Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/a10ec5297fa0676ab1304a44430c2d/germline_control_2.haplotyper.merged.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/234cb10dbf250ebb0b6bcc515ef8e2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/234cb10dbf250ebb0b6bcc515ef8e2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/a10ec5297fa0676ab1304a44430c2d/germline_control_2.haplotyper.merged.vcf.gz.tbi
==> STAGING COMPLETE (5 inputs)

Lines   total/split/joined/realigned/mismatch_removed/dup_removed/skipped:	394/0/0/0/0/0/0
ls: cannot access '*.vcf': No such file or directory
ls: cannot access '*.bcf': No such file or directory
ls: cannot access '*.bcf.gz': No such file or directory
ls: cannot access '*.csi': No such file or directory