 81.86 26.00 26.62 -0.62 After
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Insertion 36293 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Deletion 36293 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Substitution 36414 78.79 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Insertion 36145 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Deletion 36145 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Substitution 36465 73.62 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Insertion 36199 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Deletion 36199 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 1 Cycle Base Substitution 38372 84.09 26.00 25.77 0.23 After
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Substitution 38748 43.24 29.00 27.58 1.42 After
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Insertion 38748 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Deletion 38748 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Substitution 36276 73.71 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Insertion 36011 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Deletion 36011 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Substitution 36321 48.31 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Insertion 36072 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Deletion 36072 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Substitution 36222 51.40 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Insertion 35955 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Deletion 35955 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Substitution 36161 66.94 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Insertion 35871 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Deletion 35871 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Substitution 36098 54.47 28.00 26.74 1.26 After
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Insertion 35811 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Deletion 35811 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Substitution 36032 61.84 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Insertion 35732 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Deletion 35732 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Substitution 36036 63.45 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Insertion 35751 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Deletion 35751 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Substitution 35799 65.29 27.00 27.17 -0.17 After
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Insertion 35511 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Deletion 35511 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Substitution 35741 77.13 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Insertion 35451 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Deletion 35451 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Substitution 35776 48.20 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Insertion 35462 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Deletion 35462 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Substitution 38747 39.82 29.00 27.36 1.64 After
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Insertion 38747 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Deletion 38747 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Substitution 35734 71.69 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Insertion 35380 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Deletion 35380 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Substitution 35746 72.37 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Insertion 35374 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Deletion 35374 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Substitution 35582 68.59 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Insertion 35207 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Deletion 35207 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Substitution 35640 66.96 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Insertion 35265 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Deletion 35265 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Substitution 35407 59.29 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Insertion 35044 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Deletion 35044 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Substitution 35247 67.08 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Insertion 34864 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Deletion 34864 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Substitution 35169 77.73 26.00 26.69 -0.69 After
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Insertion 34770 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Deletion 34770 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Substitution 34990 73.31 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Insertion 34594 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Deletion 34594 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Substitution 34843 55.93 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Insertion 34482 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Deletion 34482 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Substitution 34977 75.76 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Insertion 34609 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Deletion 34609 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Substitution 38741 42.49 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Insertion 38741 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Deletion 38741 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Substitution 34757 60.65 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Insertion 34403 0.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Deletion 34403 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Substitution 34831 83.90 26.00 26.74 -0.74 After
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Insertion 34446 0.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Deletion 34446 4.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Substitution 34440 60.28 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Insertion 34044 0.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Deletion 34044 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Substitution 34467 69.40 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Insertion 34079 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Deletion 34079 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Substitution 34420 77.91 26.00 26.55 -0.55 After
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Insertion 34029 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Deletion 34029 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Substitution 34387 72.34 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Insertion 34002 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Deletion 34002 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Substitution 34250 82.92 26.00 26.60 -0.60 After
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Insertion 33879 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Deletion 33879 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Substitution 34132 62.21 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Insertion 33774 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Deletion 33774 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Substitution 33985 74.48 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Insertion 33624 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Deletion 33624 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Substitution 33951 58.79 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Insertion 33586 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Deletion 33586 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Substitution 38687 52.32 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Insertion 38687 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Deletion 38687 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Substitution 33806 69.25 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Insertion 33427 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Deletion 33427 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Substitution 33886 76.68 26.00 26.60 -0.60 After
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Insertion 33506 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Deletion 33506 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Substitution 33744 78.26 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Insertion 33341 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Deletion 33341 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Substitution 33540 80.20 26.00 26.64 -0.64 After
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Insertion 33165 0.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Deletion 33165 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Substitution 33417 65.25 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Insertion 33021 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Deletion 33021 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Substitution 33356 61.25 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Insertion 32928 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Deletion 32928 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Substitution 33197 70.75 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Insertion 32791 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Deletion 32791 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Substitution 33194 56.47 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Insertion 32779 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Deletion 32779 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Substitution 33047 64.36 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Insertion 32645 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Deletion 32645 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Substitution 33025 67.73 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Insertion 32613 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Deletion 32613 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Substitution 38592 34.10 29.00 28.16 0.84 After
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Insertion 38592 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Deletion 38592 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Substitution 32865 65.61 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Insertion 32450 0.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Deletion 32450 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Substitution 32891 59.83 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Insertion 32461 0.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Deletion 32461 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Substitution 32736 76.37 26.00 26.64 -0.64 After
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Insertion 32287 0.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Deletion 32287 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Substitution 32625 76.80 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Insertion 32165 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Deletion 32165 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Substitution 32441 74.95 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Insertion 31956 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Deletion 31956 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Substitution 32432 71.89 26.00 26.44 -0.44 After
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Insertion 31931 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Deletion 31931 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Substitution 32326 66.70 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Insertion 31857 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Deletion 31857 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 147 Cycle Base Substitution 32048 72.19 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L008 148 Cycle Base Substitution 31936 90.88 26.00 26.58 -0.58 After
REGRESSION.HCC1395_tumor.L008 149 Cycle Base Substitution 31814 81.24 26.00 26.42 -0.42 After
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Substitution 38693 45.97 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Insertion 38693 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Deletion 38693 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 150 Cycle Base Substitution 31769 83.20 26.00 26.55 -0.55 After
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Substitution 38523 25.81 30.00 28.68 1.32 After
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Insertion 38523 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Deletion 38523 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Substitution 38582 40.06 29.00 28.50 0.50 After
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Insertion 38582 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Deletion 38582 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Substitution 38599 23.64 30.00 28.92 1.08 After
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Insertion 38598 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Deletion 38598 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Substitution 38617 31.04 30.00 28.71 1.29 After
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Insertion 38616 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Deletion 38616 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 2 Cycle Base Substitution 38826 75.82 27.00 27.59 -0.59 After
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Substitution 38575 38.51 29.00 28.60 0.40 After
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Insertion 38574 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Deletion 38574 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Substitution 38518 27.72 30.00 28.53 1.47 After
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Insertion 38517 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Deletion 38517 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Substitution 38695 21.78 30.00 28.75 1.25 After
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Insertion 38695 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Deletion 38695 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Substitution 38458 29.91 30.00 28.59 1.41 After
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Insertion 38458 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Deletion 38458 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Substitution 38563 30.56 30.00 28.76 1.24 After
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Insertion 38562 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Deletion 38562 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Substitution 38469 34.25 29.00 28.43 0.57 After
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Insertion 38468 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Deletion 38468 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Substitution 38490 50.02 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Insertion 38489 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Deletion 38489 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Substitution 38587 35.98 29.00 27.56 1.44 After
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Insertion 38583 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Deletion 38583 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Substitution 38551 42.05 29.00 28.20 0.80 After
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Insertion 38548 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Deletion 38548 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Substitution 38533 34.91 29.00 27.79 1.21 After
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Insertion 38528 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Deletion 38528 4.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 3 Cycle Base Substitution 38862 105.45 26.00 27.21 -1.21 After
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Substitution 38581 44.55 28.00 27.87 0.13 After
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Insertion 38576 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Deletion 38576 5.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Substitution 38380 32.42 29.00 27.87 1.13 After
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Insertion 38377 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Deletion 38377 5.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Substitution 38514 58.53 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Insertion 38509 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Deletion 38509 5.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Substitution 38485 33.48 29.00 27.71 1.29 After
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Insertion 38483 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Deletion 38483 4.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Substitution 38421 41.50 29.00 27.59 1.41 After
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Insertion 38416 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Deletion 38416 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Substitution 38473 45.09 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Insertion 38469 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Deletion 38469 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Substitution 38481 49.89 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Insertion 38479 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Deletion 38479 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Substitution 38363 37.72 29.00 27.92 1.08 After
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Insertion 38361 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Deletion 38361 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Substitution 38427 42.56 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Insertion 38422 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Deletion 38422 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Substitution 38443 47.18 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Insertion 38440 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Deletion 38440 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 4 Cycle Base Substitution 38936 75.36 27.00 27.24 -0.24 After
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Substitution 38444 48.14 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Insertion 38441 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Deletion 38441 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Substitution 38461 46.89 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Insertion 38456 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Deletion 38456 4.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Substitution 38373 48.06 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Insertion 38372 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Deletion 38372 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Substitution 38454 35.60 29.00 28.25 0.75 After
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Insertion 38453 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Deletion 38453 4.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Substitution 38464 48.59 29.00 28.05 0.95 After
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Insertion 38460 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Deletion 38460 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Substitution 38370 43.05 29.00 28.25 0.75 After
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Insertion 38364 2.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Deletion 38364 4.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Substitution 38365 37.27 29.00 28.20 0.80 After
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Insertion 38355 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Deletion 38355 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Substitution 38290 45.87 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Insertion 38279 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Deletion 38279 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Substitution 38318 55.26 28.00 27.76 0.24 After
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Insertion 38311 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Deletion 38311 4.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Substitution 38367 49.08 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Insertion 38356 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Deletion 38356 4.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Substitution 38855 47.25 28.00 27.92 0.08 After
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Insertion 38855 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Deletion 38855 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Substitution 38364 46.49 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Insertion 38348 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Deletion 38348 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Substitution 38178 47.61 29.00 28.27 0.73 After
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Insertion 38155 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Deletion 38155 4.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Substitution 38258 42.36 29.00 27.78 1.22 After
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Insertion 38229 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Deletion 38229 4.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Substitution 38229 38.30 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Insertion 38202 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Deletion 38202 4.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Substitution 38244 52.53 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Insertion 38215 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Deletion 38215 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Substitution 38150 29.36 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Insertion 38113 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Deletion 38113 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Substitution 38346 40.98 29.00 27.61 1.39 After
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Insertion 38303 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Deletion 38303 4.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Substitution 38155 47.34 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Insertion 38114 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Deletion 38114 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Substitution 38261 43.46 29.00 27.62 1.38 After
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Insertion 38208 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Deletion 38208 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Substitution 38208 39.79 29.00 27.73 1.27 After
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Insertion 38163 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Deletion 38163 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Substitution 38798 47.72 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Insertion 38798 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Deletion 38798 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Substitution 38094 54.82 28.00 27.54 0.46 After
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Insertion 38043 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Deletion 38043 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Substitution 38170 47.01 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Insertion 38104 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Deletion 38104 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Substitution 38057 63.61 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Insertion 37991 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Deletion 37991 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Substitution 38067 59.93 28.00 27.42 0.58 After
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Insertion 37985 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Deletion 37985 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Substitution 38022 52.63 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Insertion 37932 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Deletion 37932 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Substitution 38078 40.28 29.00 27.58 1.42 After
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Insertion 37990 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Deletion 37990 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Substitution 37902 43.59 28.00 27.93 0.07 After
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Insertion 37804 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Deletion 37804 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Substitution 37947 55.07 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Insertion 37857 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Deletion 37857 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Substitution 37950 72.80 27.00 27.46 -0.46 After
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Insertion 37856 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Deletion 37856 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Substitution 37972 52.25 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Insertion 37880 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Deletion 37880 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Substitution 38698 41.57 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Insertion 38698 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Deletion 38698 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Substitution 37880 38.27 29.00 28.06 0.94 After
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Insertion 37779 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Deletion 37779 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Substitution 37947 39.92 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Insertion 37828 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Deletion 37828 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Substitution 37827 54.91 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Insertion 37704 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Deletion 37704 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Substitution 37914 63.44 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Insertion 37780 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Deletion 37780 5.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Substitution 37725 62.87 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Insertion 37584 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Deletion 37584 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Substitution 37757 55.67 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Insertion 37610 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Deletion 37610 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Substitution 37721 56.40 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Insertion 37560 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Deletion 37560 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Substitution 37635 64.93 28.00 27.32 0.68 After
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Insertion 37481 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Deletion 37481 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Substitution 37593 54.22 28.00 27.33 0.67 After
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Insertion 37434 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Deletion 37434 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Substitution 37540 66.98 27.00 27.36 -0.36 After
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Insertion 37362 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Deletion 37362 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Substitution 38696 47.31 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Insertion 38696 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Deletion 38696 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Substitution 37487 60.89 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Insertion 37309 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Deletion 37309 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Substitution 37473 56.85 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Insertion 37259 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Deletion 37259 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Substitution 37375 56.58 28.00 27.30 0.70 After
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Insertion 37176 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Deletion 37176 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Substitution 37305 53.91 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Insertion 37112 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Deletion 37112 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Substitution 37242 68.87 27.00 27.08 -0.08 After
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Insertion 37038 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Deletion 37038 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Substitution 37306 59.88 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Insertion 37109 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Deletion 37109 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Substitution 37206 55.05 28.00 26.77 1.23 After
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Insertion 36984 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Deletion 36984 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Substitution 37214 50.05 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Insertion 37007 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Deletion 37007 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Substitution 37021 75.05 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Insertion 36809 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Deletion 36809 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Substitution 36984 54.17 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Insertion 36777 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Deletion 36777 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Substitution 38736 44.84 29.00 27.73 1.27 After
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Insertion 38736 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Deletion 38736 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Substitution 37020 54.60 28.00 27.20 0.80 After
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Insertion 36796 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Deletion 36796 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Substitution 37131 62.14 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Insertion 36906 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Deletion 36906 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Substitution 36917 74.22 27.00 27.06 -0.06 After
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Insertion 36694 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Deletion 36694 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Substitution 36865 52.25 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Insertion 36611 0.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Deletion 36611 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Substitution 36791 56.25 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Insertion 36525 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Deletion 36525 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Substitution 36810 56.98 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Insertion 36523 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Deletion 36523 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Substitution 36720 65.21 27.00 27.10 -0.10 After
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Insertion 36436 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Deletion 36436 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Substitution 36634 64.22 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Insertion 36341 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Deletion 36341 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Substitution 36560 64.65 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Insertion 36288 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Deletion 36288 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Substitution 36297 61.29 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Insertion 36033 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Deletion 36033 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 10 QualityScore Base Substitution 25817 2703.69 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L008 11 QualityScore Base Substitution 9320 666.82 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L008 12 QualityScore Base Substitution 28017 1699.55 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L008 13 QualityScore Base Substitution 12484 251.74 16.00 13.00 3.00 After
REGRESSION.HCC1395_tumor.L008 14 QualityScore Base Substitution 12216 180.75 17.00 14.00 3.00 After
REGRESSION.HCC1395_tumor.L008 15 QualityScore Base Substitution 17499 13.32 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L008 16 QualityScore Base Substitution 7760 0.33 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L008 17 QualityScore Base Substitution 14222 0.87 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L008 21 QualityScore Base Substitution 98 0.00 21.00 21.00 0.00 After
REGRESSION.HCC1395_tumor.L008 22 QualityScore Base Substitution 39105 228.29 22.00 22.00 0.00 After
REGRESSION.HCC1395_tumor.L008 23 QualityScore Base Substitution 74322 431.18 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 24 QualityScore Base Substitution 120544 417.96 25.00 24.00 1.00 After
REGRESSION.HCC1395_tumor.L008 25 QualityScore Base Substitution 110480 193.93 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L008 28 QualityScore Base Substitution 8195 0.72 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L008 29 QualityScore Base Substitution 60065 101.67 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 30 QualityScore Base Substitution 2574900 1624.58 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L008 31 QualityScore Base Substitution 2728435 1107.52 34.00 31.00 3.00 After
REGRESSION.HCC1395_tumor.L008 32 QualityScore Base Substitution 4595913 1105.58 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L008 33 QualityScore Base Substitution 495366 81.78 36.00 33.00 3.00 After
REGRESSION.HCC1395_tumor.L008 45 QualityScore Base Insertion 10990089 458.83 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 45 QualityScore Base Deletion 10990089 1015.37 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L008 8 QualityScore Base Substitution 2387 424.35 8.00 8.00 0.00 After
REGRESSION.HCC1395_tumor.L008 9 QualityScore Base Substitution 52944 7554.85 8.00 9.00 -1.00 After
16414 rows