File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/72eaf4353c1fa6d6652695627293b9/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX7guM3m/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX7guM3m/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX7guM3m/chr4_22420786-22421189.bed.gz.tbi
[2026-06-08T17:36:20.745543Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:20.748126Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:20.748142Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:20.748147Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:20.748151Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX7guM3m'
[2026-06-08T17:36:20.748155Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:20.748166Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:20.748170Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:20.748175Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:20.748179Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:20.748189Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:20.748195Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:20.748201Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:20.748206Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:20.748724Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:20.748850Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:20.754892Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:20.755783Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:20.756107Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:20.756521Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:20.756870Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.757346Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.757438Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.757510Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.757630Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.757699Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.757819Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.757880Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.758371Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.758577Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.758727Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.758986Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.759348Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.761742Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.762091Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.762368Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:20.762721Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.762790Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.762905Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.762969Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.763142Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.763211Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.763327Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.763394Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.763505Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.763574Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.763744Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.763897Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.764534Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.764823Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.764942Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.765012Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.765133Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.765193Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.765310Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.765372Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.765483Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.765548Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.765664Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.765725Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.765841Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.766049Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.766455Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.766524Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.766634Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.766696Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.766813Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.766878Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.767048Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.767116Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.767221Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.767287Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.767397Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.767525Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.768102Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.768194Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.768309Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.768376Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.768484Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.768547Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.768659Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.768723Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.768835Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.768906Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.769014Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.769155Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.769749Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.769815Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.769931Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.769997Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.770108Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.770173Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.770281Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.770346Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.771651Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.772299Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.772441Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.772520Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.772633Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.772703Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.772815Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.772877Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.772993Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.773056Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.773167Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.773239Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.773637Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.774229Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.774355Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.774418Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.774531Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.774602Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.774706Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.774771Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.774886Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.774946Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.792161Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.792760Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.792927Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.793234Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.794241Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.794433Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.794721Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.795106Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.795432Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.795895Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.796627Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.797421Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.798579Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.798759Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.801254Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.802111Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.802755Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T17:36:20.803469Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:20.804120Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.807463Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T17:36:20.807809Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.814645Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T17:36:20.815248Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T17:36:20.818644Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T17:36:20.822564Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T17:36:20.827767Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T17:36:20.828152Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T17:36:21.543722Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.544759Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.548325Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T17:36:21.859882Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.860846Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.864202Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T17:36:21.877100Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.877993Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.881237Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T17:36:21.893861Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.894905Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.897776Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T17:36:22.009134Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.010128Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.013620Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T17:36:22.174768Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.175846Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.180488Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T17:36:22.341518Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.342624Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.345994Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T17:36:22.407175Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.408134Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.411299Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T17:36:22.722999Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.723105Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.724405Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.724864Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.728374Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T17:36:22.729899Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T17:36:22.789700Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.791030Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.795212Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T17:36:22.956436Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.957721Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.961684Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T17:36:23.022313Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.023667Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.026955Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T17:36:23.188250Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.189458Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.192790Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T17:36:23.404273Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.405741Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.408772Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T17:36:23.421755Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.423004Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.426928Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T17:36:23.455940Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.457396Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.461486Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T17:36:23.463161Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.464405Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.468004Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T17:36:23.529114Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.530095Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.534142Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T17:36:23.534304Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.535082Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.538642Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T17:36:23.599914Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.600007Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.600859Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.601286Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.605213Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T17:36:23.606383Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T17:36:23.866853Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.867903Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.871253Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T17:36:23.932675Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.933632Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.936677Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T17:36:23.997811Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.998906Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.002609Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T17:36:24.007149Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.007921Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.010958Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T17:36:24.122428Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.123355Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.126798Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T17:36:24.188104Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.189048Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.192768Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T17:36:24.303985Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.304890Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.308348Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T17:36:24.670625Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.670725Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.671610Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.672021Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.676361Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T17:36:24.678268Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T17:36:24.737357Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.737475Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.738366Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.738778Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.743342Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T17:36:24.810860Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T17:36:24.853136Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.854074Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.857859Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T17:36:24.918851Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.919783Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.923177Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T17:36:24.984335Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.984452Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.985290Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.987473Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.988383Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T17:36:24.990723Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T17:36:25.052248Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.052334Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.053155Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.053671Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.058119Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T17:36:25.059595Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T17:36:25.121023Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.121997Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.125997Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T17:36:25.187118Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.188026Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.191618Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T17:36:25.220793Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.221661Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.225525Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T17:36:25.286740Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.287643Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.290878Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T17:36:25.552517Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.553357Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.556718Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T17:36:25.617983Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.618858Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.622517Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T17:36:25.733724Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.734594Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.738556Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T17:36:25.849918Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.850661Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.854372Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T17:36:25.915317Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.915380Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.916129Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.916424Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.919950Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T17:36:25.921139Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T17:36:25.981059Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.981146Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.982036Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.983223Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.986490Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T17:36:25.987648Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T17:36:25.988855Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.989488Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.992702Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T17:36:26.021602Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.022422Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.025523Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T17:36:26.054703Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.055442Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.058420Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T17:36:26.119861Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.120650Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.124392Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T17:36:26.185327Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.186118Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.189489Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T17:36:26.802224Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.802974Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.806427Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T17:36:27.018427Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.019359Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.023691Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T17:36:27.035967Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.036781Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.040355Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T17:36:27.101692Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.102730Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.106751Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T17:36:27.217925Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.218893Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.220296Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.223314Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.225313Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T17:36:27.226658Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T17:36:27.256292Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.257111Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.260562Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T17:36:27.321844Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.322770Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.326333Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T17:36:27.437705Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.438614Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.442456Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T17:36:27.503532Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.504420Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.508114Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T17:36:27.508378Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.508938Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.512543Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T17:36:27.541239Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.542151Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.546029Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T17:36:27.546590Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.547175Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.550424Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T17:36:27.579472Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.579586Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.580310Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.580690Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.584314Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T17:36:27.585826Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T17:36:27.586258Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.586835Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.589875Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T17:36:27.619012Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.619127Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.619780Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.621878Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.623549Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T17:36:27.626166Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T17:36:27.630911Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.631517Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.635154Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T17:36:27.663798Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.663905Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.664536Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.664876Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.668244Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T17:36:27.670978Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T17:36:27.673711Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.674308Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.678070Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T17:36:27.706957Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.707066Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.707093Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.707725Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.708195Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.708884Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.713919Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T17:36:27.714200Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T17:36:27.742287Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.742953Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.746217Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T17:36:27.746986Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T17:36:27.747393Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.747474Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.811754Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.976566Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.977202Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.980970Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T17:36:28.042223Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.408135Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.408766Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.412689Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T17:36:28.473699Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.473805Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.474395Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.478575Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T17:36:28.539693Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.055310Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.055877Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.060079Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T17:36:29.120752Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.120838Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.121310Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.124337Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T17:36:29.185606Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.185993Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.186150Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.187082Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.189054Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.189730Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:29.193079Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:29.222560Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:29.222879Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.222952Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.223402Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.223718Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.223970Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.226955Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:29.227842Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:29.256184Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.256251Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.256432Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.259652Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:29.288264Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.357142Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:39.636597Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:39.636597Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] 
[2026-06-08T17:36:39.636597Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:39.636682Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] 
[2026-06-08T17:36:39.636690Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:39.636698Z] [nf-6272eaf4353c1fa6d6652695627293b9-5e30c-96tsv] [629_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec