File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/db6aa9001e4241e23b485c910e9f4e/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-bto0moja because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:45:30,687 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:45:31,551 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:45:31,726 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:45:32,785 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:45:32,856 - cnv_pipe.batch.run_model - INFO - Processing cluster 2637 with 197 probes
2026-06-08 17:45:33,338 - cnv_pipe.batch.run_model.cluster2637 - INFO - Child process started for cluster 2637 with 197 probes
2026-06-08 17:46:31,797 - cnv_pipe.batch.run_model.cluster2637 - INFO - Child process finished cluster 2637. Wrote cluster_2637_samples.csv and cluster_2637_params.csv
2026-06-08 17:46:31,799 - cnv_pipe.batch.run_model - INFO - Cluster 2637 finished in 58.94 seconds. Status: SUCCESS