File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/ea4e8d933ecd4598a1d142a214ae3b/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-_y5_pfoz because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:45:21,989 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:45:22,863 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:45:23,040 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:45:24,042 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:45:24,216 - cnv_pipe.batch.run_model - INFO - Processing cluster 2585 with 178 probes
2026-06-08 17:45:24,592 - cnv_pipe.batch.run_model.cluster2585 - INFO - Child process started for cluster 2585 with 178 probes
2026-06-08 17:46:18,044 - cnv_pipe.batch.run_model.cluster2585 - INFO - Child process finished cluster 2585. Wrote cluster_2585_samples.csv and cluster_2585_params.csv
2026-06-08 17:46:18,046 - cnv_pipe.batch.run_model - INFO - Cluster 2585 finished in 53.83 seconds. Status: SUCCESS