[2026-06-08T17:36:25.738249Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:25.777020Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:25.777057Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:25.777065Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:25.777070Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXrKwLWB'
[2026-06-08T17:36:25.777074Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:25.777079Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:25.777083Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:25.777087Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:25.777091Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:25.777094Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:25.777098Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:25.777102Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:25.777105Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:25.777847Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:25.777997Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:25.783795Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:25.784438Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:25.784662Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:25.784898Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:25.785157Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.786113Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.786222Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.786464Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.786658Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.786970Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.787064Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.787434Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.787754Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.789622Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.790277Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.790644Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:25.790785Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.790941Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.791529Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.791609Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.791724Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.791790Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.791902Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.791964Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.792148Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.792213Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.792343Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.792415Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.792534Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.792982Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.793658Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.793828Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.794152Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.794219Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.794362Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.794452Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.794564Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.794628Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.794741Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.794806Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.794915Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.794979Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.795096Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.795241Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.795700Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.795771Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.795894Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.795957Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.796064Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.796129Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.796250Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.796379Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.796502Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.796570Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.796840Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.797266Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.797382Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.797446Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.797557Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.797620Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.797727Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.797794Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.797899Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.797961Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.798071Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.798131Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.798243Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.798432Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.814124Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.814398Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.814474Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.814627Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.814711Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.814795Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.814863Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.814971Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.815038Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:25.815086Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:25.817750Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.818509Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.819063Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.819825Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.821303Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.825061Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.828714Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T17:36:25.830848Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T17:36:25.836708Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T17:36:25.837225Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.841299Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T17:36:25.843111Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.845176Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.850543Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T17:36:25.855850Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T17:36:25.857739Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T17:36:25.914007Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.914867Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.918889Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T17:36:25.920706Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:25.923347Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.923409Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.924077Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.924427Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.928363Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T17:36:25.929212Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T17:36:25.932430Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.933092Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.937170Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T17:36:25.997306Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.997387Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.998102Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.998433Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.002389Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T17:36:26.003947Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T17:36:26.063570Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.064332Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.068110Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T17:36:26.530751Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.531757Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.536151Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T17:36:26.596800Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.597757Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.601298Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:26.662509Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.663739Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.664269Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.665713Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.669328Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T17:36:26.670368Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T17:36:26.698127Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.698991Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.703088Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T17:36:26.763772Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.764725Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.768778Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T17:36:26.797397Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.798245Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.802034Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T17:36:26.802246Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.802809Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.805692Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T17:36:26.834954Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.835807Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.840425Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T17:36:26.868313Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.868395Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.869074Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.869442Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.873735Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T17:36:26.874878Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T17:36:27.034952Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.035846Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.039808Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T17:36:27.151030Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.151934Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.155581Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T17:36:27.367312Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.368076Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.371885Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T17:36:27.432826Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.433625Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.437150Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:27.498221Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.498324Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.498361Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.499174Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.499596Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.500031Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.504876Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T17:36:27.507997Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T17:36:27.549386Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T17:36:27.565750Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.565824Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.565848Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.566556Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.566949Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.567287Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.572196Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T17:36:27.573630Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T17:36:27.574735Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T17:36:27.631619Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.631705Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.632406Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.632886Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.636534Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T17:36:27.637577Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T17:36:27.697614Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.697722Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.698428Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.698920Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.703110Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T17:36:27.734266Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T17:36:27.764329Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.765128Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.769455Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T17:36:27.830341Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.831134Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.834465Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T17:36:27.895888Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.896799Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.900608Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T17:36:27.961849Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.961973Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.962683Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.963134Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.967104Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T17:36:27.968367Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T17:36:28.028177Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.028947Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.032715Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T17:36:28.093820Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.093926Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.094579Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.094947Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.098353Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T17:36:28.099785Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T17:36:28.159667Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.159799Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.160451Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.160823Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.164791Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T17:36:28.165553Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T17:36:28.225753Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.225847Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.226487Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.227051Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.230907Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T17:36:28.259771Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.260372Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.263644Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T17:36:28.264008Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T17:36:28.264449Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.264856Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.268575Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T17:36:28.297178Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.298055Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.301691Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T17:36:28.301981Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.302424Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.305748Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T17:36:28.334489Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.335063Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.338699Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T17:36:28.343159Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.374925Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.406654Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.407075Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.410364Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T17:36:28.471692Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.586073Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.586802Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.590096Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T17:36:28.651293Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.815955Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.816731Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.820045Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T17:36:28.881351Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.797689Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.798408Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.802169Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T17:36:29.806824Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.807501Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.810505Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T17:36:29.839749Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.841271Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.005988Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.006606Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.010075Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T17:36:30.071459Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.071797Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.072001Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.072375Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.073100Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.079303Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:30.079578Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:30.080755Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:30.138171Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.138267Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.138297Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.138590Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.139135Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.142502Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:30.143611Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:30.171978Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.173310Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.173516Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.176837Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:30.238123Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.455922Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:36.331884Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:36.331884Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] 
[2026-06-08T17:36:36.331884Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:36.331946Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] 
[2026-06-08T17:36:36.331953Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:36.331959Z] [nf-61faab0c21807f7326b7e52fa4fa29e8-b0423-65gbd] [665_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec