Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/07bcdba9aeed0396ab8d411c4e2ca2/germline_control_1.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/fe8d70fe21a50bb3fe5748bd690387/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/fe8d70fe21a50bb3fe5748bd690387/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/69d6a7336a1ae37b3ee48e2ddddccc/germline_control_1.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: germline_control_1.mpileup.gz
Found 18 positions with indel observations
Annotating VCF: germline_control_1.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'germline_control_1.haplotyper.split.vcf.gz'
Output written to: germline_control_1.entropy.vcf