[2026-06-08T17:36:27.407260Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:27.409598Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:27.409609Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:27.409614Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:27.409618Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX8k6XjF'
[2026-06-08T17:36:27.409622Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:27.409628Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:27.409631Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:27.409635Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:27.409638Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:27.409642Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:27.409646Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:27.409649Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:27.409653Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:27.410330Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:27.410424Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:27.416129Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:27.416811Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:27.417068Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:27.417324Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:27.417548Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.418551Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.418941Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.419180Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.419340Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.419591Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.419894Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.421429Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.421807Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.422478Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:27.423247Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423406Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423606Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423680Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423802Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423869Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423982Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424048Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424158Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424371Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424956Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425139Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425498Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425711Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425823Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425910Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.426384Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.426459Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.426574Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.426641Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.426991Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427268Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427398Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427462Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427595Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427664Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427776Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427844Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427956Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.428026Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.428136Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.428198Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.428335Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.428527Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429195Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429275Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429393Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429530Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429661Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429735Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429850Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429919Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.430029Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.430100Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.430302Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.430428Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.430875Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431341Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431477Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431555Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431684Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431747Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431876Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431949Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.448160Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.448279Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.448353Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.448523Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.448600Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.448697Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.448771Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.448882Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.448950Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.449000Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:27.454837Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.455407Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.455884Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.456329Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.457046Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.458164Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.459457Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.460144Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.461166Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.464632Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T17:36:27.468731Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T17:36:27.469926Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T17:36:27.472995Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T17:36:27.475551Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T17:36:27.477972Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T17:36:27.481783Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T17:36:27.482945Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T17:36:27.580120Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.580189Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.580217Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.580239Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.580897Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.581372Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.581840Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.584493Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.585500Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T17:36:27.589853Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T17:36:27.591624Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T17:36:27.649470Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.650217Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.654118Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T17:36:27.765235Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.766044Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.769437Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T17:36:27.830700Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.831613Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.835211Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T17:36:27.864349Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.865139Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.868383Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T17:36:27.881442Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.882226Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.885342Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T17:36:28.598555Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.599296Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.602346Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T17:36:28.663888Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.664930Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.668548Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:28.779798Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.780781Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.783995Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:28.845270Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.846282Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.849476Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T17:36:29.011149Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.012261Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.016227Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T17:36:29.227760Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.228774Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.232486Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T17:36:29.374298Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T17:36:29.393517Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.393607Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.393647Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.394715Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.395389Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.395884Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.400853Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T17:36:29.401611Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T17:36:29.404248Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T17:36:29.461135Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.461227Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.462070Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.462694Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.466345Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T17:36:29.467354Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T17:36:29.471028Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.471847Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.474696Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T17:36:29.503799Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.504694Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.507764Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:29.512553Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.513377Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.517092Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T17:36:29.577761Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.577846Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.578779Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.579209Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.582543Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T17:36:29.583711Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T17:36:29.587424Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.588159Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.592174Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T17:36:29.596019Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.596752Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.599924Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T17:36:29.629205Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.629280Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.629307Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.630062Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.630572Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.633259Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.633991Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T17:36:29.637552Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T17:36:29.638133Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T17:36:29.650199Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.650988Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.654128Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T17:36:29.683066Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.683864Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.687647Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T17:36:29.748576Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.749381Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.753235Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T17:36:29.864750Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.865702Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.869258Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T17:36:29.930192Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.930301Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.931127Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.931555Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.935525Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T17:36:29.937075Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T17:36:29.996896Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.997002Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.997661Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.998079Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.002237Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T17:36:30.004079Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T17:36:30.031143Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.031966Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.035725Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T17:36:30.048358Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.049214Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.052639Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T17:36:30.065553Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.066232Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.069154Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T17:36:30.082154Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.082875Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.085959Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T17:36:30.114946Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.115618Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.118474Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T17:36:30.147842Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.148512Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.151931Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T17:36:30.180951Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.181693Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.185342Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T17:36:30.198086Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.198747Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.202058Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T17:36:30.263169Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.263833Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.267438Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T17:36:30.328553Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.329604Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.332664Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T17:36:30.337438Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.338018Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.341413Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T17:36:30.402109Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.402219Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.616737Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.617413Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.621818Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T17:36:30.681805Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.796323Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.796804Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.799805Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T17:36:30.860925Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.892954Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.893403Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.896414Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T17:36:30.957579Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.322404Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.322480Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.322898Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.323231Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.326208Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T17:36:31.327327Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T17:36:31.387916Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.387998Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.802691Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.803187Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.806817Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T17:36:31.867884Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.868179Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.868355Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.868732Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.868955Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.873750Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:31.875232Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:31.876162Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:31.902741Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.903206Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.903621Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.903893Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.906678Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:31.908121Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.909189Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:31.939967Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.940027Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.940205Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.943177Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:31.972119Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.088960Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:37.965605Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:37.965605Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] 
[2026-06-08T17:36:37.965605Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:37.965653Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] 
[2026-06-08T17:36:37.965660Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:37.965666Z] [nf-4a9951cac86f8ab324082a23863c562f-35848-r6blk] [607_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec