cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:73000001, elapsed 0.1s, est remaining 2.1s, peak mem 822MB, user 0.2s, sys 2.5s, output queue size 154
progress 10% @chr1:162000001, elapsed 0.2s, est remaining 1.7s, peak mem 822MB, user 0.3s, sys 10.5s, output queue size 315
progress 15% @chr1:169000001, elapsed 0.3s, est remaining 1.5s, peak mem 822MB, user 0.4s, sys 22.8s, output queue size 477
progress 20% @chr5:49000001, elapsed 0.3s, est remaining 1.3s, peak mem 822MB, user 0.7s, sys 39.3s, output queue size 639
progress 25% @chr6:9000001, elapsed 0.4s, est remaining 1.1s, peak mem 822MB, user 1.1s, sys 51.0s, output queue size 799
progress 30% @chr7:18000001, elapsed 0.4s, est remaining 1.0s, peak mem 822MB, user 1.4s, sys 65.5s, output queue size 961
progress 35% @chr1:193000001, elapsed 0.5s, est remaining 0.9s, peak mem 822MB, user 1.9s, sys 79.5s, output queue size 1122
progress 40% @chr9:15000001, elapsed 0.5s, est remaining 0.8s, peak mem 822MB, user 2.3s, sys 92.9s, output queue size 1284
progress 45% @chr9:83000001, elapsed 0.6s, est remaining 0.7s, peak mem 822MB, user 2.7s, sys 108.0s, output queue size 1191
progress 50% @chr8:140000001, elapsed 0.6s, est remaining 0.6s, peak mem 822MB, user 3.1s, sys 125.6s, output queue size 1351
progress 55% @chr12:58000001, elapsed 0.7s, est remaining 0.6s, peak mem 822MB, user 3.5s, sys 141.8s, output queue size 1514
progress 60% @chr13:83000001, elapsed 0.8s, est remaining 0.5s, peak mem 822MB, user 3.9s, sys 154.5s, output queue size 1676
progress 65% @chr14:51000001, elapsed 0.8s, est remaining 0.4s, peak mem 822MB, user 4.3s, sys 170.9s, output queue size 1838
progress 70% @chr16:3000001, elapsed 0.9s, est remaining 0.4s, peak mem 822MB, user 4.9s, sys 188.3s, output queue size 1999
progress 75% @chr18:5000001, elapsed 0.9s, est remaining 0.3s, peak mem 822MB, user 5.5s, sys 206.5s, output queue size 2161
progress 80% @chr12:90000001, elapsed 1.0s, est remaining 0.2s, peak mem 822MB, user 6.0s, sys 226.8s, output queue size 2323
progress 85% @chr15:84000001, elapsed 1.0s, est remaining 0.2s, peak mem 822MB, user 6.3s, sys 244.4s, output queue size 2485
progress 90% @chr22:41000001, elapsed 1.1s, est remaining 0.1s, peak mem 822MB, user 6.9s, sys 264.0s, output queue size 2769
progress 95% @chr17_KI270858v1_alt:1, elapsed 1.2s, est remaining 0.1s, peak mem 822MB, user 7.6s, sys 291.6s, output queue size 3095
progress 100% @HLA-DRB1*04:03:01:1, elapsed 1.3s, est remaining 0.0s, peak mem 822MB, user 8.0s, sys 329.3s, output queue size 6232
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 50711
output file size: 43806
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.001 user 0.000 sys 0.011 real
"predict_filter": 171 calls 0.013 user 0.076 sys 0.411 real
advance: 3219322 calls 0.452 user 113.277 sys 117.944 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.005 sys 1.363 real
fetch_ref: 448 calls 0.001 user 0.099 sys 0.518 real
idle: 20633 calls 0.553 user 0.834 sys 694.052 real
init: 1 calls 0.375 user 0.126 sys 0.643 real
overall: 862064640 mem 9.722 user 337.486 sys 3.307 real