Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/1f8d437761990ed890e1456d2296f8/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/cf3e28c4fee07a1443860c659a8708/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/cf3e28c4fee07a1443860c659a8708/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-3hfhq3wc because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:39:05,755 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:39:06,631 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:39:06,803 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:39:07,953 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:39:08,022 - cnv_pipe.batch.run_model - INFO - Processing cluster 331 with 84 probes
2026-06-08 17:39:08,403 - cnv_pipe.batch.run_model.cluster331 - INFO - Child process started for cluster 331 with 84 probes
2026-06-08 17:39:37,922 - cnv_pipe.batch.run_model.cluster331 - INFO - Child process finished cluster 331. Wrote cluster_331_samples.csv and cluster_331_params.csv
2026-06-08 17:39:37,923 - cnv_pipe.batch.run_model - INFO - Cluster 331 finished in 29.90 seconds. Status: SUCCESS