Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/1f8d437761990ed890e1456d2296f8/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/00a1c2029e07b8b5c0b24aec2342f9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/00a1c2029e07b8b5c0b24aec2342f9/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-1kko20ws because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:38:30,630 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:38:31,477 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:38:31,646 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:38:32,560 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:38:32,722 - cnv_pipe.batch.run_model - INFO - Processing cluster 123 with 187 probes
2026-06-08 17:38:33,096 - cnv_pipe.batch.run_model.cluster123 - INFO - Child process started for cluster 123 with 187 probes
2026-06-08 17:39:30,945 - cnv_pipe.batch.run_model.cluster123 - INFO - Child process finished cluster 123. Wrote cluster_123_samples.csv and cluster_123_params.csv
2026-06-08 17:39:30,947 - cnv_pipe.batch.run_model - INFO - Cluster 123 finished in 58.22 seconds. Status: SUCCESS