.command.sh - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS (negative_somatic_control_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/177fbf7fbce32d863106c377a7b828/.command.sh
Size: 401 bytes
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS (negative_somatic_control_1)
Attempt

Content

#!/bin/bash -Ceuo pipefail
label_hotspots_vep.py \
    negative_somatic_control_1.snv_indel.phased.vep.vcf.gz \
    negative_somatic_control_1.snv_indel.hotspot.vcf.gz \
    --definitions hotspot_definitions.tsv

cat <<-END_VERSIONS > versions.yml
"DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS":
    python: $(python3 --version | sed 's/Python //')
END_VERSIONS