File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/ca34ae33503111418f31a7e3ed94ce/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-08T17:36:21.747328Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:21.755821Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:21.755856Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:21.755862Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:21.755867Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXQwlF3a'
[2026-06-08T17:36:21.755872Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:21.755878Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:21.755882Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:21.755886Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:21.755890Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:21.755893Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:21.755897Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:21.755900Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:21.755904Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:21.756461Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:21.756560Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:21.762605Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:21.763371Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:21.763583Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:21.763776Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:21.764070Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.764402Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.764494Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.764567Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.764688Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.764757Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.764878Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.764942Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.765060Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.765156Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.765549Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.765866Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.766036Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.766381Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.766703Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.767397Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.767590Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.769514Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.769871Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:21.770109Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.770382Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.770456Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.770576Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.770647Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.770768Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.770832Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.770952Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.771027Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.771527Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.771735Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.771856Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.771925Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.772034Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.772118Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.772240Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.772364Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.772529Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.772610Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.772726Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.772992Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.773387Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.773454Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.773566Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.773630Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.774079Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.774141Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.774254Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.774319Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.774633Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.775509Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.775888Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.775957Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.776081Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.776145Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.776257Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.776320Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.776434Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.776498Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.776607Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.776673Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.776826Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.776898Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.777415Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.777843Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.777960Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.778029Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.778188Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.778252Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.794918Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.795135Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.795213Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.795375Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.795446Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.795532Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.795603Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.797255Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.797951Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:21.798012Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:21.800541Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.801100Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.801361Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.803858Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.804718Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T17:36:21.805066Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.805989Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.808164Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T17:36:21.808796Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.811830Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:21.812152Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.813113Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.818167Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T17:36:21.823217Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:21.824062Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T17:36:21.827042Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:21.980186Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.980987Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.984046Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:22.547332Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.548207Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.551416Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T17:36:22.862703Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T17:36:22.863137Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.863903Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.867082Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:22.896376Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.897171Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.901221Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T17:36:22.930060Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.930880Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.934267Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T17:36:23.647720Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.648558Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.651410Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T17:36:23.680755Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.680855Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.681606Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.681933Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.685593Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:23.686656Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T17:36:23.746931Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.747718Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.750436Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T17:36:23.763709Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.764418Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.767329Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T17:36:23.828900Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.829723Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.832927Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T17:36:24.094647Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.095383Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.098335Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:24.209754Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.210587Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.213639Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T17:36:24.576215Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.577014Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.580783Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:24.641989Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.642985Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.646546Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T17:36:24.858266Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.859141Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.862921Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:24.924067Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.924926Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.928627Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T17:36:24.989438Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.990259Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.993886Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T17:36:25.006603Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.007381Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.010980Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T17:36:25.041088Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.041868Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.044400Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.045007Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:25.045408Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.048433Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T17:36:25.077570Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.078300Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.081100Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.081879Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.082406Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T17:36:25.085433Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:25.146578Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.146671Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.147341Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.147696Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.150854Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T17:36:25.152052Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:25.212112Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.212226Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.212958Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.213507Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.218386Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T17:36:25.219890Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:25.279462Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.280233Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.285067Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T17:36:25.396111Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.396833Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.399913Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T17:36:25.461100Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.461824Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.464999Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:25.526342Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.527025Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.530949Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T17:36:25.559494Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.560155Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.563217Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T17:36:25.567912Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.568430Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.572327Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:25.601326Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.601972Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.605058Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:25.605887Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.606435Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.609205Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:25.638510Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.639177Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.642333Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T17:36:25.647253Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.647309Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.647787Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.648144Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.651666Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T17:36:25.652758Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T17:36:26.214154Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.214740Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.218383Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T17:36:26.278905Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.279527Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.282704Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:26.311844Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.312414Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.316632Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T17:36:26.377618Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.378206Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.381329Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:26.442628Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.443141Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.447242Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:26.508173Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.508806Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.512013Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T17:36:26.524928Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.525487Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.529257Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T17:36:26.558064Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.558621Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.561733Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T17:36:26.563041Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.563580Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.567792Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:26.596481Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.597038Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.600267Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T17:36:27.062991Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.063575Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.066647Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T17:36:27.127977Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.128560Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.131698Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:27.493876Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.494450Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.497842Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:27.528072Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.528625Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.531446Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T17:36:27.560751Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.560831Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.561303Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.564071Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:27.625465Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.739813Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.739897Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.740352Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.740733Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.744653Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T17:36:27.745895Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:27.773327Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.774025Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.774359Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.777546Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T17:36:27.778262Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.810037Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.375055Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.375489Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.378411Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:28.439655Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.439724Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.440121Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.442996Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T17:36:28.504160Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.668504Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.668892Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.672042Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:28.702348Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.702692Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.702856Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.703282Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.704053Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.708229Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.709801Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.710728Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:28.738415Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.738599Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.738720Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.738924Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.739314Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.742928Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.744173Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.772258Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.779700Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.779917Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.783428Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:28.811979Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.334422Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:40.644377Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:40.644377Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] 
[2026-06-08T17:36:40.644377Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:40.644437Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] 
[2026-06-08T17:36:40.644444Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:40.644451Z] [nf-92ca34ae33503111418f31a7e3ed94ce-cf771-z5fvr] [599_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec