Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/a10ec5297fa0676ab1304a44430c2d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/eca79be93e6047250af2a424e89fae/germline_control_2.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/a10ec5297fa0676ab1304a44430c2d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/c941a753a8d429230748ece94e1f1c/germline_control_2.forcecall.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/eca79be93e6047250af2a424e89fae/germline_control_2.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/c941a753a8d429230748ece94e1f1c/germline_control_2.forcecall.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.8VtH88
Merging 1 temporary files
Done
Cleaning