File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/6843505b2154313876b96221bd7dbf/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-08T17:36:34.315610Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:34.316907Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:34.316923Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:34.316928Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:34.316932Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX1AkUCC'
[2026-06-08T17:36:34.316936Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:34.316941Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:34.316944Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:34.316948Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:34.316952Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:34.316955Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:34.316959Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:34.316963Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:34.316967Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:34.317562Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:34.317741Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:34.324256Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:34.325298Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:34.325598Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:34.325914Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:34.326290Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.326997Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.327089Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.327162Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.327277Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.327362Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.327737Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.328059Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.328281Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.328570Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.328915Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.329323Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.329891Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.332070Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.332540Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.332798Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:34.333243Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.333563Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.333930Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.333994Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.334181Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.334249Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.334363Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.334435Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.334548Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.334609Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.334725Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.334790Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.335069Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.335368Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.335484Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.335588Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.335703Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.335767Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.335875Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.335939Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.336048Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.336115Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.336251Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.336321Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.336563Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.336952Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.337077Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.337143Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.337270Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.337343Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.337464Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.337585Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.337704Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.337771Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.337881Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.337976Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.338291Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.338763Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.338880Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.338942Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.339054Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.339121Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.339227Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.339290Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.339400Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.339461Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.339574Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.339638Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.339768Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.339966Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.340267Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.340935Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.341507Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.341578Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.341686Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.341751Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.341869Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.341932Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.360609Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.361063Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.361294Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.361504Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.362382Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.362662Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.363093Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.363503Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.364009Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.364614Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.365088Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.365980Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.366457Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.367647Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.368900Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.369604Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.370769Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.371341Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:34.372342Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:34.375573Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T17:36:34.378291Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T17:36:34.382121Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:34.384753Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T17:36:34.389255Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T17:36:34.390036Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:34.392786Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:34.455509Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.456397Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.461558Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.461937Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T17:36:34.462727Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.466194Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T17:36:35.229130Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.230198Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.233314Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T17:36:35.246502Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.247312Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.250072Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T17:36:35.311706Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.312563Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.315848Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T17:36:35.376677Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.377513Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.380337Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T17:36:35.692605Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.693471Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.696677Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:35.757739Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.758549Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.762086Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:35.823028Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.823844Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.826248Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T17:36:35.855883Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.855967Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.856730Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.857119Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.861306Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T17:36:35.861628Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T17:36:35.973322Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.974161Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.977412Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:36.038720Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.039556Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.043115Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:36.103990Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.104849Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.108564Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T17:36:36.571002Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.571910Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.574933Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T17:36:36.836844Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.837804Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.841392Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T17:36:36.902515Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.903395Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.906850Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T17:36:36.938041Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T17:36:36.967854Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.967966Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.968754Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.969179Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:36.972262Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T17:36:37.003454Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T17:36:37.033714Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.033814Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.034593Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.034929Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.038396Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:37.039657Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T17:36:37.100170Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.101439Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.105864Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T17:36:37.217168Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.218017Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.221384Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T17:36:37.282590Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.283404Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.286536Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:37.347714Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.348575Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.352321Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T17:36:37.614519Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.615363Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.618413Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T17:36:37.679876Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.679997Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.680717Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.681072Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.685343Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T17:36:37.686356Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T17:36:37.746455Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.747235Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.751083Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T17:36:37.812109Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.812909Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:37.816383Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T17:36:38.027977Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.028722Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.032287Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T17:36:38.244125Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.244238Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.244948Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.245582Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.249061Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T17:36:38.250183Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:38.310332Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.310435Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.311127Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.311527Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.315927Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:38.316949Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:38.376708Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.376797Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.377460Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.378177Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.381249Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T17:36:38.382393Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:38.442459Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.442560Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.443202Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.443597Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.447133Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:38.448168Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:38.508280Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.508369Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.509052Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.509455Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.513239Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T17:36:38.514045Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T17:36:38.543942Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.544043Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.544657Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.545034Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.548774Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T17:36:38.551827Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:38.661152Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.661851Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.665109Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T17:36:38.726639Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.727382Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.731284Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T17:36:38.993061Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.993831Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.997870Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:39.026447Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.026535Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.027145Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.027518Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.030620Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:39.035389Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.035916Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.039139Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T17:36:39.062556Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:39.068175Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.068274Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.068836Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.069299Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.072739Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:39.073298Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T17:36:39.133851Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.133961Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.134544Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.135000Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.138708Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T17:36:39.501995Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.502582Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.505891Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T17:36:39.566970Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.567073Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.567646Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.568053Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.571892Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T17:36:39.612244Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T17:36:39.633046Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.633154Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.633736Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.634078Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.638410Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T17:36:39.639035Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:39.698707Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.698803Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.699329Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.702914Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:39.763956Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.828191Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.828699Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:39.832165Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T17:36:39.893114Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:40.158038Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:40.158613Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:40.161948Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:40.223063Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:40.337549Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:40.338069Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:40.341233Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T17:36:40.402518Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.412250Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:41.419149Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.419231Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.419684Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.420172Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.423509Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T17:36:41.424716Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:41.484803Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.484895Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.849847Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.850337Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.853709Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T17:36:41.914762Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.915045Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.915210Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.915635Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.916357Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.920875Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:41.922360Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:41.947176Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:41.951003Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.951061Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.951284Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.951814Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.955312Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:41.956400Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:41.959976Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.991634Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.991694Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.991900Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:41.994577Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:42.023854Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:44.946108Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:53.205361Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:53.205361Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] 
[2026-06-08T17:36:53.205361Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:53.205431Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] 
[2026-06-08T17:36:53.205445Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:53.205452Z] [nf-ac6843505b2154313876b96221bd7dbf-2a09e-cm6jg] [601_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec